Cow genome map
| Conread name: | Ss1.1-Mixn-0021i19.5 |
| Conread position: | 500-1283 |
| Cow position: | chr14:3061820-3061038 (view UCSC Genome Browser custom track) |
| Alignm length: | 789 |
| Alignm identity: | 490 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 34, 12 |
| Conread position: | 502-704 |
| Cow position: | chr14:3060896-3060694 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 134 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 502-1242 |
| Cow position: | chr14:680564-681305 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 735, 715 |
| Conread position: | 502-1247 |
| Cow position: | chr14:3155750-3156480 (view UCSC Genome Browser custom track) |
| Alignm length: | 750 |
| Alignm identity: | 449 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 58, 54 |
| Conread position: | 503-1212 |
| Cow position: | chr14:3061651-3060942 (view UCSC Genome Browser custom track) |
| Alignm length: | 713 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 215, 219 |
| Conread position: | 503-1240 |
| Cow position: | chr14:680397-681134 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 459 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 463, 472 |
| Conread position: | 503-1247 |
| Cow position: | chr14:680481-681225 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 455 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 394 |
| Conread position: | 503-1247 |
| Cow position: | chr14:3061735-3060991 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 464 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 227 |
| Conread position: | 503-1247 |
| Cow position: | chr14:3080504-3079760 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 482 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 33, 26 |
| Conread position: | 504-987 |
| Cow position: | chr14:433901-434384 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 331 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 25 |
| Conread position: | 504-998 |
| Cow position: | chr14:3080167-3079673 (view UCSC Genome Browser custom track) |
| Alignm length: | 495 |
| Alignm identity: | 305 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-1069 |
| Cow position: | chr14:3061230-3060665 (view UCSC Genome Browser custom track) |
| Alignm length: | 566 |
| Alignm identity: | 361 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-1079 |
| Cow position: | chr14:3127847-3127272 (view UCSC Genome Browser custom track) |
| Alignm length: | 577 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 220, 227 |
| Conread position: | 504-1153 |
| Cow position: | chr14:3127931-3127282 (view UCSC Genome Browser custom track) |
| Alignm length: | 652 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 31, 27 |
| Conread position: | 504-1164 |
| Cow position: | chr14:447596-448256 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 143 |
| Conread position: | 504-1208 |
| Cow position: | chr14:3061566-3060862 (view UCSC Genome Browser custom track) |
| Alignm length: | 705 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-1222 |
| Cow position: | chr14:25895457-25896175 (view UCSC Genome Browser custom track) |
| Alignm length: | 725 |
| Alignm identity: | 419 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 104, 100 |
| Conread position: | 504-1239 |
| Cow position: | chr14:3080419-3079684 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 686, 692 |
| Conread position: | 504-1240 |
| Cow position: | chr14:3080587-3079851 (view UCSC Genome Browser custom track) |
| Alignm length: | 737 |
| Alignm identity: | 463 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 504-1247 |
| Cow position: | chr14:3080755-3080012 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 467 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 219, 214 |
| Conread position: | 504-1247 |
| Cow position: | chr14:25895373-25896116 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 434 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 377, 386 |
| Conread position: | 504-1247 |
| Cow position: | chr14:25895625-25896368 (view UCSC Genome Browser custom track) |
| Alignm length: | 748 |
| Alignm identity: | 429 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 125, 153 |
| Conread position: | 505-1240 |
| Cow position: | chr14:3081006-3080271 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 34 |
| Conread position: | 505-1247 |
| Cow position: | chr14:3128014-3127272 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 437 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 204 |
| Conread position: | 506-1247 |
| Cow position: | chr14:3080921-3080180 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 447 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 512-718 |
| Cow position: | chr14:663304-663098 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 138 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 139, 144 |
| Conread position: | 514-828 |
| Cow position: | chr14:3156167-3156481 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-832 |
| Cow position: | chr14:3155510-3155828 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 514-1247 |
| Cow position: | chr14:3080661-3079928 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 457 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 515-1153 |
| Cow position: | chr14:433746-434382 (view UCSC Genome Browser custom track) |
| Alignm length: | 643 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 518-1247 |
| Cow position: | chr14:3080825-3080096 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 462 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 60 |
| Conread position: | 519-828 |
| Cow position: | chr14:3127580-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 519-987 |
| Cow position: | chr14:3061131-3060663 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 138 |
| Conread position: | 519-1082 |
| Cow position: | chr14:3155920-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 342 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 120, 115 |
| Conread position: | 520-996 |
| Cow position: | chr14:3127747-3127271 (view UCSC Genome Browser custom track) |
| Alignm length: | 477 |
| Alignm identity: | 284 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-1163 |
| Cow position: | chr14:3061298-3060655 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 520-1247 |
| Cow position: | chr14:3128083-3127356 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 125 |
| Conread position: | 520-1247 |
| Cow position: | chr14:3155600-3156312 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 208 |
| Conread position: | 522-1239 |
| Cow position: | chr14:25894971-25895688 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 422 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 293, 284 |
| Conread position: | 522-1242 |
| Cow position: | chr14:3128165-3127445 (view UCSC Genome Browser custom track) |
| Alignm length: | 721 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 523-1089 |
| Cow position: | chr14:3080232-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 354 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 134 |
| Conread position: | 523-1247 |
| Cow position: | chr14:3061381-3060655 (view UCSC Genome Browser custom track) |
| Alignm length: | 729 |
| Alignm identity: | 460 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 5, 136 |
| Conread position: | 532-756 |
| Cow position: | chr14:434181-434405 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 119, 124 |
| Conread position: | 533-873 |
| Cow position: | chr14:663451-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 342 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 30, 24 |
| Conread position: | 533-1239 |
| Cow position: | chr14:3061453-3060747 (view UCSC Genome Browser custom track) |
| Alignm length: | 712 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 14 |
| Conread position: | 534-1247 |
| Cow position: | chr14:680176-680889 (view UCSC Genome Browser custom track) |
| Alignm length: | 718 |
| Alignm identity: | 444 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 535-1243 |
| Cow position: | chr14:25895320-25896028 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 171, 180 |
| Conread position: | 543-1085 |
| Cow position: | chr14:433856-434399 (view UCSC Genome Browser custom track) |
| Alignm length: | 546 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 186, 174 |
| Conread position: | 560-1249 |
| Cow position: | chr14:447568-448257 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 242, 249 |
| Conread position: | 562-1218 |
| Cow position: | chr14:25895179-25895835 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 85, 73 |
| Conread position: | 570-1247 |
| Cow position: | chr14:25894935-25895612 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 393 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 573-1173 |
| Cow position: | chr14:25895778-25896378 (view UCSC Genome Browser custom track) |
| Alignm length: | 605 |
| Alignm identity: | 348 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 59, 79 |
| Conread position: | 573-1212 |
| Cow position: | chr14:25895106-25895745 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 60, 70 |
| Conread position: | 573-1247 |
| Cow position: | chr14:25836375-25837049 (view UCSC Genome Browser custom track) |
| Alignm length: | 679 |
| Alignm identity: | 379 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 63, 86 |
| Conread position: | 573-1247 |
| Cow position: | chr14:25895274-25895948 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 401 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-1247 |
| Cow position: | chr14:680384-681057 (view UCSC Genome Browser custom track) |
| Alignm length: | 677 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 83 |
| Conread position: | 579-1005 |
| Cow position: | chr14:3155407-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 268 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 580-957 |
| Cow position: | chr14:663487-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 67, 13 |
| Conread position: | 641-1247 |
| Cow position: | chr14:433789-434392 (view UCSC Genome Browser custom track) |
| Alignm length: | 613 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 15 |
| Conread position: | 670-1236 |
| Cow position: | chr14:447510-448076 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 351 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 53 |
| Conread position: | 673-1079 |
| Cow position: | chr14:3155417-3155823 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 261 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 208, 217 |
| Conread position: | 674-1054 |
| Cow position: | chr14:663478-663098 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 707-1212 |
| Cow position: | chr14:433768-434273 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 334 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 187, 179 |
| Conread position: | 748-1163 |
| Cow position: | chr14:3155408-3155823 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 262 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 396, 400 |
| Conread position: | 751-1249 |
| Cow position: | chr14:3155900-3156398 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 297 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 399, 393 |
| Conread position: | 774-1123 |
| Cow position: | chr14:663462-663112 (view UCSC Genome Browser custom track) |
| Alignm length: | 351 |
| Alignm identity: | 215 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 347, 0 |
| Conread position: | 806-1247 |
| Cow position: | chr14:447562-448003 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 282 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 161, 168 |
| Conread position: | 837-1209 |
| Cow position: | chr14:663482-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 230 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 53, 7 |
| Conread position: | 837-1247 |
| Cow position: | chr14:447509-447919 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 259 |
| Alignm E-value: | 9e-32 |
| Alignm gaps (pig, cow): | 146, 139 |
| Conread position: | 858-1247 |
| Cow position: | chr14:3155434-3155823 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 35, 40 |
| Conread position: | 892-1248 |
| Cow position: | chr14:3080871-3080515 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 283, 291 |
| Conread position: | 917-1312 |
| Cow position: | chr14:112-507 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 255, 81 |
| Conread position: | 941-1242 |
| Cow position: | chr14:3155433-3155734 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 275, 282 |
Show alignments to all cow chromosomes.