Cow genome map
| Conread name: | Ss1.1-Mixn-0021n04.5 |
| Conread position: | 4-314 |
| Cow position: | chr17:22589707-22589397 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 73, 67 |
| Conread position: | 4-320 |
| Cow position: | chr17:22589539-22589222 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 149, 165 |
| Conread position: | 4-323 |
| Cow position: | chr17:22589875-22589555 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 216 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 4-325 |
| Cow position: | chr17:22452070-22451748 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 86, 91 |
| Conread position: | 5-277 |
| Cow position: | chr17:22589454-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 64, 76 |
| Conread position: | 5-297 |
| Cow position: | chr17:22451901-22451609 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 80, 69 |
| Conread position: | 5-301 |
| Cow position: | chr17:22589790-22589494 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 266, 261 |
| Conread position: | 5-302 |
| Cow position: | chr17:22499167-22498870 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 200 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-314 |
| Cow position: | chr17:22452153-22451844 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-314 |
| Cow position: | chr17:22473310-22473619 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 59, 63 |
| Conread position: | 5-314 |
| Cow position: | chr17:22589958-22589649 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 212 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 154, 165 |
| Conread position: | 5-314 |
| Cow position: | chr17:22590210-22589901 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-40 |
| Alignm gaps (pig, cow): | 68, 76 |
| Conread position: | 5-321 |
| Cow position: | chr17:22590042-22589725 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 308, 0 |
| Conread position: | 6-314 |
| Cow position: | chr17:22589621-22589313 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 209 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 71, 67 |
| Conread position: | 7-292 |
| Cow position: | chr17:22473648-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 203 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 274, 0 |
| Conread position: | 7-322 |
| Cow position: | chr17:22473480-22473796 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 7-341 |
| Cow position: | chr17:22473564-22473899 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 221 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 151, 162 |
| Conread position: | 8-200 |
| Cow position: | chr17:22589367-22589175 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-314 |
| Cow position: | chr17:22499332-22499026 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 8-329 |
| Cow position: | chr17:22553125-22552802 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 301, 0 |
| Conread position: | 9-204 |
| Cow position: | chr17:22551696-22551501 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 134 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-298 |
| Cow position: | chr17:22498827-22498538 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 200 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-302 |
| Cow position: | chr17:22498911-22498618 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-311 |
| Cow position: | chr17:22451981-22451679 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 147 |
| Conread position: | 9-314 |
| Cow position: | chr17:22499247-22498942 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 150 |
| Conread position: | 9-314 |
| Cow position: | chr17:22552032-22551727 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 146 |
| Conread position: | 9-314 |
| Cow position: | chr17:22552368-22552063 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 86, 81 |
| Conread position: | 9-314 |
| Cow position: | chr17:22552956-22552651 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 210 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-319 |
| Cow position: | chr17:22473398-22473708 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 214 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 299, 292 |
| Conread position: | 9-321 |
| Cow position: | chr17:22499079-22498766 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-29 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 9-322 |
| Cow position: | chr17:22552116-22551802 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-322 |
| Cow position: | chr17:22552620-22552306 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-322 |
| Cow position: | chr17:22552788-22552474 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 217 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 86, 81 |
| Conread position: | 9-327 |
| Cow position: | chr17:22551864-22551545 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-327 |
| Cow position: | chr17:22552536-22552217 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 169, 159 |
| Conread position: | 9-338 |
| Cow position: | chr17:22473233-22473560 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 226 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 161, 30 |
| Conread position: | 9-341 |
| Cow position: | chr17:22452401-22452068 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 322 |
| Conread position: | 10-293 |
| Cow position: | chr17:22551947-22551664 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 195 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-299 |
| Cow position: | chr17:22551779-22551490 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-299 |
| Cow position: | chr17:22552199-22551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-301 |
| Cow position: | chr17:22498994-22498703 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 149, 158 |
| Conread position: | 10-314 |
| Cow position: | chr17:22552283-22551979 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 238 |
| Conread position: | 10-314 |
| Cow position: | chr17:22552451-22552147 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 78, 85 |
| Conread position: | 10-314 |
| Cow position: | chr17:22552703-22552399 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 80 |
| Conread position: | 10-314 |
| Cow position: | chr17:22552871-22552567 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 205 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-314 |
| Cow position: | chr17:22590121-22589817 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 54, 58 |
| Conread position: | 10-314 |
| Cow position: | chr17:22590289-22589985 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-328 |
| Cow position: | chr17:22452316-22451997 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 10-342 |
| Cow position: | chr17:22452232-22451900 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 322 |
| Conread position: | 27-314 |
| Cow position: | chr17:22499395-22499110 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 79-320 |
| Cow position: | chr17:22590304-22590062 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 230, 0 |
| Conread position: | 84-302 |
| Cow position: | chr17:22499424-22499206 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 151 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 25, 18 |
Show alignments to all cow chromosomes.