Cow genome map

Conread name: Ss1.1-Mixn-0021n04.5

Conread position: 3-321
Cow position:
Alignm length: 321
Alignm identity: 210
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 156, 162

Conread position: 4-226
Cow position:
Alignm length: 223
Alignm identity: 152
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 198, 0

Conread position: 4-302
Cow position:
Alignm length: 299
Alignm identity: 170
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 4-314
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 4-320
Cow position:
Alignm length: 318
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 0

Conread position: 4-320
Cow position:
Alignm length: 319
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 225, 235

Conread position: 5-204
Cow position:
Alignm length: 200
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 5-292
Cow position:
Alignm length: 288
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-292
Cow position:
Alignm length: 288
Alignm identity: 203
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-300
Cow position:
Alignm length: 296
Alignm identity: 203
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 5-300
Cow position:
Alignm length: 297
Alignm identity: 200
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 229, 239

Conread position: 5-311
Cow position:
Alignm length: 307
Alignm identity: 210
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position:
Alignm length: 310
Alignm identity: 208
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position:
Alignm length: 311
Alignm identity: 208
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 59, 63

Conread position: 5-314
Cow position:
Alignm length: 310
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position:
Alignm length: 311
Alignm identity: 211
Alignm E-value: 9.00054e-42
Alignm gaps (pig, cow): 264, 270

Conread position: 5-321
Cow position:
Alignm length: 319
Alignm identity: 209
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 102, 97

Conread position: 5-321
Cow position:
Alignm length: 318
Alignm identity: 196
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 304, 0

Conread position: 5-321
Cow position:
Alignm length: 319
Alignm identity: 210
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 56, 63

Conread position: 5-322
Cow position:
Alignm length: 321
Alignm identity: 205
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 59, 80

Conread position: 5-322
Cow position:
Alignm length: 322
Alignm identity: 208
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 263, 242

Conread position: 5-327
Cow position:
Alignm length: 324
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 308, 0

Conread position: 5-328
Cow position:
Alignm length: 325
Alignm identity: 213
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 308, 0

Conread position: 5-328
Cow position:
Alignm length: 326
Alignm identity: 213
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 59, 72

Conread position: 5-330
Cow position:
Alignm length: 327
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 0

Conread position: 6-288
Cow position:
Alignm length: 284
Alignm identity: 200
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 228, 237

Conread position: 6-314
Cow position:
Alignm length: 309
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 7-203
Cow position:
Alignm length: 199
Alignm identity: 138
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 70, 76

Conread position: 7-206
Cow position:
Alignm length: 202
Alignm identity: 144
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 70, 77

Conread position: 7-275
Cow position:
Alignm length: 269
Alignm identity: 169
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 0, 0

Conread position: 7-307
Cow position:
Alignm length: 301
Alignm identity: 201
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 7-314
Cow position:
Alignm length: 309
Alignm identity: 206
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 167, 156

Conread position: 7-314
Cow position:
Alignm length: 308
Alignm identity: 208
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 7-314
Cow position:
Alignm length: 311
Alignm identity: 210
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 71, 65

Conread position: 7-321
Cow position:
Alignm length: 319
Alignm identity: 204
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 82, 76

Conread position: 7-322
Cow position:
Alignm length: 319
Alignm identity: 207
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 17, 11

Conread position: 7-329
Cow position:
Alignm length: 325
Alignm identity: 208
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 152, 160

Conread position: 7-338
Cow position:
Alignm length: 336
Alignm identity: 232
Alignm E-value: 4.06377e-44
Alignm gaps (pig, cow): 71, 65

Conread position: 7-343
Cow position:
Alignm length: 341
Alignm identity: 219
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 82, 76

Conread position: 8-314
Cow position:
Alignm length: 307
Alignm identity: 201
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 8-344
Cow position:
Alignm length: 339
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 324

Conread position: 9-291
Cow position:
Alignm length: 284
Alignm identity: 177
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 268, 0

Conread position: 9-311
Cow position:
Alignm length: 303
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position:
Alignm length: 306
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position:
Alignm length: 310
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 26, 19

Conread position: 9-314
Cow position:
Alignm length: 306
Alignm identity: 210
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position:
Alignm length: 306
Alignm identity: 208
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position:
Alignm length: 306
Alignm identity: 214
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position:
Alignm length: 308
Alignm identity: 197
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 165, 147

Conread position: 9-314
Cow position:
Alignm length: 307
Alignm identity: 198
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 164, 159

Conread position: 9-314
Cow position:
Alignm length: 308
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 55, 59

Conread position: 9-322
Cow position:
Alignm length: 315
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 9-329
Cow position:
Alignm length: 323
Alignm identity: 214
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 223, 231

Conread position: 9-329
Cow position:
Alignm length: 323
Alignm identity: 217
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 223, 231

Conread position: 9-330
Cow position:
Alignm length: 323
Alignm identity: 215
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 304, 0

Conread position: 9-331
Cow position:
Alignm length: 324
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 317

Conread position: 9-339
Cow position:
Alignm length: 332
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 323

Conread position: 9-339
Cow position:
Alignm length: 332
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 323

Conread position: 9-341
Cow position:
Alignm length: 335
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 72

Conread position: 9-341
Cow position:
Alignm length: 334
Alignm identity: 219
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 304, 0

Conread position: 10-205
Cow position:
Alignm length: 198
Alignm identity: 136
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 158, 147

Conread position: 10-238
Cow position:
Alignm length: 230
Alignm identity: 151
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 162, 152

Conread position: 10-280
Cow position:
Alignm length: 271
Alignm identity: 185
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 10-307
Cow position:
Alignm length: 300
Alignm identity: 197
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 14, 8

Conread position: 10-313
Cow position:
Alignm length: 304
Alignm identity: 200
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 276, 0

Conread position: 10-314
Cow position:
Alignm length: 307
Alignm identity: 195
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 17

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 201
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 252, 240

Conread position: 10-314
Cow position:
Alignm length: 307
Alignm identity: 202
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 82, 73

Conread position: 10-314
Cow position:
Alignm length: 305
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 217
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 298, 27

Conread position: 10-314
Cow position:
Alignm length: 305
Alignm identity: 201
Alignm E-value: 5e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 65, 75

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 208
Alignm E-value: 3.00004e-41
Alignm gaps (pig, cow): 231, 241

Conread position: 10-314
Cow position:
Alignm length: 305
Alignm identity: 200
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position:
Alignm length: 305
Alignm identity: 209
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 0

Conread position: 10-314
Cow position:
Alignm length: 306
Alignm identity: 195
Alignm E-value: 7e-29
Alignm gaps (pig, cow): 90, 63

Conread position: 10-319
Cow position:
Alignm length: 313
Alignm identity: 198
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 78, 71

Conread position: 10-319
Cow position:
Alignm length: 310
Alignm identity: 212
Alignm E-value: 4.2039e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 10-319
Cow position:
Alignm length: 312
Alignm identity: 207
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 85, 79

Conread position: 10-322
Cow position:
Alignm length: 315
Alignm identity: 204
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 98, 92

Conread position: 10-322
Cow position:
Alignm length: 315
Alignm identity: 211
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 84, 71

Conread position: 10-322
Cow position:
Alignm length: 314
Alignm identity: 213
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 299, 0

Conread position: 10-323
Cow position:
Alignm length: 317
Alignm identity: 213
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 249, 230

Conread position: 10-328
Cow position:
Alignm length: 320
Alignm identity: 215
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 299, 0

Conread position: 10-328
Cow position:
Alignm length: 321
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 10-329
Cow position:
Alignm length: 321
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 0

Conread position: 10-330
Cow position:
Alignm length: 322
Alignm identity: 211
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 303, 0

Conread position: 10-336
Cow position:
Alignm length: 330
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 28, 322

Conread position: 10-337
Cow position:
Alignm length: 329
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 0

Conread position: 10-343
Cow position:
Alignm length: 337
Alignm identity: 213
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 78, 69

Conread position: 11-300
Cow position:
Alignm length: 290
Alignm identity: 195
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 15-302
Cow position:
Alignm length: 289
Alignm identity: 179
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 242, 235

Conread position: 15-314
Cow position:
Alignm length: 304
Alignm identity: 202
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 79, 68

Conread position: 15-314
Cow position:
Alignm length: 301
Alignm identity: 192
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 248, 230

Conread position: 15-321
Cow position:
Alignm length: 311
Alignm identity: 202
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 79, 61

Conread position: 15-322
Cow position:
Alignm length: 311
Alignm identity: 203
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 238, 223

Conread position: 17-321
Cow position:
Alignm length: 307
Alignm identity: 209
Alignm E-value: 8.00001e-41
Alignm gaps (pig, cow): 79, 72

Conread position: 17-321
Cow position:
Alignm length: 310
Alignm identity: 200
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 160, 138

Conread position: 17-322
Cow position:
Alignm length: 308
Alignm identity: 193
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 156, 140

Conread position: 21-299
Cow position:
Alignm length: 280
Alignm identity: 188
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 42, 47

Conread position: 21-314
Cow position:
Alignm length: 295
Alignm identity: 195
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 43, 47

Conread position: 21-337
Cow position:
Alignm length: 321
Alignm identity: 215
Alignm E-value: 5e-36
Alignm gaps (pig, cow): 42, 56

Conread position: 22-314
Cow position:
Alignm length: 296
Alignm identity: 190
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 63, 50

Conread position: 22-322
Cow position:
Alignm length: 306
Alignm identity: 207
Alignm E-value: 4e-34
Alignm gaps (pig, cow): 62, 50

Conread position: 25-240
Cow position:
Alignm length: 218
Alignm identity: 145
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 136, 126

Conread position: 25-323
Cow position:
Alignm length: 302
Alignm identity: 199
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 24, 31

Conread position: 28-314
Cow position:
Alignm length: 287
Alignm identity: 188
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 30-316
Cow position:
Alignm length: 288
Alignm identity: 199
Alignm E-value: 6e-38
Alignm gaps (pig, cow): 17, 83

Conread position: 39-314
Cow position:
Alignm length: 276
Alignm identity: 189
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 40-323
Cow position:
Alignm length: 288
Alignm identity: 185
Alignm E-value: 4e-23
Alignm gaps (pig, cow): 76, 71

Conread position: 47-314
Cow position:
Alignm length: 269
Alignm identity: 174
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 200, 205

Conread position: 57-329
Cow position:
Alignm length: 275
Alignm identity: 184
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 160, 164

Conread position: 83-322
Cow position:
Alignm length: 241
Alignm identity: 159
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 226, 0

Conread position: 92-314
Cow position:
Alignm length: 223
Alignm identity: 147
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 92-314
Cow position:
Alignm length: 223
Alignm identity: 150
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 118-314
Cow position:
Alignm length: 197
Alignm identity: 139
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 0, 0

Show alignments to all cow chromosomes.