Cow genome map
| Conread name: | Ss1.1-Mixn-0021n04.5 |
| Conread position: | 4-238 |
| Cow position: | chr28:34673496-34673730 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 152, 162 |
| Conread position: | 4-342 |
| Cow position: | chr28:9290392-9290728 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 230 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 310, 76 |
| Conread position: | 5-213 |
| Cow position: | chr28:9253413-9253621 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 5-299 |
| Cow position: | chr28:11333659-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 190 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 227, 192 |
| Conread position: | 5-302 |
| Cow position: | chr28:34679583-34679286 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 78, 5 |
| Conread position: | 6-278 |
| Cow position: | chr28:9253330-9253602 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 190 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 6-300 |
| Cow position: | chr28:7810248-7810533 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 40, 0 |
| Conread position: | 6-300 |
| Cow position: | chr28:9298876-9299168 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 118, 0 |
| Conread position: | 6-314 |
| Cow position: | chr28:7810566-7810874 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 166, 149 |
| Conread position: | 6-318 |
| Cow position: | chr28:9298709-9299019 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 85, 77 |
| Conread position: | 6-329 |
| Cow position: | chr28:9290147-9290466 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 297, 57 |
| Conread position: | 7-275 |
| Cow position: | chr28:7758064-7758332 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 7-322 |
| Cow position: | chr28:9298628-9298941 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 161, 37 |
| Conread position: | 7-328 |
| Cow position: | chr28:34673583-34673905 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 94, 90 |
| Conread position: | 7-329 |
| Cow position: | chr28:7757812-7758136 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 158 |
| Conread position: | 7-329 |
| Cow position: | chr28:9299365-9299686 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 261, 206 |
| Conread position: | 7-342 |
| Cow position: | chr28:7758552-7758888 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 283, 226 |
| Conread position: | 8-314 |
| Cow position: | chr28:34673416-34673722 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 66, 78 |
| Conread position: | 8-329 |
| Cow position: | chr28:7757645-7757968 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 296, 0 |
| Conread position: | 9-215 |
| Cow position: | chr28:7810737-7810943 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-289 |
| Cow position: | chr28:9299283-9299563 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 191 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 165, 146 |
| Conread position: | 9-301 |
| Cow position: | chr28:9290066-9290354 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 37, 57 |
| Conread position: | 9-314 |
| Cow position: | chr28:7757730-7758035 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 9-314 |
| Cow position: | chr28:7757898-7758203 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 241 |
| Conread position: | 9-314 |
| Cow position: | chr28:9252912-9253218 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 11, 30 |
| Conread position: | 9-314 |
| Cow position: | chr28:9299202-9299504 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 204 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 9-320 |
| Cow position: | chr28:7757478-7757790 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 213 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-320 |
| Cow position: | chr28:7810410-7810713 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 300, 125 |
| Conread position: | 9-322 |
| Cow position: | chr28:34679498-34679181 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 209 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 157, 114 |
| Conread position: | 9-328 |
| Cow position: | chr28:9252997-9253317 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 9-328 |
| Cow position: | chr28:9253249-9253569 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 9-328 |
| Cow position: | chr28:33210290-33210611 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 272, 0 |
| Conread position: | 9-329 |
| Cow position: | chr28:7757562-7757884 (view UCSC Genome Browser custom track) |
| Alignm length: | 323 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 300, 0 |
| Conread position: | 9-342 |
| Cow position: | chr28:11333991-11333658 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 303, 322 |
| Conread position: | 10-279 |
| Cow position: | chr28:11333738-11333469 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 179 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 79, 73 |
| Conread position: | 10-299 |
| Cow position: | chr28:11333822-11333533 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 193 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 158, 140 |
| Conread position: | 10-300 |
| Cow position: | chr28:34695891-34696181 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 97, 77 |
| Conread position: | 10-303 |
| Cow position: | chr28:7758387-7758680 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 204 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-314 |
| Cow position: | chr28:9253166-9253470 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 10-320 |
| Cow position: | chr28:9253082-9253393 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 303, 0 |
| Conread position: | 10-328 |
| Cow position: | chr28:34696227-34696546 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 92, 79 |
| Conread position: | 10-329 |
| Cow position: | chr28:7757983-7758304 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 147, 155 |
| Conread position: | 12-300 |
| Cow position: | chr28:9289982-9290269 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 51, 226 |
| Conread position: | 12-305 |
| Cow position: | chr28:7810656-7810949 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 149, 153 |
| Conread position: | 12-329 |
| Cow position: | chr28:7757397-7757716 (view UCSC Genome Browser custom track) |
| Alignm length: | 320 |
| Alignm identity: | 219 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 292, 0 |
| Conread position: | 22-267 |
| Cow position: | chr28:34696323-34696568 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 158 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 74, 67 |
| Conread position: | 27-329 |
| Cow position: | chr28:33210223-33210527 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 200 |
| Alignm E-value: | 7e-32 |
| Alignm gaps (pig, cow): | 5, 213 |
| Conread position: | 29-300 |
| Cow position: | chr28:34673353-34673624 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 201, 210 |
| Conread position: | 30-319 |
| Cow position: | chr28:7758323-7758613 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 159 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 34-329 |
| Cow position: | chr28:7757335-7757632 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 44, 49 |
| Conread position: | 46-314 |
| Cow position: | chr28:34695843-34696111 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 145, 135 |
| Conread position: | 79-314 |
| Cow position: | chr28:7810555-7810790 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 91, 76 |
Show alignments to all cow chromosomes.