Cow genome map

Conread name: Ss1.1-Mixn-0021n04.5

Conread position: 3-153
Cow position: chr7:18390638-18390788 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 112
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 91, 87

Conread position: 5-277
Cow position: chr7:42878546-42878274 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 181
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 0, 0

Conread position: 5-301
Cow position: chr7:42878966-42878670 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position: chr7:3179923-3180232 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position: chr7:42878882-42878573 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position: chr7:42879134-42878825 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-314
Cow position: chr7:42879218-42878909 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 5-323
Cow position: chr7:42879050-42878731 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 5-325
Cow position: chr7:42878630-42878309 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 297, 0

Conread position: 5-327
Cow position: chr7:42878798-42878475 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 225
Alignm E-value: 5.60519e-45
Alignm gaps (pig, cow): 55, 63

Conread position: 5-328
Cow position: chr7:1014997-1015321 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 151, 164

Conread position: 5-328
Cow position: chr7:3180259-3180583 (view UCSC Genome Browser custom track)
Alignm length: 325
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 307, 0

Conread position: 6-193
Cow position: chr7:11600624-11600437 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 133
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 0, 0

Conread position: 6-301
Cow position: chr7:1438392-1438687 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 185
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 56, 67

Conread position: 6-302
Cow position: chr7:1439700-1439993 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 189
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 68, 0

Conread position: 6-314
Cow position: chr7:1439950-1440257 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 198
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 21, 0

Conread position: 7-238
Cow position: chr7:8325885-8326116 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 162
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 172, 150

Conread position: 7-327
Cow position: chr7:1439867-1440186 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 211
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 104, 0

Conread position: 8-236
Cow position: chr7:1440035-1440263 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 157
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 0, 0

Conread position: 8-314
Cow position: chr7:8325634-8325940 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 195
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 0, 0

Conread position: 8-314
Cow position: chr7:8325802-8326108 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 213
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 87, 67

Conread position: 8-322
Cow position: chr7:8243196-8243510 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 203
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 86, 81

Conread position: 8-322
Cow position: chr7:8325298-8325613 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 224
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 75, 67

Conread position: 8-328
Cow position: chr7:3180430-3180751 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 301, 0

Conread position: 8-334
Cow position: chr7:18390139-18390465 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 214
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 301, 324

Conread position: 9-204
Cow position: chr7:3180683-3180877 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 143
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 145, 113

Conread position: 9-209
Cow position: chr7:1015253-1015453 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 146
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 9-237
Cow position: chr7:18390560-18390788 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 165
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 154, 160

Conread position: 9-300
Cow position: chr7:8277574-8277865 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 188
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 85, 71

Conread position: 9-302
Cow position: chr7:8243700-8243993 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 189
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 150, 170

Conread position: 9-303
Cow position: chr7:1014335-1014629 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 198
Alignm E-value: 9e-39
Alignm gaps (pig, cow): 0, 0

Conread position: 9-314
Cow position: chr7:8243281-8243585 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 194
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 87, 75

Conread position: 9-314
Cow position: chr7:8243784-8244087 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 193
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 212, 0

Conread position: 9-314
Cow position: chr7:8324879-8325184 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 213
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 86, 71

Conread position: 9-314
Cow position: chr7:8325131-8325436 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 199
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 150, 161

Conread position: 9-314
Cow position: chr7:18390056-18390361 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 197
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 36, 51

Conread position: 9-314
Cow position: chr7:42878710-42878405 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 9-321
Cow position: chr7:8277658-8277971 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 86, 66

Conread position: 9-322
Cow position: chr7:1014833-1015147 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 9-322
Cow position: chr7:1439448-1439766 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 202
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 246, 137

Conread position: 9-322
Cow position: chr7:3180179-3180493 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 304, 0

Conread position: 9-322
Cow position: chr7:8243029-8243343 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 149, 160

Conread position: 9-322
Cow position: chr7:8277406-8277720 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 198
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 224, 238

Conread position: 9-322
Cow position: chr7:8324795-8325109 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 207
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 300, 0

Conread position: 9-322
Cow position: chr7:8325551-8325865 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 211
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 85, 77

Conread position: 9-323
Cow position: chr7:11601209-11600894 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 55, 59

Conread position: 9-325
Cow position: chr7:3179759-3180076 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 300, 0

Conread position: 9-328
Cow position: chr7:1015085-1015405 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 295, 0

Conread position: 9-329
Cow position: chr7:1014917-1015238 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 215
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 300, 0

Conread position: 9-336
Cow position: chr7:3180347-3180674 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 293, 323

Conread position: 9-338
Cow position: chr7:18390392-18390722 (view UCSC Genome Browser custom track)
Alignm length: 331
Alignm identity: 224
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 300, 0

Conread position: 10-243
Cow position: chr7:11434508-11434275 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 156
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 84, 74

Conread position: 10-277
Cow position: chr7:11600704-11600437 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 193
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 67, 63

Conread position: 10-289
Cow position: chr7:3180516-3180795 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 0, 0

Conread position: 10-311
Cow position: chr7:8325048-8325349 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 212
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 63, 75

Conread position: 10-314
Cow position: chr7:3179844-3180148 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 210
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr7:8243617-8243921 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 193
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr7:8324964-8325268 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 207
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 86, 65

Conread position: 10-314
Cow position: chr7:11601040-11600736 (view UCSC Genome Browser custom track)
Alignm length: 305
Alignm identity: 201
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 0, 0

Conread position: 10-314
Cow position: chr7:18390225-18390529 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 207
Alignm E-value: 3e-40
Alignm gaps (pig, cow): 39, 43

Conread position: 10-317
Cow position: chr7:8277323-8277630 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 194
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 177, 171

Conread position: 10-320
Cow position: chr7:3180096-3180407 (view UCSC Genome Browser custom track)
Alignm length: 312
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 10-321
Cow position: chr7:8242946-8243258 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 191
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 292, 0

Conread position: 10-323
Cow position: chr7:11600956-11600642 (view UCSC Genome Browser custom track)
Alignm length: 316
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 153, 160

Conread position: 10-328
Cow position: chr7:1015170-1015491 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 221
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 293, 284

Conread position: 10-328
Cow position: chr7:3180012-3180331 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 237
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 10-329
Cow position: chr7:1014750-1015070 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 0

Conread position: 10-343
Cow position: chr7:18390309-18390642 (view UCSC Genome Browser custom track)
Alignm length: 335
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 305, 321

Conread position: 11-301
Cow position: chr7:11434668-11434385 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 188
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 83, 61

Conread position: 14-299
Cow position: chr7:11600868-11600583 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 201
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 14-341
Cow position: chr7:18390481-18390809 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 292, 282

Conread position: 15-314
Cow position: chr7:8325473-8325772 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 203
Alignm E-value: 2e-36
Alignm gaps (pig, cow): 79, 57

Conread position: 16-314
Cow position: chr7:8278001-8278299 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 206
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 78, 64

Conread position: 16-321
Cow position: chr7:11600782-11600476 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 297, 0

Conread position: 16-338
Cow position: chr7:11601118-11600795 (view UCSC Genome Browser custom track)
Alignm length: 326
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 61, 57

Conread position: 17-298
Cow position: chr7:8278170-8278451 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 186
Alignm E-value: 8e-27
Alignm gaps (pig, cow): 74, 59

Conread position: 18-313
Cow position: chr7:8277499-8277794 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 184
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 76, 66

Conread position: 19-314
Cow position: chr7:8325729-8326024 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 203
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 53, 74

Conread position: 19-322
Cow position: chr7:8277836-8278140 (view UCSC Genome Browser custom track)
Alignm length: 310
Alignm identity: 206
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 30, 37

Conread position: 21-314
Cow position: chr7:42879370-42879077 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 188
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 0, 0

Conread position: 25-342
Cow position: chr7:1014267-1014584 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 215
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 288, 306

Conread position: 27-302
Cow position: chr7:8243382-8243657 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 182
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 68, 47

Conread position: 27-314
Cow position: chr7:8324729-8325016 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 192
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 68, 51

Conread position: 28-314
Cow position: chr7:42879277-42878993 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 199
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 9, 0

Conread position: 37-314
Cow position: chr7:8242805-8243082 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 177
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 57, 41

Conread position: 44-314
Cow position: chr7:3179710-3179980 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 185
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 67-338
Cow position: chr7:1014225-1014497 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 184
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 29, 21

Conread position: 74-314
Cow position: chr7:11601228-11600988 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 168
Alignm E-value: 7e-36
Alignm gaps (pig, cow): 0, 0

Conread position: 94-325
Cow position: chr7:11434508-11434276 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 160
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 65, 75

Show alignments to all cow chromosomes.