Cow genome map


           Conread name:
           Ss1.1-Mixn-0032m21.5
        

               Conread position:
               1-497
               

               Cow position:
               
               

               Alignm length:
               498
               

               Alignm identity:
               352
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               216, 8
               

               Conread position:
               1-540
               

               Cow position:
               
               

               Alignm length:
               543
               

               Alignm identity:
               514
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               66, 0
               

               Conread position:
               18-460
               

               Cow position:
               
               

               Alignm length:
               453
               

               Alignm identity:
               317
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 369
               

               Conread position:
               25-460
               

               Cow position:
               
               

               Alignm length:
               438
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 40
               

               Conread position:
               25-464
               

               Cow position:
               
               

               Alignm length:
               446
               

               Alignm identity:
               307
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               35, 24
               

               Conread position:
               31-465
               

               Cow position:
               
               

               Alignm length:
               441
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 51
               

               Conread position:
               37-352
               

               Cow position:
               
               

               Alignm length:
               317
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               181, 34
               

               Conread position:
               44-518
               

               Cow position:
               
               

               Alignm length:
               476
               

               Alignm identity:
               318
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               331, 8
               

               Conread position:
               50-377
               

               Cow position:
               
               

               Alignm length:
               330
               

               Alignm identity:
               220
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               6, 19
               

               Conread position:
               52-331
               

               Cow position:
               
               

               Alignm length:
               288
               

               Alignm identity:
               189
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               19, 43
               

               Conread position:
               56-370
               

               Cow position:
               
               

               Alignm length:
               319
               

               Alignm identity:
               216
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               71, 34
               

               Conread position:
               57-538
               

               Cow position:
               
               

               Alignm length:
               488
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 15
               

               Conread position:
               59-509
               

               Cow position:
               
               

               Alignm length:
               454
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               165, 141
               

               Conread position:
               60-463
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               267
               

               Alignm E-value:
               2.8026e-45
               

               Alignm gaps (pig, cow):
               42, 30
               

               Conread position:
               61-460
               

               Cow position:
               
               

               Alignm length:
               403
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               69-504
               

               Cow position:
               
               

               Alignm length:
               437
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               406, 399
               

               Conread position:
               70-490
               

               Cow position:
               
               

               Alignm length:
               423
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 63
               

               Conread position:
               73-521
               

               Cow position:
               
               

               Alignm length:
               455
               

               Alignm identity:
               296
               

               Alignm E-value:
               8.40779e-45
               

               Alignm gaps (pig, cow):
               5, 69
               

               Conread position:
               76-376
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               32, 0
               

               Conread position:
               76-422
               

               Cow position:
               
               

               Alignm length:
               348
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               302, 311
               

               Conread position:
               76-460
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               79-504
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               397, 382
               

               Conread position:
               79-504
               

               Cow position:
               
               

               Alignm length:
               427
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               299, 309
               

               Conread position:
               80-415
               

               Cow position:
               
               

               Alignm length:
               336
               

               Alignm identity:
               224
               

               Alignm E-value:
               2.94273e-44
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               82-454
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               232
               

               Alignm E-value:
               4e-28
               

               Alignm gaps (pig, cow):
               5, 139
               

               Conread position:
               85-460
               

               Cow position:
               
               

               Alignm length:
               376
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               293, 0
               

               Conread position:
               86-295
               

               Cow position:
               
               

               Alignm length:
               210
               

               Alignm identity:
               142
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               86-429
               

               Cow position:
               
               

               Alignm length:
               347
               

               Alignm identity:
               232
               

               Alignm E-value:
               5.99994e-41
               

               Alignm gaps (pig, cow):
               10, 16
               

               Conread position:
               86-450
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               143, 123
               

               Conread position:
               86-466
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 41
               

               Conread position:
               86-468
               

               Cow position:
               
               

               Alignm length:
               385
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               132, 124
               

               Conread position:
               88-493
               

               Cow position:
               
               

               Alignm length:
               407
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               207, 211
               

               Conread position:
               90-450
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               305, 8
               

               Conread position:
               91-403
               

               Cow position:
               
               

               Alignm length:
               313
               

               Alignm identity:
               219
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               92-427
               

               Cow position:
               
               

               Alignm length:
               337
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 8
               

               Conread position:
               92-459
               

               Cow position:
               
               

               Alignm length:
               369
               

               Alignm identity:
               240
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               269, 107
               

               Conread position:
               97-504
               

               Cow position:
               
               

               Alignm length:
               409
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               352, 361
               

               Conread position:
               100-331
               

               Cow position:
               
               

               Alignm length:
               232
               

               Alignm identity:
               166
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               100-335
               

               Cow position:
               
               

               Alignm length:
               236
               

               Alignm identity:
               156
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               100-464
               

               Cow position:
               
               

               Alignm length:
               366
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               306, 311
               

               Conread position:
               100-465
               

               Cow position:
               
               

               Alignm length:
               367
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               279, 287
               

               Conread position:
               101-318
               

               Cow position:
               
               

               Alignm length:
               219
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-37
               

               Alignm gaps (pig, cow):
               204, 199
               

               Conread position:
               101-340
               

               Cow position:
               
               

               Alignm length:
               242
               

               Alignm identity:
               165
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               92, 20
               

               Conread position:
               101-352
               

               Cow position:
               
               

               Alignm length:
               252
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-29
               

               Alignm gaps (pig, cow):
               234, 0
               

               Conread position:
               101-379
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               186
               

               Alignm E-value:
               2e-30
               

               Alignm gaps (pig, cow):
               117, 111
               

               Conread position:
               101-450
               

               Cow position:
               
               

               Alignm length:
               352
               

               Alignm identity:
               226
               

               Alignm E-value:
               9e-35
               

               Alignm gaps (pig, cow):
               117, 109
               

               Conread position:
               101-459
               

               Cow position:
               
               

               Alignm length:
               364
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               26, 35
               

               Conread position:
               101-460
               

               Cow position:
               
               

               Alignm length:
               360
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               101-464
               

               Cow position:
               
               

               Alignm length:
               365
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               294, 300
               

               Conread position:
               101-467
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 110
               

               Conread position:
               101-468
               

               Cow position:
               
               

               Alignm length:
               368
               

               Alignm identity:
               220
               

               Alignm E-value:
               3e-25
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               101-504
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               180, 189
               

               Conread position:
               101-512
               

               Cow position:
               
               

               Alignm length:
               416
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               29, 37
               

               Conread position:
               105-465
               

               Cow position:
               
               

               Alignm length:
               362
               

               Alignm identity:
               234
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               113, 106
               

               Conread position:
               106-453
               

               Cow position:
               
               

               Alignm length:
               350
               

               Alignm identity:
               220
               

               Alignm E-value:
               5e-30
               

               Alignm gaps (pig, cow):
               285, 271
               

               Conread position:
               106-463
               

               Cow position:
               
               

               Alignm length:
               361
               

               Alignm identity:
               226
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               37, 44
               

               Conread position:
               107-303
               

               Cow position:
               
               

               Alignm length:
               197
               

               Alignm identity:
               131
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-394
               

               Cow position:
               
               

               Alignm length:
               289
               

               Alignm identity:
               196
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               271, 280
               

               Conread position:
               107-408
               

               Cow position:
               
               

               Alignm length:
               303
               

               Alignm identity:
               220
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               281, 277
               

               Conread position:
               107-460
               

               Cow position:
               
               

               Alignm length:
               354
               

               Alignm identity:
               254
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               107-463
               

               Cow position:
               
               

               Alignm length:
               357
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               337, 0
               

               Conread position:
               107-493
               

               Cow position:
               
               

               Alignm length:
               390
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               309, 318
               

               Conread position:
               109-454
               

               Cow position:
               
               

               Alignm length:
               349
               

               Alignm identity:
               230
               

               Alignm E-value:
               4e-38
               

               Alignm gaps (pig, cow):
               29, 21
               

               Conread position:
               109-465
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               109, 101
               

               Conread position:
               110-468
               

               Cow position:
               
               

               Alignm length:
               359
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               110-512
               

               Cow position:
               
               

               Alignm length:
               405
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               285, 292
               

               Conread position:
               116-460
               

               Cow position:
               
               

               Alignm length:
               346
               

               Alignm identity:
               215
               

               Alignm E-value:
               4e-27
               

               Alignm gaps (pig, cow):
               250, 258
               

               Conread position:
               149-378
               

               Cow position:
               
               

               Alignm length:
               231
               

               Alignm identity:
               156
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               70, 65
               

               Conread position:
               149-393
               

               Cow position:
               
               

               Alignm length:
               245
               

               Alignm identity:
               154
               

               Alignm E-value:
               6e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               149-463
               

               Cow position:
               
               

               Alignm length:
               315
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-35
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               149-469
               

               Cow position:
               
               

               Alignm length:
               322
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               80, 85
               

               Conread position:
               149-469
               

               Cow position:
               
               

               Alignm length:
               321
               

               Alignm identity:
               193
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               155-495
               

               Cow position:
               
               

               Alignm length:
               345
               

               Alignm identity:
               229
               

               Alignm E-value:
               6.00036e-42
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               159-423
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               173
               

               Alignm E-value:
               7e-22
               

               Alignm gaps (pig, cow):
               253, 108
               

               Conread position:
               159-424
               

               Cow position:
               
               

               Alignm length:
               267
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               118, 46
               

               Conread position:
               161-450
               

               Cow position:
               
               

               Alignm length:
               290
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               161-465
               

               Cow position:
               
               

               Alignm length:
               309
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               64, 53
               

               Conread position:
               161-487
               

               Cow position:
               
               

               Alignm length:
               327
               

               Alignm identity:
               203
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               201, 0
               

               Conread position:
               166-463
               

               Cow position:
               
               

               Alignm length:
               299
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-29
               

               Alignm gaps (pig, cow):
               57, 48
               

               Conread position:
               167-346
               

               Cow position:
               
               

               Alignm length:
               181
               

               Alignm identity:
               135
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               18, 9
               

               Conread position:
               169-465
               

               Cow position:
               
               

               Alignm length:
               297
               

               Alignm identity:
               223
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               175-467
               

               Cow position:
               
               

               Alignm length:
               295
               

               Alignm identity:
               218
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 35
               

               Conread position:
               175-487
               

               Cow position:
               
               

               Alignm length:
               314
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               301, 293
               

               Conread position:
               184-461
               

               Cow position:
               
               

               Alignm length:
               281
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               185-349
               

               Cow position:
               
               

               Alignm length:
               165
               

               Alignm identity:
               117
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               194-487
               

               Cow position:
               
               

               Alignm length:
               296
               

               Alignm identity:
               184
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               24, 17
               

               Conread position:
               243-465
               

               Cow position:
               
               

               Alignm length:
               224
               

               Alignm identity:
               163
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               159, 149
               

               Conread position:
               244-472
               

               Cow position:
               
               

               Alignm length:
               230
               

               Alignm identity:
               153
               

               Alignm E-value:
               8e-24
               

               Alignm gaps (pig, cow):
               140, 14
               

               Conread position:
               249-504
               

               Cow position:
               
               

               Alignm length:
               256
               

               Alignm identity:
               176
               

               Alignm E-value:
               1e-35
               

               Alignm gaps (pig, cow):
               245, 0
               

               Conread position:
               256-506
               

               Cow position:
               
               

               Alignm length:
               254
               

               Alignm identity:
               168
               

               Alignm E-value:
               3e-24
               

               Alignm gaps (pig, cow):
               131, 121
               
Show alignments to all cow chromosomes.