Cow genome map
| Conread name: | Ss1.1-Mixn-0021n04.5 |
| Conread position: | 3-311 |
| Cow position: | chr23:24535820-24535512 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 207 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-206 |
| Cow position: | chr23:24639862-24640064 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 4-301 |
| Cow position: | chr23:25626088-25626385 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 190 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 203, 211 |
| Conread position: | 4-310 |
| Cow position: | chr23:24535987-24535681 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 229, 241 |
| Conread position: | 4-314 |
| Cow position: | chr23:24547272-24546962 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-205 |
| Cow position: | chr23:24654176-24654376 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-207 |
| Cow position: | chr23:24560327-24560125 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-267 |
| Cow position: | chr23:24535734-24535472 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-288 |
| Cow position: | chr23:24560411-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-299 |
| Cow position: | chr23:25660294-25660588 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 196 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 97, 92 |
| Conread position: | 5-314 |
| Cow position: | chr23:24560495-24560186 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-321 |
| Cow position: | chr23:24560579-24560262 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 5-327 |
| Cow position: | chr23:24547103-24546780 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 297, 0 |
| Conread position: | 6-314 |
| Cow position: | chr23:24547186-24546878 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-314 |
| Cow position: | chr23:25698680-25698372 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 58, 71 |
| Conread position: | 6-325 |
| Cow position: | chr23:25626006-25626326 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 209 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 9-185 |
| Cow position: | chr23:25723896-25723720 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-236 |
| Cow position: | chr23:25698593-25698366 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 158 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 55, 62 |
| Conread position: | 9-238 |
| Cow position: | chr23:24522421-24522192 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-238 |
| Cow position: | chr23:24535646-24535416 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 200, 0 |
| Conread position: | 9-288 |
| Cow position: | chr23:24546931-24546653 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 276, 0 |
| Conread position: | 9-288 |
| Cow position: | chr23:25626762-25627041 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 182 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-300 |
| Cow position: | chr23:24522670-24522382 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 98, 62 |
| Conread position: | 9-302 |
| Cow position: | chr23:24626455-24626746 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 0 |
| Conread position: | 9-302 |
| Cow position: | chr23:25626678-25626971 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 269, 279 |
| Conread position: | 9-308 |
| Cow position: | chr23:25698509-25698211 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 192 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 180, 201 |
| Conread position: | 9-314 |
| Cow position: | chr23:24522754-24522452 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 182, 149 |
| Conread position: | 9-314 |
| Cow position: | chr23:24547015-24546710 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-314 |
| Cow position: | chr23:25626177-25626482 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-320 |
| Cow position: | chr23:24535898-24535586 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 210 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-321 |
| Cow position: | chr23:24639279-24639593 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 218 |
| Alignm E-value: | 8.00001e-42 |
| Alignm gaps (pig, cow): | 102, 110 |
| Conread position: | 9-328 |
| Cow position: | chr23:24639615-24639935 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-328 |
| Cow position: | chr23:24639699-24640019 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 9-328 |
| Cow position: | chr23:25626261-25626581 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-328 |
| Cow position: | chr23:25698425-25698105 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 76, 68 |
| Conread position: | 9-329 |
| Cow position: | chr23:24639531-24639852 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 307, 0 |
| Conread position: | 10-267 |
| Cow position: | chr23:25723979-25723722 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 153, 157 |
| Conread position: | 10-289 |
| Cow position: | chr23:25660467-25660746 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-320 |
| Cow position: | chr23:24639364-24639675 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 17, 28 |
| Conread position: | 10-320 |
| Cow position: | chr23:24639784-24640095 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 10-324 |
| Cow position: | chr23:24626216-24626519 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 100, 28 |
| Conread position: | 10-325 |
| Cow position: | chr23:25660215-25660531 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 10-326 |
| Cow position: | chr23:24522504-24522187 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 10-327 |
| Cow position: | chr23:24560658-24560340 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 10-328 |
| Cow position: | chr23:24626372-24626691 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 305, 0 |
| Conread position: | 10-328 |
| Cow position: | chr23:24639448-24639767 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 299, 0 |
| Conread position: | 10-328 |
| Cow position: | chr23:25626595-25626914 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 215 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 10-329 |
| Cow position: | chr23:24560910-24560590 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 197, 205 |
| Conread position: | 11-321 |
| Cow position: | chr23:24639197-24639509 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 14-341 |
| Cow position: | chr23:25724143-25723815 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 218 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 15-298 |
| Cow position: | chr23:24654102-24654385 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-314 |
| Cow position: | chr23:25724058-25723759 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 80, 67 |
| Conread position: | 15-328 |
| Cow position: | chr23:24560821-24560507 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 294, 0 |
| Conread position: | 22-325 |
| Cow position: | chr23:25660395-25660699 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 209 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 204, 217 |
| Conread position: | 25-314 |
| Cow position: | chr23:25660146-25660435 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 241, 250 |
| Conread position: | 25-322 |
| Cow position: | chr23:24626303-24626601 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 208 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 29-314 |
| Cow position: | chr23:24522569-24522284 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-329 |
| Cow position: | chr23:24536046-24535745 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 194 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 284, 0 |
| Conread position: | 30-314 |
| Cow position: | chr23:24547330-24547046 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 30-315 |
| Cow position: | chr23:25626534-25626816 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 203 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 49, 0 |
| Conread position: | 30-322 |
| Cow position: | chr23:24560722-24560429 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 31-325 |
| Cow position: | chr23:24522814-24522524 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 244, 27 |
| Conread position: | 39-311 |
| Cow position: | chr23:24654042-24654314 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 183 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 85-314 |
| Cow position: | chr23:25626001-25626230 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 151 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 123-322 |
| Cow position: | chr23:24654042-24654242 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 186, 0 |
Show alignments to all cow chromosomes.