Cow genome map

Conread name: Ss1.1-Mixn-0021n04.5

Conread position: 3-341
Cow position: chr25:346420-346759 (view UCSC Genome Browser custom track)
Alignm length: 340
Alignm identity: 213
Alignm E-value: 7e-31
Alignm gaps (pig, cow): 306, 0

Conread position: 4-293
Cow position: chr25:34447415-34447704 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 199
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 0, 0

Conread position: 4-314
Cow position: chr25:34713923-34714233 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 193
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 52, 46

Conread position: 4-314
Cow position: chr25:34714091-34714401 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 193
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 225, 247

Conread position: 5-230
Cow position: chr25:33305660-33305434 (view UCSC Genome Browser custom track)
Alignm length: 228
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 66, 82

Conread position: 5-292
Cow position: chr25:33127944-33128231 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 195
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 5-302
Cow position: chr25:33305261-33304967 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 202
Alignm E-value: 4e-35
Alignm gaps (pig, cow): 216, 150

Conread position: 5-312
Cow position: chr25:33157247-33156940 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 213
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 251, 258

Conread position: 5-314
Cow position: chr25:33298621-33298930 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 210
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 72, 79

Conread position: 5-314
Cow position: chr25:33305988-33305687 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 201
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 43, 0

Conread position: 5-320
Cow position: chr25:36800689-36801005 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 202
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 304, 0

Conread position: 6-153
Cow position: chr25:36801770-36801917 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 58, 62

Conread position: 6-275
Cow position: chr25:23420610-23420879 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 186
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 6-311
Cow position: chr25:18642196-18641888 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 203
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 127, 243

Conread position: 6-314
Cow position: chr25:33298538-33298846 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 222
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 29, 21

Conread position: 6-314
Cow position: chr25:33305823-33305518 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 208
Alignm E-value: 1e-34
Alignm gaps (pig, cow): 233, 103

Conread position: 6-324
Cow position: chr25:33298706-33299025 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 210
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 303, 0

Conread position: 6-327
Cow position: chr25:33299126-33299448 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 219
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 163, 149

Conread position: 7-314
Cow position: chr25:36800775-36801082 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 201
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 8-301
Cow position: chr25:36801688-36801977 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 198
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 56, 60

Conread position: 8-314
Cow position: chr25:36800944-36801250 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 200
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 240, 222

Conread position: 8-320
Cow position: chr25:33299296-33299609 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 305, 0

Conread position: 8-320
Cow position: chr25:36801520-36801833 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 301, 0

Conread position: 8-321
Cow position: chr25:34770063-34769749 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 301, 0

Conread position: 8-327
Cow position: chr25:36800608-36800928 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 215
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 27, 19

Conread position: 8-339
Cow position: chr25:33299464-33299795 (view UCSC Genome Browser custom track)
Alignm length: 333
Alignm identity: 225
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 301, 322

Conread position: 9-132
Cow position: chr25:34433082-34433205 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 95
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 9-287
Cow position: chr25:34769474-34769196 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 196
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 260, 241

Conread position: 9-289
Cow position: chr25:326985-327265 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 189
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 86, 77

Conread position: 9-293
Cow position: chr25:346510-346794 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 182
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 124, 130

Conread position: 9-300
Cow position: chr25:34433502-34433790 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 192
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 269, 103

Conread position: 9-302
Cow position: chr25:33305340-33305052 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 196
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 22, 0

Conread position: 9-314
Cow position: chr25:33144911-33145213 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 198
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 106, 100

Conread position: 9-314
Cow position: chr25:33299045-33299350 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 215
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 146, 156

Conread position: 9-314
Cow position: chr25:33299381-33299686 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 206
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr25:34447252-34447557 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 211
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 251, 241

Conread position: 9-314
Cow position: chr25:36801113-36801406 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 71, 66

Conread position: 9-317
Cow position: chr25:33298793-33299101 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 6e-40
Alignm gaps (pig, cow): 0, 0

Conread position: 9-319
Cow position: chr25:36800861-36801171 (view UCSC Genome Browser custom track)
Alignm length: 311
Alignm identity: 205
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 9-321
Cow position: chr25:22235891-22236204 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 195
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 222, 227

Conread position: 9-322
Cow position: chr25:34714180-34714494 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 197
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 161, 156

Conread position: 9-322
Cow position: chr25:34769558-34769244 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 303, 0

Conread position: 9-322
Cow position: chr25:34769894-34769580 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 154, 161

Conread position: 9-325
Cow position: chr25:33299213-33299530 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 213
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 208, 215

Conread position: 9-328
Cow position: chr25:34769726-34769406 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 241
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 9-329
Cow position: chr25:23420445-23420766 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 9-337
Cow position: chr25:34770146-34769817 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 9-339
Cow position: chr25:36801605-36801935 (view UCSC Genome Browser custom track)
Alignm length: 332
Alignm identity: 219
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 300, 322

Conread position: 9-341
Cow position: chr25:34447336-34447669 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 9-341
Cow position: chr25:34769642-34769309 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 163, 149

Conread position: 10-156
Cow position: chr25:33145245-33145391 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 106
Alignm E-value: 8e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 10-233
Cow position: chr25:326644-326867 (view UCSC Genome Browser custom track)
Alignm length: 225
Alignm identity: 155
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 77

Conread position: 10-276
Cow position: chr25:326560-326826 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 171
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 77

Conread position: 10-276
Cow position: chr25:366788-367054 (view UCSC Genome Browser custom track)
Alignm length: 268
Alignm identity: 175
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 43

Conread position: 10-302
Cow position: chr25:33157074-33156783 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 210
Alignm E-value: 0
Alignm gaps (pig, cow): 277, 0

Conread position: 10-302
Cow position: chr25:34433587-34433876 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 192
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 184, 20

Conread position: 10-314
Cow position: chr25:25652335-25652639 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 184
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr25:33127865-33128169 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 208
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr25:33145077-33145381 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 201
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 63, 72

Conread position: 10-314
Cow position: chr25:33157158-33156854 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 219, 233

Conread position: 10-314
Cow position: chr25:33298878-33299182 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 195
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr25:34769809-34769505 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr25:34769977-34769673 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr25:36800526-36800830 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 196
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 49, 58

Conread position: 10-321
Cow position: chr25:36801030-36801341 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 84, 80

Conread position: 10-322
Cow position: chr25:34447085-34447398 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 205
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 299, 0

Conread position: 10-322
Cow position: chr25:34447169-34447482 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 206
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 299, 0

Conread position: 10-323
Cow position: chr25:33157410-33157096 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 10-323
Cow position: chr25:33157494-33157180 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 211
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 299, 0

Conread position: 10-325
Cow position: chr25:33298962-33299278 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 213
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 306, 0

Conread position: 10-328
Cow position: chr25:33157326-33157007 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 10-328
Cow position: chr25:34447001-34447320 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 209
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 306, 0

Conread position: 10-329
Cow position: chr25:22235976-22236296 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 207
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 163, 158

Conread position: 10-336
Cow position: chr25:23420530-23420856 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 255

Conread position: 10-342
Cow position: chr25:33127781-33128114 (view UCSC Genome Browser custom track)
Alignm length: 334
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 303, 0

Conread position: 12-317
Cow position: chr25:36801356-36801661 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 200
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 77, 71

Conread position: 13-314
Cow position: chr25:33306396-33306104 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 197
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 59, 0

Conread position: 13-320
Cow position: chr25:326479-326787 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 199
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 22, 29

Conread position: 14-215
Cow position: chr25:34433003-34433204 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 140
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 16-328
Cow position: chr25:33145002-33145312 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 204
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 22, 10

Conread position: 17-285
Cow position: chr25:33145168-33145436 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 176
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 23-301
Cow position: chr25:33298473-33298749 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 185
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 13

Conread position: 25-314
Cow position: chr25:34732614-34732325 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 178
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 25-320
Cow position: chr25:36801453-36801749 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 186
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 130, 144

Conread position: 25-328
Cow position: chr25:23420377-23420681 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 209
Alignm E-value: 8.96831e-44
Alignm gaps (pig, cow): 284, 0

Conread position: 28-274
Cow position: chr25:346613-346858 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 162
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 60, 66

Conread position: 30-341
Cow position: chr25:366724-367036 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 201
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 19, 26

Conread position: 31-293
Cow position: chr25:22235829-22236091 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 178
Alignm E-value: 4e-26
Alignm gaps (pig, cow): 57, 40

Conread position: 32-312
Cow position: chr25:34714035-34714315 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 176
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 48-324
Cow position: chr25:23420316-23420593 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 265, 0

Conread position: 53-322
Cow position: chr25:33144871-33145138 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 178
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 164, 140

Conread position: 55-300
Cow position: chr25:326947-327192 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 168
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 118, 111

Conread position: 55-328
Cow position: chr25:33127742-33128016 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 196
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 254, 0

Conread position: 68-325
Cow position: chr25:34770171-34769913 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 173
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 63, 47

Conread position: 71-314
Cow position: chr25:18642215-18641969 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 160
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 141, 0

Conread position: 84-300
Cow position: chr25:34432989-34433205 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 144
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 86-328
Cow position: chr25:34433495-34433735 (view UCSC Genome Browser custom track)
Alignm length: 244
Alignm identity: 166
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 226, 110

Conread position: 105-311
Cow position: chr25:34446928-34447134 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 135
Alignm E-value: 7e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 129-329
Cow position: chr25:33127732-33127933 (view UCSC Genome Browser custom track)
Alignm length: 203
Alignm identity: 140
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 140, 146

Show alignments to all cow chromosomes.