Cow genome map
| Conread name: | Ss1.1-Mixn-0032m21.5 |
| Conread position: | 26-322 |
| Cow position: | chr14:3060956-3060663 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 195 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 265, 46 |
| Conread position: | 35-492 |
| Cow position: | chr14:3061791-3061333 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 18, 51 |
| Conread position: | 61-492 |
| Cow position: | chr14:3061680-3061249 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 159, 148 |
| Conread position: | 62-379 |
| Cow position: | chr14:3080364-3080047 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 69-486 |
| Cow position: | chr14:3061336-3060916 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 270 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 72, 67 |
| Conread position: | 70-322 |
| Cow position: | chr14:434132-434384 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 174 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 146, 140 |
| Conread position: | 70-377 |
| Cow position: | chr14:3060999-3060692 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 139 |
| Conread position: | 70-465 |
| Cow position: | chr14:680461-680856 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 70-470 |
| Cow position: | chr14:3061251-3060851 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 263 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 246, 236 |
| Conread position: | 81-460 |
| Cow position: | chr14:680808-681187 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 228 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 81-467 |
| Cow position: | chr14:25895615-25896001 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 138, 130 |
| Conread position: | 84-340 |
| Cow position: | chr14:3155577-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-379 |
| Cow position: | chr14:434062-434357 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-450 |
| Cow position: | chr14:680727-681093 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 239 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 281, 318 |
| Conread position: | 84-460 |
| Cow position: | chr14:680559-680935 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-464 |
| Cow position: | chr14:447841-448221 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 249 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 198, 206 |
| Conread position: | 84-465 |
| Cow position: | chr14:3080426-3080045 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 134, 127 |
| Conread position: | 84-465 |
| Cow position: | chr14:3127938-3127557 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 283, 290 |
| Conread position: | 84-465 |
| Cow position: | chr14:25895450-25895831 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 244 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 313, 317 |
| Conread position: | 84-466 |
| Cow position: | chr14:680307-680689 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 84-467 |
| Cow position: | chr14:447673-448056 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 137, 144 |
| Conread position: | 86-460 |
| Cow position: | chr14:3061403-3061029 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 195, 204 |
| Conread position: | 90-493 |
| Cow position: | chr14:680397-680800 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 91-460 |
| Cow position: | chr14:433817-434186 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 261 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 126, 119 |
| Conread position: | 92-468 |
| Cow position: | chr14:3128013-3127638 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 359, 9 |
| Conread position: | 97-340 |
| Cow position: | chr14:3079909-3079666 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 97-465 |
| Cow position: | chr14:3080917-3080549 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 232 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 32, 37 |
| Conread position: | 97-490 |
| Cow position: | chr14:25895715-25896108 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 244 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 100-260 |
| Cow position: | chr14:3155677-3155837 (view UCSC Genome Browser custom track) |
| Alignm length: | 162 |
| Alignm identity: | 119 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 30, 36 |
| Conread position: | 100-324 |
| Cow position: | chr14:448025-448249 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 43, 48 |
| Conread position: | 100-490 |
| Cow position: | chr14:3061053-3060663 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 260 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 27, 34 |
| Conread position: | 100-492 |
| Cow position: | chr14:433910-434302 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-333 |
| Cow position: | chr14:3156251-3156483 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-377 |
| Cow position: | chr14:663386-663110 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 186 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-424 |
| Cow position: | chr14:3155510-3155833 (view UCSC Genome Browser custom track) |
| Alignm length: | 325 |
| Alignm identity: | 211 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 294, 298 |
| Conread position: | 101-460 |
| Cow position: | chr14:680240-680599 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 228 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-463 |
| Cow position: | chr14:25895383-25895745 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 231 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-464 |
| Cow position: | chr14:3156083-3156446 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-465 |
| Cow position: | chr14:447522-447886 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 235 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 217, 213 |
| Conread position: | 101-465 |
| Cow position: | chr14:3080745-3080381 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 242 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 119, 113 |
| Conread position: | 101-465 |
| Cow position: | chr14:25895887-25896251 (view UCSC Genome Browser custom track) |
| Alignm length: | 366 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 101-467 |
| Cow position: | chr14:25895299-25895665 (view UCSC Genome Browser custom track) |
| Alignm length: | 368 |
| Alignm identity: | 238 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 262, 256 |
| Conread position: | 101-487 |
| Cow position: | chr14:25895047-25895433 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 250 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 117, 109 |
| Conread position: | 101-490 |
| Cow position: | chr14:433995-434384 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 271 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-490 |
| Cow position: | chr14:3080241-3079852 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 117, 108 |
| Conread position: | 101-504 |
| Cow position: | chr14:3061136-3060734 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 189 |
| Conread position: | 106-504 |
| Cow position: | chr14:3061467-3061070 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 28 |
| Conread position: | 107-394 |
| Cow position: | chr14:3127579-3127292 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 113, 97 |
| Conread position: | 107-451 |
| Cow position: | chr14:447780-448124 (view UCSC Genome Browser custom track) |
| Alignm length: | 347 |
| Alignm identity: | 234 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 259, 267 |
| Conread position: | 107-459 |
| Cow position: | chr14:3128083-3127731 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-464 |
| Cow position: | chr14:3080823-3080466 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 111, 107 |
| Conread position: | 107-465 |
| Cow position: | chr14:3080067-3079709 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 230 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-465 |
| Cow position: | chr14:3127747-3127389 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-465 |
| Cow position: | chr14:3155432-3155790 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 230 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 111, 102 |
| Conread position: | 107-465 |
| Cow position: | chr14:25895137-25895495 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 36, 41 |
| Conread position: | 107-467 |
| Cow position: | chr14:3080571-3080211 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 233 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-467 |
| Cow position: | chr14:3127663-3127303 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-468 |
| Cow position: | chr14:680666-681027 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 107-492 |
| Cow position: | chr14:25895221-25895606 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 108-379 |
| Cow position: | chr14:3079982-3079711 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 189 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 109-460 |
| Cow position: | chr14:663462-663111 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 222 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 98, 93 |
| Conread position: | 109-460 |
| Cow position: | chr14:25895811-25896162 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 214 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 266, 280 |
| Conread position: | 110-465 |
| Cow position: | chr14:25895560-25895915 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 194, 207 |
| Conread position: | 110-468 |
| Cow position: | chr14:25894972-25895330 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 193, 206 |
| Conread position: | 113-513 |
| Cow position: | chr14:3061796-3061395 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 282, 286 |
| Conread position: | 119-465 |
| Cow position: | chr14:433761-434107 (view UCSC Genome Browser custom track) |
| Alignm length: | 349 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 41 |
| Conread position: | 130-465 |
| Cow position: | chr14:680185-680520 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 207 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 158-467 |
| Cow position: | chr14:663496-663188 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 209 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 124, 22 |
| Conread position: | 160-393 |
| Cow position: | chr14:182-415 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 158 |
| Alignm E-value: | 9e-23 |
| Alignm gaps (pig, cow): | 151, 157 |
| Conread position: | 172-477 |
| Cow position: | chr14:447509-447812 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 295, 0 |
| Conread position: | 194-460 |
| Cow position: | chr14:3128164-3127898 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 26, 21 |
| Conread position: | 217-467 |
| Cow position: | chr14:433775-434025 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 37, 30 |
Show alignments to all cow chromosomes.