Cow genome map
| Conread name: | Ss1.1-Mixn-0027p17.5 |
| Conread position: | 1-556 |
| Cow position: | chr23:766388-766949 (view UCSC Genome Browser custom track) |
| Alignm length: | 567 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 26-390 |
| Cow position: | chr23:758142-757759 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 14, 53 |
| Conread position: | 64-629 |
| Cow position: | chr23:859813-859211 (view UCSC Genome Browser custom track) |
| Alignm length: | 606 |
| Alignm identity: | 390 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 33, 233 |
| Conread position: | 64-629 |
| Cow position: | chr23:882474-881902 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 381 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 33, 217 |
| Conread position: | 78-754 |
| Cow position: | chr23:781611-782290 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 478 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 170, 146 |
| Conread position: | 79-555 |
| Cow position: | chr23:775762-776236 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 77, 7 |
| Conread position: | 79-629 |
| Cow position: | chr23:823699-823114 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 378 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 71, 18 |
| Conread position: | 110-457 |
| Cow position: | chr23:789023-788687 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 12, 90 |
| Conread position: | 112-475 |
| Cow position: | chr23:876396-876023 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 248 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 112-631 |
| Cow position: | chr23:838075-837555 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 349 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 7, 91 |
| Conread position: | 114-433 |
| Cow position: | chr23:823437-823112 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 85, 100 |
| Conread position: | 114-433 |
| Cow position: | chr23:851787-851462 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 216 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 114-433 |
| Cow position: | chr23:856473-856148 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 114-433 |
| Cow position: | chr23:882225-881900 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 214 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 32, 38 |
| Conread position: | 114-547 |
| Cow position: | chr23:837970-837540 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 51, 119 |
| Conread position: | 118-547 |
| Cow position: | chr23:823568-823112 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 118-547 |
| Cow position: | chr23:859635-859209 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 292 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 118-547 |
| Cow position: | chr23:882326-881900 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 293 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 118-547 |
| Cow position: | chr23:889264-888843 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 289 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 39, 64 |
| Conread position: | 118-672 |
| Cow position: | chr23:838113-837541 (view UCSC Genome Browser custom track) |
| Alignm length: | 581 |
| Alignm identity: | 365 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 28, 34 |
| Conread position: | 118-791 |
| Cow position: | chr23:838203-837550 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 437 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 32, 6 |
| Conread position: | 120-433 |
| Cow position: | chr23:876327-876008 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 120-468 |
| Cow position: | chr23:837889-837532 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 224 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 120-514 |
| Cow position: | chr23:823461-823058 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 250 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 87, 117 |
| Conread position: | 120-547 |
| Cow position: | chr23:851886-851462 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 293 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 23, 62 |
| Conread position: | 120-798 |
| Cow position: | chr23:781797-782515 (view UCSC Genome Browser custom track) |
| Alignm length: | 724 |
| Alignm identity: | 525 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 19, 32 |
| Conread position: | 121-479 |
| Cow position: | chr23:882206-881839 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 250 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 35, 265 |
| Conread position: | 122-624 |
| Cow position: | chr23:859709-859201 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 323 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 23, 412 |
| Conread position: | 131-547 |
| Cow position: | chr23:876439-876008 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 282 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 131-629 |
| Cow position: | chr23:851953-851464 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 119 |
| Conread position: | 134-569 |
| Cow position: | chr23:813917-813460 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 301 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 23, 51 |
| Conread position: | 139-547 |
| Cow position: | chr23:856547-856148 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 240 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 177, 87 |
| Conread position: | 144-631 |
| Cow position: | chr23:882419-881915 (view UCSC Genome Browser custom track) |
| Alignm length: | 511 |
| Alignm identity: | 336 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 144-635 |
| Cow position: | chr23:865197-864707 (view UCSC Genome Browser custom track) |
| Alignm length: | 508 |
| Alignm identity: | 323 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 144-672 |
| Cow position: | chr23:889387-888844 (view UCSC Genome Browser custom track) |
| Alignm length: | 554 |
| Alignm identity: | 359 |
| Alignm E-value: | 8e-40 |
| Alignm gaps (pig, cow): | 6, 11 |
| Conread position: | 160-433 |
| Cow position: | chr23:789029-788741 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 197 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 39, 102 |
| Conread position: | 162-672 |
| Cow position: | chr23:876540-876009 (view UCSC Genome Browser custom track) |
| Alignm length: | 540 |
| Alignm identity: | 344 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 39, 94 |
| Conread position: | 177-557 |
| Cow position: | chr23:775906-776280 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 71, 49 |
| Conread position: | 193-668 |
| Cow position: | chr23:775805-776277 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 177, 202 |
| Conread position: | 204-749 |
| Cow position: | chr23:823674-823117 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 364 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 93, 103 |
| Conread position: | 204-749 |
| Cow position: | chr23:859771-859214 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 366 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 163, 86 |
| Conread position: | 204-761 |
| Cow position: | chr23:889400-888851 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 361 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 163, 86 |
| Conread position: | 204-782 |
| Cow position: | chr23:852054-851480 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 369 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 162, 86 |
| Conread position: | 208-528 |
| Cow position: | chr23:789053-788730 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 215 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 44, 33 |
| Conread position: | 234-658 |
| Cow position: | chr23:766507-766940 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 290 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 18, 7 |
| Conread position: | 242-629 |
| Cow position: | chr23:856549-856150 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 231 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 128, 171 |
| Conread position: | 278-749 |
| Cow position: | chr23:851950-851467 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 325 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 39, 208 |
| Conread position: | 281-528 |
| Cow position: | chr23:801089-800830 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 35, 0 |
| Conread position: | 319-672 |
| Cow position: | chr23:813843-813485 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 319-749 |
| Cow position: | chr23:882359-881905 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 308 |
| Alignm E-value: | 6e-37 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 319-761 |
| Cow position: | chr23:876467-876016 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 299 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 319-774 |
| Cow position: | chr23:889327-888868 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 295 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 319-782 |
| Cow position: | chr23:823601-823130 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 319-782 |
| Cow position: | chr23:859698-859227 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 304 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 10, 17 |
| Conread position: | 320-668 |
| Cow position: | chr23:789028-788689 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 227 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 60, 50 |
| Conread position: | 321-749 |
| Cow position: | chr23:865210-864773 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 290 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 42, 169 |
| Conread position: | 325-774 |
| Cow position: | chr23:882383-881925 (view UCSC Genome Browser custom track) |
| Alignm length: | 468 |
| Alignm identity: | 288 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 36, 204 |
| Conread position: | 328-678 |
| Cow position: | chr23:856547-856173 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 215 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 86, 97 |
| Conread position: | 337-668 |
| Cow position: | chr23:758047-757724 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 207, 121 |
| Conread position: | 373-754 |
| Cow position: | chr23:766532-766895 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 267 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 171, 83 |
| Conread position: | 379-678 |
| Cow position: | chr23:789041-788736 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 52, 73 |
| Conread position: | 382-749 |
| Cow position: | chr23:876491-876103 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 32, 151 |
| Conread position: | 424-769 |
| Cow position: | chr23:775805-776142 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 120, 34 |
| Conread position: | 425-749 |
| Cow position: | chr23:856491-856153 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 436-766 |
| Cow position: | chr23:789071-788741 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 42, 166 |
| Conread position: | 436-798 |
| Cow position: | chr23:775964-776326 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 164, 86 |
| Conread position: | 549-769 |
| Cow position: | chr23:781725-781937 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 178 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 121 |
Show alignments to all cow chromosomes.