Cow genome map

Conread name: Ss1.1-Mixn-0032m21.5

Conread position: 1-497
Cow position: chr25:3675913-3676403 (view UCSC Genome Browser custom track)
Alignm length: 498
Alignm identity: 352
Alignm E-value: 0
Alignm gaps (pig, cow): 216, 8

Conread position: 1-540
Cow position: chr25:33506660-33507202 (view UCSC Genome Browser custom track)
Alignm length: 543
Alignm identity: 514
Alignm E-value: 0
Alignm gaps (pig, cow): 66, 0

Conread position: 18-460
Cow position: chr25:33530236-33530687 (view UCSC Genome Browser custom track)
Alignm length: 453
Alignm identity: 317
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 369

Conread position: 25-460
Cow position: chr25:3663873-3664305 (view UCSC Genome Browser custom track)
Alignm length: 438
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 40

Conread position: 25-464
Cow position: chr25:4657529-4657087 (view UCSC Genome Browser custom track)
Alignm length: 446
Alignm identity: 307
Alignm E-value: 0
Alignm gaps (pig, cow): 35, 24

Conread position: 31-465
Cow position: chr25:33530005-33530440 (view UCSC Genome Browser custom track)
Alignm length: 441
Alignm identity: 309
Alignm E-value: 0
Alignm gaps (pig, cow): 10, 51

Conread position: 37-352
Cow position: chr25:3636272-3635960 (view UCSC Genome Browser custom track)
Alignm length: 317
Alignm identity: 204
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 181, 34

Conread position: 44-518
Cow position: chr25:33528974-33529443 (view UCSC Genome Browser custom track)
Alignm length: 476
Alignm identity: 318
Alignm E-value: 0
Alignm gaps (pig, cow): 331, 8

Conread position: 50-377
Cow position: chr25:24385030-24384705 (view UCSC Genome Browser custom track)
Alignm length: 330
Alignm identity: 220
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 6, 19

Conread position: 52-331
Cow position: chr25:3637045-3636761 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 189
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 19, 43

Conread position: 56-370
Cow position: chr25:22941321-22941009 (view UCSC Genome Browser custom track)
Alignm length: 319
Alignm identity: 216
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 71, 34

Conread position: 57-538
Cow position: chr25:33530366-33530850 (view UCSC Genome Browser custom track)
Alignm length: 488
Alignm identity: 327
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 15

Conread position: 59-509
Cow position: chr25:24385191-24384740 (view UCSC Genome Browser custom track)
Alignm length: 454
Alignm identity: 298
Alignm E-value: 0
Alignm gaps (pig, cow): 165, 141

Conread position: 60-463
Cow position: chr25:24385441-24385039 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 267
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 42, 30

Conread position: 61-460
Cow position: chr25:25652916-25653318 (view UCSC Genome Browser custom track)
Alignm length: 403
Alignm identity: 284
Alignm E-value: 0
Alignm gaps (pig, cow): 17, 0

Conread position: 69-504
Cow position: chr25:3636495-3636061 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 280
Alignm E-value: 0
Alignm gaps (pig, cow): 406, 399

Conread position: 70-490
Cow position: chr25:34473575-34473992 (view UCSC Genome Browser custom track)
Alignm length: 423
Alignm identity: 289
Alignm E-value: 0
Alignm gaps (pig, cow): 53, 63

Conread position: 73-521
Cow position: chr25:34473659-34474105 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 296
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 5, 69

Conread position: 76-376
Cow position: chr25:326485-326787 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 193
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 32, 0

Conread position: 76-422
Cow position: chr25:33530471-33530817 (view UCSC Genome Browser custom track)
Alignm length: 348
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 302, 311

Conread position: 76-460
Cow position: chr25:33530219-33530603 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 261
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 79-504
Cow position: chr25:25652685-25653109 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 304
Alignm E-value: 0
Alignm gaps (pig, cow): 397, 382

Conread position: 79-504
Cow position: chr25:33530138-33530562 (view UCSC Genome Browser custom track)
Alignm length: 427
Alignm identity: 286
Alignm E-value: 0
Alignm gaps (pig, cow): 299, 309

Conread position: 80-415
Cow position: chr25:24398744-24398409 (view UCSC Genome Browser custom track)
Alignm length: 336
Alignm identity: 224
Alignm E-value: 2.94273e-44
Alignm gaps (pig, cow): 0, 0

Conread position: 82-454
Cow position: chr25:22940521-22940148 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 232
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 5, 139

Conread position: 85-460
Cow position: chr25:34763161-34763533 (view UCSC Genome Browser custom track)
Alignm length: 376
Alignm identity: 238
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 293, 0

Conread position: 86-295
Cow position: chr25:33529266-33529475 (view UCSC Genome Browser custom track)
Alignm length: 210
Alignm identity: 142
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 86-429
Cow position: chr25:4657381-4657038 (view UCSC Genome Browser custom track)
Alignm length: 347
Alignm identity: 232
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 10, 16

Conread position: 86-450
Cow position: chr25:24398987-24398626 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 229
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 143, 123

Conread position: 86-466
Cow position: chr25:24385248-24384868 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 265
Alignm E-value: 0
Alignm gaps (pig, cow): 50, 41

Conread position: 86-468
Cow position: chr25:25652272-25652654 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 132, 124

Conread position: 88-493
Cow position: chr25:3636560-3636155 (view UCSC Genome Browser custom track)
Alignm length: 407
Alignm identity: 274
Alignm E-value: 0
Alignm gaps (pig, cow): 207, 211

Conread position: 90-450
Cow position: chr25:33127723-33128082 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 305, 8

Conread position: 91-403
Cow position: chr25:3664272-3664584 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 92-427
Cow position: chr25:3636303-3635969 (view UCSC Genome Browser custom track)
Alignm length: 337
Alignm identity: 234
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 8

Conread position: 92-459
Cow position: chr25:23267406-23267046 (view UCSC Genome Browser custom track)
Alignm length: 369
Alignm identity: 240
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 269, 107

Conread position: 97-504
Cow position: chr25:25652199-25652605 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 303
Alignm E-value: 0
Alignm gaps (pig, cow): 352, 361

Conread position: 100-331
Cow position: chr25:3676174-3676405 (view UCSC Genome Browser custom track)
Alignm length: 232
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 100-335
Cow position: chr25:24398640-24398405 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 156
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 100-464
Cow position: chr25:33529112-33529476 (view UCSC Genome Browser custom track)
Alignm length: 366
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 306, 311

Conread position: 100-465
Cow position: chr25:3664029-3664394 (view UCSC Genome Browser custom track)
Alignm length: 367
Alignm identity: 259
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 287

Conread position: 101-318
Cow position: chr25:25653127-25653344 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 160
Alignm E-value: 4e-37
Alignm gaps (pig, cow): 204, 199

Conread position: 101-340
Cow position: chr25:23267236-23266997 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 165
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 92, 20

Conread position: 101-352
Cow position: chr25:3664366-3664614 (view UCSC Genome Browser custom track)
Alignm length: 252
Alignm identity: 169
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 234, 0

Conread position: 101-379
Cow position: chr25:22236012-22236290 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 186
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 117, 111

Conread position: 101-450
Cow position: chr25:33157290-33156941 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 226
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 117, 109

Conread position: 101-459
Cow position: chr25:24385317-24384959 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 35

Conread position: 101-460
Cow position: chr25:25652539-25652898 (view UCSC Genome Browser custom track)
Alignm length: 360
Alignm identity: 264
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 101-464
Cow position: chr25:3664198-3664561 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 294, 300

Conread position: 101-467
Cow position: chr25:25652455-25652821 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 262
Alignm E-value: 0
Alignm gaps (pig, cow): 117, 110

Conread position: 101-468
Cow position: chr25:33298998-33299365 (view UCSC Genome Browser custom track)
Alignm length: 368
Alignm identity: 220
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 0, 0

Conread position: 101-504
Cow position: chr25:25652371-25652773 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 282
Alignm E-value: 0
Alignm gaps (pig, cow): 180, 189

Conread position: 101-512
Cow position: chr25:25652623-25653035 (view UCSC Genome Browser custom track)
Alignm length: 416
Alignm identity: 296
Alignm E-value: 0
Alignm gaps (pig, cow): 29, 37

Conread position: 105-465
Cow position: chr25:33157370-33157010 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 234
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 113, 106

Conread position: 106-453
Cow position: chr25:34732588-34732241 (view UCSC Genome Browser custom track)
Alignm length: 350
Alignm identity: 220
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 285, 271

Conread position: 106-463
Cow position: chr25:22235933-22236290 (view UCSC Genome Browser custom track)
Alignm length: 361
Alignm identity: 226
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 37, 44

Conread position: 107-303
Cow position: chr25:427350-427546 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 131
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 107-394
Cow position: chr25:34733988-34733701 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 196
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 271, 280

Conread position: 107-408
Cow position: chr25:33529203-33529504 (view UCSC Genome Browser custom track)
Alignm length: 303
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 281, 277

Conread position: 107-460
Cow position: chr25:25652797-25653150 (view UCSC Genome Browser custom track)
Alignm length: 354
Alignm identity: 254
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 107-463
Cow position: chr25:34473528-34473881 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 246
Alignm E-value: 0
Alignm gaps (pig, cow): 337, 0

Conread position: 107-493
Cow position: chr25:24385059-24384673 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 268
Alignm E-value: 0
Alignm gaps (pig, cow): 309, 318

Conread position: 109-454
Cow position: chr25:22941354-22941009 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 230
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 29, 21

Conread position: 109-465
Cow position: chr25:25652883-25653239 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 109, 101

Conread position: 110-468
Cow position: chr25:3636370-3636012 (view UCSC Genome Browser custom track)
Alignm length: 359
Alignm identity: 250
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 110-512
Cow position: chr25:3664123-3664526 (view UCSC Genome Browser custom track)
Alignm length: 405
Alignm identity: 285
Alignm E-value: 0
Alignm gaps (pig, cow): 285, 292

Conread position: 116-460
Cow position: chr25:34762859-34763200 (view UCSC Genome Browser custom track)
Alignm length: 346
Alignm identity: 215
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 250, 258

Conread position: 149-378
Cow position: chr25:34763474-34763703 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 156
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 70, 65

Conread position: 149-393
Cow position: chr25:427308-427552 (view UCSC Genome Browser custom track)
Alignm length: 245
Alignm identity: 154
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 149-463
Cow position: chr25:34763141-34763455 (view UCSC Genome Browser custom track)
Alignm length: 315
Alignm identity: 204
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 0, 0

Conread position: 149-469
Cow position: chr25:33298626-33298946 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 195
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 80, 85

Conread position: 149-469
Cow position: chr25:33298710-33299030 (view UCSC Genome Browser custom track)
Alignm length: 321
Alignm identity: 193
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 155-495
Cow position: chr25:34734025-34733681 (view UCSC Genome Browser custom track)
Alignm length: 345
Alignm identity: 229
Alignm E-value: 6.00036e-42
Alignm gaps (pig, cow): 13, 0

Conread position: 159-423
Cow position: chr25:36844463-36844206 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 173
Alignm E-value: 7e-22
Alignm gaps (pig, cow): 253, 108

Conread position: 159-424
Cow position: chr25:23267262-23266997 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 175
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 118, 46

Conread position: 161-450
Cow position: chr25:326488-326777 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 177
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 0, 0

Conread position: 161-465
Cow position: chr25:22940525-22940221 (view UCSC Genome Browser custom track)
Alignm length: 309
Alignm identity: 206
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 64, 53

Conread position: 161-487
Cow position: chr25:36844545-36844228 (view UCSC Genome Browser custom track)
Alignm length: 327
Alignm identity: 203
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 201, 0

Conread position: 166-463
Cow position: chr25:33157477-33157180 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 192
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 57, 48

Conread position: 167-346
Cow position: chr25:24398990-24398811 (view UCSC Genome Browser custom track)
Alignm length: 181
Alignm identity: 135
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 18, 9

Conread position: 169-465
Cow position: chr25:25652187-25652483 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 175-467
Cow position: chr25:4657460-4657168 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 44, 35

Conread position: 175-487
Cow position: chr25:24398733-24398421 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 192
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 301, 293

Conread position: 184-461
Cow position: chr25:3637079-3636799 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 188
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 57, 0

Conread position: 185-349
Cow position: chr25:24399212-24399048 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 117
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 194-487
Cow position: chr25:22235853-22236146 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 184
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 17

Conread position: 243-465
Cow position: chr25:4657476-4657254 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 163
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 159, 149

Conread position: 244-472
Cow position: chr25:5034965-5034739 (view UCSC Genome Browser custom track)
Alignm length: 230
Alignm identity: 153
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 140, 14

Conread position: 249-504
Cow position: chr25:3663926-3664180 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 176
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 245, 0

Conread position: 256-506
Cow position: chr25:34473509-34473759 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 168
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 131, 121

Show alignments to all cow chromosomes.