Cow genome map


           Conread name:
           Ss1.1-Mixn-0021i19.5
        

               Conread position:
               450-886
               

               Cow position:
               
               

               Alignm length:
               440
               

               Alignm identity:
               271
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               52, 14
               

               Conread position:
               460-827
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               45, 8
               

               Conread position:
               488-1209
               

               Cow position:
               
               

               Alignm length:
               726
               

               Alignm identity:
               471
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               228, 220
               

               Conread position:
               491-1084
               

               Cow position:
               
               

               Alignm length:
               604
               

               Alignm identity:
               375
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               23, 46
               

               Conread position:
               498-871
               

               Cow position:
               
               

               Alignm length:
               380
               

               Alignm identity:
               245
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               35, 22
               

               Conread position:
               498-1101
               

               Cow position:
               
               

               Alignm length:
               605
               

               Alignm identity:
               359
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               153, 159
               

               Conread position:
               502-844
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               236
               

               Alignm E-value:
               6e-40
               

               Alignm gaps (pig, cow):
               33, 29
               

               Conread position:
               502-925
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               400, 0
               

               Conread position:
               502-945
               

               Cow position:
               
               

               Alignm length:
               447
               

               Alignm identity:
               288
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               29, 34
               

               Conread position:
               502-996
               

               Cow position:
               
               

               Alignm length:
               497
               

               Alignm identity:
               308
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               122, 130
               

               Conread position:
               502-1066
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               238
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               29, 34
               

               Conread position:
               502-1071
               

               Cow position:
               
               

               Alignm length:
               571
               

               Alignm identity:
               377
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 33
               

               Conread position:
               502-1283
               

               Cow position:
               
               

               Alignm length:
               788
               

               Alignm identity:
               528
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 43
               

               Conread position:
               504-755
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               27, 32
               

               Conread position:
               504-793
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               504-873
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               252
               

               Alignm E-value:
               2.99878e-43
               

               Alignm gaps (pig, cow):
               60, 53
               

               Conread position:
               504-1016
               

               Cow position:
               
               

               Alignm length:
               516
               

               Alignm identity:
               331
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 32
               

               Conread position:
               504-1069
               

               Cow position:
               
               

               Alignm length:
               570
               

               Alignm identity:
               355
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               112, 134
               

               Conread position:
               504-1079
               

               Cow position:
               
               

               Alignm length:
               580
               

               Alignm identity:
               379
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 32
               

               Conread position:
               504-1156
               

               Cow position:
               
               

               Alignm length:
               656
               

               Alignm identity:
               435
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               504-1199
               

               Cow position:
               
               

               Alignm length:
               698
               

               Alignm identity:
               406
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               128, 141
               

               Conread position:
               504-1209
               

               Cow position:
               
               

               Alignm length:
               707
               

               Alignm identity:
               458
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 32
               

               Conread position:
               504-1209
               

               Cow position:
               
               

               Alignm length:
               708
               

               Alignm identity:
               466
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               504-1227
               

               Cow position:
               
               

               Alignm length:
               727
               

               Alignm identity:
               426
               

               Alignm E-value:
               8e-33
               

               Alignm gaps (pig, cow):
               405, 95
               

               Conread position:
               504-1235
               

               Cow position:
               
               

               Alignm length:
               733
               

               Alignm identity:
               500
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               342, 326
               

               Conread position:
               504-1236
               

               Cow position:
               
               

               Alignm length:
               734
               

               Alignm identity:
               489
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               561, 556
               

               Conread position:
               504-1239
               

               Cow position:
               
               

               Alignm length:
               738
               

               Alignm identity:
               479
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               31, 25
               

               Conread position:
               513-1270
               

               Cow position:
               
               

               Alignm length:
               761
               

               Alignm identity:
               499
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               23, 16
               

               Conread position:
               514-945
               

               Cow position:
               
               

               Alignm length:
               436
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               115, 132
               

               Conread position:
               514-1052
               

               Cow position:
               
               

               Alignm length:
               542
               

               Alignm identity:
               311
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               209, 195
               

               Conread position:
               518-1058
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               317
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               150, 144
               

               Conread position:
               519-1172
               

               Cow position:
               
               

               Alignm length:
               657
               

               Alignm identity:
               382
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               115, 126
               

               Conread position:
               520-733
               

               Cow position:
               
               

               Alignm length:
               215
               

               Alignm identity:
               144
               

               Alignm E-value:
               3e-23
               

               Alignm gaps (pig, cow):
               86, 9
               

               Conread position:
               520-1094
               

               Cow position:
               
               

               Alignm length:
               575
               

               Alignm identity:
               341
               

               Alignm E-value:
               1.99993e-41
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               527-879
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               223
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               8, 203
               

               Conread position:
               532-1124
               

               Cow position:
               
               

               Alignm length:
               595
               

               Alignm identity:
               403
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               533, 528
               

               Conread position:
               534-1015
               

               Cow position:
               
               

               Alignm length:
               486
               

               Alignm identity:
               285
               

               Alignm E-value:
               3e-22
               

               Alignm gaps (pig, cow):
               29, 19
               

               Conread position:
               535-957
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               274
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               52, 43
               

               Conread position:
               552-1153
               

               Cow position:
               
               

               Alignm length:
               609
               

               Alignm identity:
               370
               

               Alignm E-value:
               2e-40
               

               Alignm gaps (pig, cow):
               28, 107
               

               Conread position:
               558-818
               

               Cow position:
               
               

               Alignm length:
               261
               

               Alignm identity:
               172
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               559-1180
               

               Cow position:
               
               

               Alignm length:
               624
               

               Alignm identity:
               367
               

               Alignm E-value:
               5e-39
               

               Alignm gaps (pig, cow):
               76, 86
               

               Conread position:
               561-1242
               

               Cow position:
               
               

               Alignm length:
               683
               

               Alignm identity:
               460
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               157, 161
               

               Conread position:
               562-1103
               

               Cow position:
               
               

               Alignm length:
               545
               

               Alignm identity:
               324
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               169, 162
               

               Conread position:
               570-902
               

               Cow position:
               
               

               Alignm length:
               335
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-34
               

               Alignm gaps (pig, cow):
               8, 153
               

               Conread position:
               580-1097
               

               Cow position:
               
               

               Alignm length:
               520
               

               Alignm identity:
               300
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               295, 192
               

               Conread position:
               580-1260
               

               Cow position:
               
               

               Alignm length:
               684
               

               Alignm identity:
               437
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               138, 142
               

               Conread position:
               582-996
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               250
               

               Alignm E-value:
               7e-31
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               585-1024
               

               Cow position:
               
               

               Alignm length:
               445
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 51
               

               Conread position:
               588-1155
               

               Cow position:
               
               

               Alignm length:
               573
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 59
               

               Conread position:
               588-1283
               

               Cow position:
               
               

               Alignm length:
               702
               

               Alignm identity:
               441
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 129
               

               Conread position:
               597-1001
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               265
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               104, 114
               

               Conread position:
               604-1248
               

               Cow position:
               
               

               Alignm length:
               646
               

               Alignm identity:
               363
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               622, 617
               

               Conread position:
               607-1067
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               310
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 52
               

               Conread position:
               646-1235
               

               Cow position:
               
               

               Alignm length:
               593
               

               Alignm identity:
               392
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               230, 21
               

               Conread position:
               655-1096
               

               Cow position:
               
               

               Alignm length:
               442
               

               Alignm identity:
               258
               

               Alignm E-value:
               1e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               662-1046
               

               Cow position:
               
               

               Alignm length:
               387
               

               Alignm identity:
               256
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               21, 5
               

               Conread position:
               664-1125
               

               Cow position:
               
               

               Alignm length:
               463
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               88, 17
               

               Conread position:
               669-1209
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               337
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 53
               

               Conread position:
               670-1039
               

               Cow position:
               
               

               Alignm length:
               373
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-28
               

               Alignm gaps (pig, cow):
               51, 43
               

               Conread position:
               672-1117
               

               Cow position:
               
               

               Alignm length:
               452
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 50
               

               Conread position:
               672-1247
               

               Cow position:
               
               

               Alignm length:
               578
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               166, 158
               

               Conread position:
               673-1173
               

               Cow position:
               
               

               Alignm length:
               504
               

               Alignm identity:
               306
               

               Alignm E-value:
               8e-32
               

               Alignm gaps (pig, cow):
               294, 191
               

               Conread position:
               690-1079
               

               Cow position:
               
               

               Alignm length:
               391
               

               Alignm identity:
               245
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               375, 370
               

               Conread position:
               706-1163
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               46, 40
               

               Conread position:
               738-1070
               

               Cow position:
               
               

               Alignm length:
               334
               

               Alignm identity:
               204
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               8, 0
               

               Conread position:
               741-1151
               

               Cow position:
               
               

               Alignm length:
               411
               

               Alignm identity:
               238
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               746-1255
               

               Cow position:
               
               

               Alignm length:
               511
               

               Alignm identity:
               340
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               319, 314
               

               Conread position:
               751-1209
               

               Cow position:
               
               

               Alignm length:
               460
               

               Alignm identity:
               276
               

               Alignm E-value:
               3e-32
               

               Alignm gaps (pig, cow):
               303, 314
               

               Conread position:
               753-1174
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               142, 136
               

               Conread position:
               753-1247
               

               Cow position:
               
               

               Alignm length:
               495
               

               Alignm identity:
               298
               

               Alignm E-value:
               1e-36
               

               Alignm gaps (pig, cow):
               352, 0
               

               Conread position:
               756-1130
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 5
               

               Conread position:
               765-1108
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               224
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               19, 94
               

               Conread position:
               772-1213
               

               Cow position:
               
               

               Alignm length:
               444
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               295, 289
               

               Conread position:
               774-1248
               

               Cow position:
               
               

               Alignm length:
               477
               

               Alignm identity:
               282
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               169, 128
               

               Conread position:
               779-1265
               

               Cow position:
               
               

               Alignm length:
               491
               

               Alignm identity:
               290
               

               Alignm E-value:
               4e-25
               

               Alignm gaps (pig, cow):
               36, 23
               

               Conread position:
               803-1222
               

               Cow position:
               
               

               Alignm length:
               424
               

               Alignm identity:
               261
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               72, 13
               

               Conread position:
               811-1247
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               264
               

               Alignm E-value:
               9e-34
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               823-1247
               

               Cow position:
               
               

               Alignm length:
               426
               

               Alignm identity:
               254
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               832-1296
               

               Cow position:
               
               

               Alignm length:
               472
               

               Alignm identity:
               295
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               57, 7
               

               Conread position:
               834-1207
               

               Cow position:
               
               

               Alignm length:
               375
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 140
               

               Conread position:
               838-1300
               

               Cow position:
               
               

               Alignm length:
               466
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               378, 388
               

               Conread position:
               840-1247
               

               Cow position:
               
               

               Alignm length:
               410
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               128, 121
               

               Conread position:
               840-1253
               

               Cow position:
               
               

               Alignm length:
               415
               

               Alignm identity:
               248
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               53, 58
               

               Conread position:
               843-1154
               

               Cow position:
               
               

               Alignm length:
               312
               

               Alignm identity:
               194
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               845-1247
               

               Cow position:
               
               

               Alignm length:
               406
               

               Alignm identity:
               266
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               5, 72
               

               Conread position:
               858-1209
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               218
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               63, 58
               

               Conread position:
               858-1235
               

               Cow position:
               
               

               Alignm length:
               378
               

               Alignm identity:
               222
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               898-1163
               

               Cow position:
               
               

               Alignm length:
               268
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-26
               

               Alignm gaps (pig, cow):
               218, 248
               

               Conread position:
               910-1276
               

               Cow position:
               
               

               Alignm length:
               371
               

               Alignm identity:
               226
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               296, 305
               

               Conread position:
               914-1226
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               5, 0
               

               Conread position:
               916-1209
               

               Cow position:
               
               

               Alignm length:
               294
               

               Alignm identity:
               182
               

               Alignm E-value:
               8e-22
               

               Alignm gaps (pig, cow):
               189, 0
               

               Conread position:
               918-1208
               

               Cow position:
               
               

               Alignm length:
               293
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-30
               

               Alignm gaps (pig, cow):
               257, 265
               

               Conread position:
               922-1271
               

               Cow position:
               
               

               Alignm length:
               356
               

               Alignm identity:
               221
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               49, 40
               

               Conread position:
               924-1209
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               206
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               143, 134
               

               Conread position:
               979-1247
               

               Cow position:
               
               

               Alignm length:
               270
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-28
               

               Alignm gaps (pig, cow):
               137, 151
               

               Conread position:
               990-1271
               

               Cow position:
               
               

               Alignm length:
               284
               

               Alignm identity:
               176
               

               Alignm E-value:
               7e-21
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               998-1213
               

               Cow position:
               
               

               Alignm length:
               218
               

               Alignm identity:
               149
               

               Alignm E-value:
               1e-24
               

               Alignm gaps (pig, cow):
               135, 129
               

               Conread position:
               1018-1247
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               132, 123
               
Show alignments to all cow chromosomes.