Cow genome map


           Conread name:
           Ss1.1-Mixn-0021i19.5
        

               Conread position:
               439-1247
               

               Cow position:
               
               

               Alignm length:
               815
               

               Alignm identity:
               542
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               92, 60
               

               Conread position:
               495-828
               

               Cow position:
               
               

               Alignm length:
               340
               

               Alignm identity:
               219
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               12, 56
               

               Conread position:
               502-748
               

               Cow position:
               
               

               Alignm length:
               247
               

               Alignm identity:
               162
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               502-750
               

               Cow position:
               
               

               Alignm length:
               251
               

               Alignm identity:
               162
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               136, 120
               

               Conread position:
               502-842
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               223
               

               Alignm E-value:
               6e-27
               

               Alignm gaps (pig, cow):
               131, 126
               

               Conread position:
               502-846
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               32, 24
               

               Conread position:
               502-878
               

               Cow position:
               
               

               Alignm length:
               383
               

               Alignm identity:
               240
               

               Alignm E-value:
               5e-26
               

               Alignm gaps (pig, cow):
               31, 18
               

               Conread position:
               502-1094
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 34
               

               Conread position:
               502-1174
               

               Cow position:
               
               

               Alignm length:
               691
               

               Alignm identity:
               427
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               38, 46
               

               Conread position:
               503-1084
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               353
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               52, 36
               

               Conread position:
               503-1248
               

               Cow position:
               
               

               Alignm length:
               748
               

               Alignm identity:
               429
               

               Alignm E-value:
               7e-39
               

               Alignm gaps (pig, cow):
               404, 398
               

               Conread position:
               504-926
               

               Cow position:
               
               

               Alignm length:
               425
               

               Alignm identity:
               270
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               41, 27
               

               Conread position:
               504-982
               

               Cow position:
               
               

               Alignm length:
               481
               

               Alignm identity:
               284
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               311, 298
               

               Conread position:
               504-986
               

               Cow position:
               
               

               Alignm length:
               484
               

               Alignm identity:
               283
               

               Alignm E-value:
               2e-27
               

               Alignm gaps (pig, cow):
               311, 307
               

               Conread position:
               504-998
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               310
               

               Alignm E-value:
               4.2039e-45
               

               Alignm gaps (pig, cow):
               63, 69
               

               Conread position:
               504-998
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               303
               

               Alignm E-value:
               2e-38
               

               Alignm gaps (pig, cow):
               147, 152
               

               Conread position:
               504-1038
               

               Cow position:
               
               

               Alignm length:
               537
               

               Alignm identity:
               329
               

               Alignm E-value:
               4.06377e-44
               

               Alignm gaps (pig, cow):
               129, 138
               

               Conread position:
               504-1081
               

               Cow position:
               
               

               Alignm length:
               581
               

               Alignm identity:
               333
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               125, 134
               

               Conread position:
               504-1096
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               347
               

               Alignm E-value:
               1e-32
               

               Alignm gaps (pig, cow):
               130, 142
               

               Conread position:
               504-1153
               

               Cow position:
               
               

               Alignm length:
               650
               

               Alignm identity:
               394
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               504-1239
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               504-1247
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               290, 277
               

               Conread position:
               504-1247
               

               Cow position:
               
               

               Alignm length:
               744
               

               Alignm identity:
               451
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               504-1247
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               473
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               147, 152
               

               Conread position:
               504-1265
               

               Cow position:
               
               

               Alignm length:
               764
               

               Alignm identity:
               442
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               211, 197
               

               Conread position:
               504-1281
               

               Cow position:
               
               

               Alignm length:
               789
               

               Alignm identity:
               477
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 132
               

               Conread position:
               505-1085
               

               Cow position:
               
               

               Alignm length:
               585
               

               Alignm identity:
               364
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               146, 151
               

               Conread position:
               505-1247
               

               Cow position:
               
               

               Alignm length:
               745
               

               Alignm identity:
               440
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 137
               

               Conread position:
               513-1240
               

               Cow position:
               
               

               Alignm length:
               729
               

               Alignm identity:
               438
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 40
               

               Conread position:
               514-1056
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               317
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               33, 47
               

               Conread position:
               514-1105
               

               Cow position:
               
               

               Alignm length:
               597
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 131
               

               Conread position:
               514-1125
               

               Cow position:
               
               

               Alignm length:
               614
               

               Alignm identity:
               364
               

               Alignm E-value:
               8.99998e-41
               

               Alignm gaps (pig, cow):
               137, 142
               

               Conread position:
               514-1169
               

               Cow position:
               
               

               Alignm length:
               658
               

               Alignm identity:
               385
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               287, 301
               

               Conread position:
               514-1208
               

               Cow position:
               
               

               Alignm length:
               700
               

               Alignm identity:
               412
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               116, 126
               

               Conread position:
               514-1241
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               449
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 142
               

               Conread position:
               514-1241
               

               Cow position:
               
               

               Alignm length:
               730
               

               Alignm identity:
               457
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               215, 207
               

               Conread position:
               514-1247
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               426
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               205, 217
               

               Conread position:
               514-1247
               

               Cow position:
               
               

               Alignm length:
               739
               

               Alignm identity:
               419
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               366, 376
               

               Conread position:
               514-1247
               

               Cow position:
               
               

               Alignm length:
               736
               

               Alignm identity:
               462
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 119
               

               Conread position:
               514-1248
               

               Cow position:
               
               

               Alignm length:
               742
               

               Alignm identity:
               447
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               137, 142
               

               Conread position:
               518-1247
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               453
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 138
               

               Conread position:
               520-828
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               198
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               131, 136
               

               Conread position:
               520-1173
               

               Cow position:
               
               

               Alignm length:
               659
               

               Alignm identity:
               389
               

               Alignm E-value:
               8e-40
               

               Alignm gaps (pig, cow):
               278, 262
               

               Conread position:
               520-1178
               

               Cow position:
               
               

               Alignm length:
               663
               

               Alignm identity:
               400
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 11
               

               Conread position:
               520-1206
               

               Cow position:
               
               

               Alignm length:
               687
               

               Alignm identity:
               407
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               520-1240
               

               Cow position:
               
               

               Alignm length:
               725
               

               Alignm identity:
               442
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               381, 355
               

               Conread position:
               520-1247
               

               Cow position:
               
               

               Alignm length:
               730
               

               Alignm identity:
               426
               

               Alignm E-value:
               9.80909e-45
               

               Alignm gaps (pig, cow):
               290, 282
               

               Conread position:
               520-1247
               

               Cow position:
               
               

               Alignm length:
               732
               

               Alignm identity:
               454
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               205, 210
               

               Conread position:
               520-1247
               

               Cow position:
               
               

               Alignm length:
               731
               

               Alignm identity:
               445
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               96, 104
               

               Conread position:
               520-1248
               

               Cow position:
               
               

               Alignm length:
               733
               

               Alignm identity:
               436
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 126
               

               Conread position:
               520-1248
               

               Cow position:
               
               

               Alignm length:
               734
               

               Alignm identity:
               435
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               109, 118
               

               Conread position:
               530-1253
               

               Cow position:
               
               

               Alignm length:
               728
               

               Alignm identity:
               425
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               37, 46
               

               Conread position:
               531-1239
               

               Cow position:
               
               

               Alignm length:
               711
               

               Alignm identity:
               415
               

               Alignm E-value:
               3.9937e-43
               

               Alignm gaps (pig, cow):
               355, 359
               

               Conread position:
               539-1093
               

               Cow position:
               
               

               Alignm length:
               565
               

               Alignm identity:
               328
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               93, 14
               

               Conread position:
               547-1247
               

               Cow position:
               
               

               Alignm length:
               715
               

               Alignm identity:
               430
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               77, 98
               

               Conread position:
               560-1247
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               443
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               91, 97
               

               Conread position:
               561-817
               

               Cow position:
               
               

               Alignm length:
               258
               

               Alignm identity:
               164
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               149, 170
               

               Conread position:
               561-1041
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               306
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               110, 103
               

               Conread position:
               562-779
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               151
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               174, 191
               

               Conread position:
               562-1199
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               416
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               173, 181
               

               Conread position:
               562-1227
               

               Cow position:
               
               

               Alignm length:
               669
               

               Alignm identity:
               387
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               253, 249
               

               Conread position:
               573-901
               

               Cow position:
               
               

               Alignm length:
               329
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               573-1212
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               370
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               162, 167
               

               Conread position:
               573-1247
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               395
               

               Alignm E-value:
               1.00053e-42
               

               Alignm gaps (pig, cow):
               307, 326
               

               Conread position:
               574-1212
               

               Cow position:
               
               

               Alignm length:
               643
               

               Alignm identity:
               370
               

               Alignm E-value:
               7e-29
               

               Alignm gaps (pig, cow):
               39, 46
               

               Conread position:
               574-1226
               

               Cow position:
               
               

               Alignm length:
               658
               

               Alignm identity:
               380
               

               Alignm E-value:
               3e-30
               

               Alignm gaps (pig, cow):
               161, 166
               

               Conread position:
               574-1247
               

               Cow position:
               
               

               Alignm length:
               676
               

               Alignm identity:
               392
               

               Alignm E-value:
               6e-37
               

               Alignm gaps (pig, cow):
               308, 45
               

               Conread position:
               579-1247
               

               Cow position:
               
               

               Alignm length:
               671
               

               Alignm identity:
               382
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               223, 227
               

               Conread position:
               582-1261
               

               Cow position:
               
               

               Alignm length:
               685
               

               Alignm identity:
               425
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               119, 140
               

               Conread position:
               583-1247
               

               Cow position:
               
               

               Alignm length:
               665
               

               Alignm identity:
               396
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               585-1168
               

               Cow position:
               
               

               Alignm length:
               592
               

               Alignm identity:
               369
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               39, 48
               

               Conread position:
               587-1151
               

               Cow position:
               
               

               Alignm length:
               576
               

               Alignm identity:
               361
               

               Alignm E-value:
               9.94922e-44
               

               Alignm gaps (pig, cow):
               51, 45
               

               Conread position:
               593-956
               

               Cow position:
               
               

               Alignm length:
               370
               

               Alignm identity:
               233
               

               Alignm E-value:
               3e-31
               

               Alignm gaps (pig, cow):
               293, 0
               

               Conread position:
               598-871
               

               Cow position:
               
               

               Alignm length:
               275
               

               Alignm identity:
               174
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               35, 28
               

               Conread position:
               598-997
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               251
               

               Alignm E-value:
               2e-36
               

               Alignm gaps (pig, cow):
               34, 40
               

               Conread position:
               604-1229
               

               Cow position:
               
               

               Alignm length:
               627
               

               Alignm identity:
               349
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               30, 38
               

               Conread position:
               645-1123
               

               Cow position:
               
               

               Alignm length:
               490
               

               Alignm identity:
               317
               

               Alignm E-value:
               3.00004e-41
               

               Alignm gaps (pig, cow):
               26, 17
               

               Conread position:
               646-1241
               

               Cow position:
               
               

               Alignm length:
               596
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               646-1247
               

               Cow position:
               
               

               Alignm length:
               606
               

               Alignm identity:
               388
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 10
               

               Conread position:
               647-1040
               

               Cow position:
               
               

               Alignm length:
               402
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-22
               

               Alignm gaps (pig, cow):
               26, 0
               

               Conread position:
               659-1247
               

               Cow position:
               
               

               Alignm length:
               589
               

               Alignm identity:
               334
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               672-1247
               

               Cow position:
               
               

               Alignm length:
               577
               

               Alignm identity:
               340
               

               Alignm E-value:
               2e-37
               

               Alignm gaps (pig, cow):
               504, 515
               

               Conread position:
               675-1236
               

               Cow position:
               
               

               Alignm length:
               566
               

               Alignm identity:
               350
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 298
               

               Conread position:
               682-1255
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               344
               

               Alignm E-value:
               3.00018e-42
               

               Alignm gaps (pig, cow):
               44, 39
               

               Conread position:
               690-1011
               

               Cow position:
               
               

               Alignm length:
               324
               

               Alignm identity:
               211
               

               Alignm E-value:
               1e-31
               

               Alignm gaps (pig, cow):
               187, 198
               

               Conread position:
               736-1236
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               292
               

               Alignm E-value:
               5e-25
               

               Alignm gaps (pig, cow):
               7, 158
               

               Conread position:
               741-1059
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               206
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               741-1227
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               287
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               410, 403
               

               Conread position:
               761-1182
               

               Cow position:
               
               

               Alignm length:
               429
               

               Alignm identity:
               272
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               37, 41
               

               Conread position:
               762-1107
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               221
               

               Alignm E-value:
               1e-33
               

               Alignm gaps (pig, cow):
               318, 0
               

               Conread position:
               765-1209
               

               Cow position:
               
               

               Alignm length:
               450
               

               Alignm identity:
               284
               

               Alignm E-value:
               6e-38
               

               Alignm gaps (pig, cow):
               141, 117
               

               Conread position:
               766-1093
               

               Cow position:
               
               

               Alignm length:
               338
               

               Alignm identity:
               220
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               34, 26
               

               Conread position:
               782-1069
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               19, 177
               

               Conread position:
               803-1080
               

               Cow position:
               
               

               Alignm length:
               282
               

               Alignm identity:
               182
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               9, 35
               

               Conread position:
               803-1247
               

               Cow position:
               
               

               Alignm length:
               451
               

               Alignm identity:
               282
               

               Alignm E-value:
               9e-31
               

               Alignm gaps (pig, cow):
               117, 11
               

               Conread position:
               814-1209
               

               Cow position:
               
               

               Alignm length:
               401
               

               Alignm identity:
               246
               

               Alignm E-value:
               7e-28
               

               Alignm gaps (pig, cow):
               327, 322
               

               Conread position:
               848-1119
               

               Cow position:
               
               

               Alignm length:
               274
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               204, 194
               

               Conread position:
               855-1163
               

               Cow position:
               
               

               Alignm length:
               310
               

               Alignm identity:
               203
               

               Alignm E-value:
               4e-34
               

               Alignm gaps (pig, cow):
               30, 35
               

               Conread position:
               859-1153
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               910-1240
               

               Cow position:
               
               

               Alignm length:
               332
               

               Alignm identity:
               209
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               286, 280
               

               Conread position:
               924-1196
               

               Cow position:
               
               

               Alignm length:
               277
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-20
               

               Alignm gaps (pig, cow):
               62, 85
               

               Conread position:
               943-1236
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               981-1242
               

               Cow position:
               
               

               Alignm length:
               264
               

               Alignm identity:
               170
               

               Alignm E-value:
               4e-23
               

               Alignm gaps (pig, cow):
               177, 195
               

               Conread position:
               1026-1235
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               138
               

               Alignm E-value:
               1e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               1026-1249
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-26
               

               Alignm gaps (pig, cow):
               0, 0
               
Show alignments to all cow chromosomes.