Cow genome map

Conread name: Ss1.1-Mixn-0027d03.5

Conread position: 13-178
Cow position: chr26:12238317-12238155 (view UCSC Genome Browser custom track)
Alignm length: 167
Alignm identity: 124
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 132

Conread position: 24-182
Cow position: chr26:31701550-31701712 (view UCSC Genome Browser custom track)
Alignm length: 164
Alignm identity: 120
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 13, 6

Conread position: 25-180
Cow position: chr26:32058389-32058547 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 114
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 9, 0

Conread position: 25-182
Cow position: chr26:9491667-9491819 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 120
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 44, 90

Conread position: 25-182
Cow position: chr26:32018956-32019117 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 117
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 10, 0

Conread position: 25-184
Cow position: chr26:35704124-35704285 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 48, 0

Conread position: 25-234
Cow position: chr26:6188032-6188251 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 153
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 134

Conread position: 25-269
Cow position: chr26:23926241-23925990 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 178
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 8, 105

Conread position: 26-180
Cow position: chr26:2676277-2676122 (view UCSC Genome Browser custom track)
Alignm length: 156
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 43, 0

Conread position: 26-182
Cow position: chr26:8277832-8277673 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 120
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 47, 0

Conread position: 26-182
Cow position: chr26:14898068-14898224 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 26-182
Cow position: chr26:25737211-25737364 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 45, 119

Conread position: 30-178
Cow position: chr26:32898130-32897982 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 119
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 8, 118

Conread position: 31-179
Cow position: chr26:17401507-17401654 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 111
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 42, 100

Conread position: 31-223
Cow position: chr26:18918326-18918132 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 146
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 6, 136

Conread position: 33-144
Cow position: chr26:33044826-33044940 (view UCSC Genome Browser custom track)
Alignm length: 115
Alignm identity: 92
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 15, 0

Conread position: 34-175
Cow position: chr26:25393778-25393917 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 110
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 90

Conread position: 34-180
Cow position: chr26:12807768-12807625 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 118
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 40, 57

Conread position: 34-180
Cow position: chr26:16549726-16549876 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 12, 0

Conread position: 34-182
Cow position: chr26:11361689-11361533 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 117
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 12, 0

Conread position: 34-182
Cow position: chr26:27491756-27491608 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 114
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 14, 44

Conread position: 34-182
Cow position: chr26:28442259-28442117 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 114
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 14, 40

Conread position: 36-165
Cow position: chr26:6714533-6714403 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 100
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 37, 0

Conread position: 36-167
Cow position: chr26:21418701-21418569 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 103
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 34, 10

Conread position: 36-179
Cow position: chr26:26466968-26466831 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 54, 0

Conread position: 36-181
Cow position: chr26:6447857-6447711 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 115
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 56, 0

Conread position: 36-181
Cow position: chr26:8352709-8352854 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 118
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 0, 0

Conread position: 36-181
Cow position: chr26:11370684-11370826 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 109
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 37, 98

Conread position: 36-181
Cow position: chr26:20846371-20846519 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 117
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 12, 0

Conread position: 36-182
Cow position: chr26:6323415-6323560 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 111
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 37, 117

Conread position: 36-182
Cow position: chr26:9867364-9867224 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 111, 0

Conread position: 36-182
Cow position: chr26:11263387-11263534 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 115
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 38, 0

Conread position: 36-182
Cow position: chr26:14510248-14510107 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 111
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 123, 0

Conread position: 36-182
Cow position: chr26:14958265-14958122 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 14, 49

Conread position: 36-182
Cow position: chr26:16783572-16783717 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 113
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 37, 72

Conread position: 36-184
Cow position: chr26:9104531-9104387 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 112
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 32, 94

Conread position: 36-249
Cow position: chr26:8307755-8307549 (view UCSC Genome Browser custom track)
Alignm length: 217
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 196, 36

Conread position: 36-265
Cow position: chr26:3706550-3706785 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 166
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 37, 0

Conread position: 36-272
Cow position: chr26:10768151-10767914 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 167
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 13, 79

Conread position: 36-276
Cow position: chr26:8810882-8811133 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 182
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 33, 107

Conread position: 36-277
Cow position: chr26:23097426-23097183 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 184
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 37, 12

Conread position: 36-331
Cow position: chr26:23600043-23599751 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 207
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 9, 110

Conread position: 37-180
Cow position: chr26:13801862-13802006 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 115
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 37-182
Cow position: chr26:32381054-32381198 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 36, 0

Conread position: 38-177
Cow position: chr26:2702264-2702128 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 107
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 71, 0

Conread position: 38-181
Cow position: chr26:2246700-2246846 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 35, 0

Conread position: 38-182
Cow position: chr26:6827918-6828062 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 30, 118

Conread position: 38-182
Cow position: chr26:19447672-19447532 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 116
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 35, 44

Conread position: 38-182
Cow position: chr26:19769333-19769188 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 35, 0

Conread position: 38-182
Cow position: chr26:19842340-19842486 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 110
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 30, 0

Conread position: 38-182
Cow position: chr26:25442138-25441995 (view UCSC Genome Browser custom track)
Alignm length: 147
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 30, 109

Conread position: 38-221
Cow position: chr26:613921-613736 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 132
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 35, 138

Conread position: 39-164
Cow position: chr26:25028594-25028720 (view UCSC Genome Browser custom track)
Alignm length: 127
Alignm identity: 97
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 22, 0

Conread position: 39-182
Cow position: chr26:29353759-29353614 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 37, 0

Conread position: 40-158
Cow position: chr26:16167159-16167039 (view UCSC Genome Browser custom track)
Alignm length: 121
Alignm identity: 95
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 28, 0

Conread position: 40-179
Cow position: chr26:11134942-11134803 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 111
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 33, 64

Conread position: 40-179
Cow position: chr26:13270924-13270784 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 112
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 28, 0

Conread position: 40-179
Cow position: chr26:30752110-30751974 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 107
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 30, 105

Conread position: 40-181
Cow position: chr26:8746081-8745936 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 112
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 28, 0

Conread position: 40-181
Cow position: chr26:13021395-13021253 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 114
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 33, 0

Conread position: 40-182
Cow position: chr26:4585456-4585315 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 116
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 36, 103

Conread position: 40-182
Cow position: chr26:6322351-6322494 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 28, 0

Conread position: 40-182
Cow position: chr26:6498010-6498153 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 40-182
Cow position: chr26:7525714-7525575 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 111
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 33, 94

Conread position: 40-182
Cow position: chr26:10209231-10209087 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 106
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 34, 0

Conread position: 40-182
Cow position: chr26:14174050-14174193 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 28, 0

Conread position: 40-182
Cow position: chr26:15857430-15857573 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 117
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 33, 0

Conread position: 40-182
Cow position: chr26:22180254-22180397 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 30, 0

Conread position: 40-182
Cow position: chr26:30806758-30806615 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 109
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 29, 0

Conread position: 40-182
Cow position: chr26:31889844-31889986 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 40-182
Cow position: chr26:34847497-34847635 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 84, 0

Conread position: 40-184
Cow position: chr26:27063916-27063777 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 108
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 43, 0

Conread position: 40-269
Cow position: chr26:3072209-3071972 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 170
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 27, 122

Conread position: 41-181
Cow position: chr26:29576142-29576279 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 33, 93

Conread position: 41-182
Cow position: chr26:3182194-3182052 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 41-184
Cow position: chr26:13706242-13706109 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 110
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 32, 0

Conread position: 42-179
Cow position: chr26:32013386-32013517 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 110
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 33, 93

Conread position: 43-178
Cow position: chr26:7148541-7148406 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 106
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 43-182
Cow position: chr26:20129919-20129778 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 105
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 11, 0

Conread position: 44-182
Cow position: chr26:20182518-20182662 (view UCSC Genome Browser custom track)
Alignm length: 145
Alignm identity: 114
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 25, 0

Conread position: 44-182
Cow position: chr26:26888376-26888237 (view UCSC Genome Browser custom track)
Alignm length: 140
Alignm identity: 103
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 29, 0

Conread position: 44-269
Cow position: chr26:8700292-8700052 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 29, 0

Conread position: 45-181
Cow position: chr26:24280588-24280720 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 108
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 28, 100

Conread position: 46-182
Cow position: chr26:32652963-32652833 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 47-181
Cow position: chr26:6793702-6793834 (view UCSC Genome Browser custom track)
Alignm length: 136
Alignm identity: 107
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 26, 113

Conread position: 47-184
Cow position: chr26:31061961-31062095 (view UCSC Genome Browser custom track)
Alignm length: 139
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 26, 100

Conread position: 48-182
Cow position: chr26:27163209-27163344 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 104
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 25, 77

Conread position: 48-183
Cow position: chr26:30034643-30034513 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 105
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 20, 86

Conread position: 48-226
Cow position: chr26:21351450-21351636 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 136
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 136, 77

Conread position: 51-176
Cow position: chr26:17057448-17057570 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 104
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 108, 0

Conread position: 52-182
Cow position: chr26:6793906-6794037 (view UCSC Genome Browser custom track)
Alignm length: 132
Alignm identity: 101
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 21, 0

Conread position: 52-182
Cow position: chr26:28319331-28319206 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 103
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 20, 0

Conread position: 58-234
Cow position: chr26:19774531-19774344 (view UCSC Genome Browser custom track)
Alignm length: 191
Alignm identity: 143
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 126, 104

Conread position: 66-182
Cow position: chr26:21637256-21637140 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 94
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 72, 85

Show alignments to all cow chromosomes.