Cow genome map

Conread name: Ss1.1-Mixn-0021n04.5

Conread position: 3-288
Cow position: chr19:14960164-14959881 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 11, 0

Conread position: 4-325
Cow position: chr19:23649278-23649600 (view UCSC Genome Browser custom track)
Alignm length: 324
Alignm identity: 207
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 153, 165

Conread position: 5-185
Cow position: chr19:14940889-14941069 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 129
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 89, 85

Conread position: 5-203
Cow position: chr19:20635236-20635038 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 5-238
Cow position: chr19:14959996-14959765 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 162
Alignm E-value: 6e-27
Alignm gaps (pig, cow): 89, 85

Conread position: 5-254
Cow position: chr19:14940805-14941054 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 167
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position: chr19:23614501-23614810 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 241

Conread position: 5-321
Cow position: chr19:23614249-23614566 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 217
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 165, 151

Conread position: 5-322
Cow position: chr19:23613997-23614315 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 5-328
Cow position: chr19:14960246-14959924 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 93

Conread position: 5-328
Cow position: chr19:14960330-14960008 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 304, 177

Conread position: 5-328
Cow position: chr19:23649447-23649771 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 218
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 304, 0

Conread position: 6-294
Cow position: chr19:20678517-20678802 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 186
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 88, 78

Conread position: 6-302
Cow position: chr19:14916025-14916317 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 201
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 116, 104

Conread position: 6-302
Cow position: chr19:23613830-23614126 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 256, 240

Conread position: 6-314
Cow position: chr19:14960413-14960107 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 263, 0

Conread position: 6-314
Cow position: chr19:23613914-23614222 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 6-314
Cow position: chr19:23614586-23614894 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 165, 156

Conread position: 6-314
Cow position: chr19:43570320-43570022 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 216
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 165, 42

Conread position: 6-321
Cow position: chr19:23614334-23614650 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 159

Conread position: 6-322
Cow position: chr19:20677929-20678246 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 198
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 94, 78

Conread position: 6-322
Cow position: chr19:23614166-23614483 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 169, 162

Conread position: 7-301
Cow position: chr19:23614839-23615131 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 193
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 166, 159

Conread position: 7-314
Cow position: chr19:20635486-20635179 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 152, 163

Conread position: 7-314
Cow position: chr19:20678350-20678657 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 7-321
Cow position: chr19:23613579-23613894 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 8-314
Cow position: chr19:20677847-20678153 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 203
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 147, 161

Conread position: 8-325
Cow position: chr19:14940304-14940622 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 9-205
Cow position: chr19:14959504-14959308 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 166, 147

Conread position: 9-205
Cow position: chr19:14959908-14959714 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 135
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 95, 0

Conread position: 9-206
Cow position: chr19:23597514-23597711 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 136
Alignm E-value: 6e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 9-238
Cow position: chr19:14959099-14958870 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 160
Alignm E-value: 1e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 9-299
Cow position: chr19:14940725-14941015 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 200
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 9-299
Cow position: chr19:20677764-20678054 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 203
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 85, 81

Conread position: 9-300
Cow position: chr19:43569991-43569702 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 201
Alignm E-value: 3e-39
Alignm gaps (pig, cow): 64, 78

Conread position: 9-301
Cow position: chr19:23613413-23613705 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-301
Cow position: chr19:23614085-23614377 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 147, 160

Conread position: 9-302
Cow position: chr19:14959670-14959379 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 200
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 62, 19

Conread position: 9-314
Cow position: chr19:14940473-14940778 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 208
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr19:14959177-14958878 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 159, 58

Conread position: 9-314
Cow position: chr19:20635400-20635095 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr19:20677680-20677985 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr19:20678100-20678405 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 203
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 149, 160

Conread position: 9-314
Cow position: chr19:23597262-23597567 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 208, 212

Conread position: 9-314
Cow position: chr19:23597346-23597651 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 164, 157

Conread position: 9-314
Cow position: chr19:23613497-23613802 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr19:23613749-23614054 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr19:23614757-23615062 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 209
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 70, 65

Conread position: 9-314
Cow position: chr19:23649871-23650177 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 206
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 296, 0

Conread position: 9-314
Cow position: chr19:43570159-43569854 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 9-322
Cow position: chr19:20677596-20677910 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 205
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 148, 160

Conread position: 9-325
Cow position: chr19:14940641-14940958 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 9-325
Cow position: chr19:23597013-23597327 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 300, 20

Conread position: 9-325
Cow position: chr19:23614421-23614738 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 9-328
Cow position: chr19:23649367-23649687 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 205
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 304, 0

Conread position: 9-340
Cow position: chr19:43570075-43569742 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 304, 0

Conread position: 10-250
Cow position: chr19:14948233-14947993 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 161
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 10-267
Cow position: chr19:23650208-23650465 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 213, 208

Conread position: 10-289
Cow position: chr19:14959587-14959308 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 195
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 249, 231

Conread position: 10-292
Cow position: chr19:23597431-23597713 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 196
Alignm E-value: 7e-38
Alignm gaps (pig, cow): 148, 155

Conread position: 10-302
Cow position: chr19:14940558-14940850 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 205
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 84, 73

Conread position: 10-314
Cow position: chr19:14940054-14940358 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 206
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:14940222-14940526 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:14940390-14940694 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 160, 156

Conread position: 10-314
Cow position: chr19:14948401-14948097 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:14959419-14959124 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 200
Alignm E-value: 5e-25
Alignm gaps (pig, cow): 85, 73

Conread position: 10-314
Cow position: chr19:20677513-20677817 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 189
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 39, 46

Conread position: 10-314
Cow position: chr19:23613666-23613970 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 146, 155

Conread position: 10-314
Cow position: chr19:23614674-23614978 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:23649620-23649924 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 205
Alignm E-value: 8.99998e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:23649956-23650260 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr19:43570242-43569938 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 204
Alignm E-value: 8e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 10-322
Cow position: chr19:14960075-14959764 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 258

Conread position: 10-328
Cow position: chr19:14940138-14940457 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 10-328
Cow position: chr19:23597095-23597414 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 220
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 158, 146

Conread position: 10-328
Cow position: chr19:23649788-23650107 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 225
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 48, 57

Conread position: 10-329
Cow position: chr19:14948317-14947997 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 215
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 302, 0

Conread position: 10-329
Cow position: chr19:23649704-23650024 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 0

Conread position: 10-330
Cow position: chr19:23650124-23650445 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 226
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 158, 146

Conread position: 10-341
Cow position: chr19:23649536-23649868 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 216
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 299, 0

Conread position: 10-341
Cow position: chr19:23650040-23650372 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 0

Conread position: 11-299
Cow position: chr19:43570398-43570121 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 199
Alignm E-value: 5e-35
Alignm gaps (pig, cow): 5, 0

Conread position: 13-299
Cow position: chr19:14959257-14958977 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 198
Alignm E-value: 8e-39
Alignm gaps (pig, cow): 138, 0

Conread position: 13-338
Cow position: chr19:23596849-23597172 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 202
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 48, 58

Conread position: 13-350
Cow position: chr19:14939973-14940309 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 221
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 300, 319

Conread position: 15-314
Cow position: chr19:20635646-20635347 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 205
Alignm E-value: 3.9937e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 15-314
Cow position: chr19:20678022-20678321 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 191
Alignm E-value: 9e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 15-314
Cow position: chr19:20678190-20678489 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 206
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 15-315
Cow position: chr19:20678442-20678739 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 195
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 266, 0

Conread position: 16-322
Cow position: chr19:20678275-20678582 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 209
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 61, 56

Conread position: 16-334
Cow position: chr19:20635561-20635243 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 309

Conread position: 17-302
Cow position: chr19:20635308-20635023 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 57, 61

Conread position: 20-314
Cow position: chr19:20677439-20677733 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 183
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 11, 18

Conread position: 21-311
Cow position: chr19:14915955-14916244 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 16

Conread position: 22-324
Cow position: chr19:23597191-23597494 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 147, 135

Conread position: 28-314
Cow position: chr19:14960475-14960189 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 206
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 8, 28

Conread position: 30-325
Cow position: chr19:23613350-23613646 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 283, 0

Conread position: 67-314
Cow position: chr19:14939943-14940190 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 161
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 31

Conread position: 85-314
Cow position: chr19:14959678-14959451 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 157
Alignm E-value: 8e-29
Alignm gaps (pig, cow): 27, 0

Show alignments to all cow chromosomes.