Cow genome map
| Conread name: | Ss1.1-Mixn-0032m21.5 |
| Conread position: | 22-430 |
| Cow position: | chr4:65702860-65702452 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 264 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 22-469 |
| Cow position: | chr4:65702938-65702495 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 23-469 |
| Cow position: | chr4:65121467-65121916 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 296 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 48, 120 |
| Conread position: | 26-295 |
| Cow position: | chr4:65121087-65121349 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 13, 0 |
| Conread position: | 36-359 |
| Cow position: | chr4:65157882-65158205 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 30, 12 |
| Conread position: | 38-530 |
| Cow position: | chr4:65261605-65261108 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 324 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 15, 107 |
| Conread position: | 56-469 |
| Cow position: | chr4:65495056-65494636 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 57-427 |
| Cow position: | chr4:65121838-65122207 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 234 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 13, 215 |
| Conread position: | 69-342 |
| Cow position: | chr4:65546458-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 193 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 9, 75 |
| Conread position: | 69-469 |
| Cow position: | chr4:65350364-65350761 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 256 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 249, 121 |
| Conread position: | 69-504 |
| Cow position: | chr4:65349944-65350378 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 289 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 92, 78 |
| Conread position: | 70-340 |
| Cow position: | chr4:65494700-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 70 |
| Conread position: | 70-465 |
| Cow position: | chr4:65350113-65350504 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 261 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 70-469 |
| Cow position: | chr4:65121601-65122000 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 239 |
| Conread position: | 70-518 |
| Cow position: | chr4:65703599-65703151 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 63 |
| Conread position: | 71-490 |
| Cow position: | chr4:65121686-65122105 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 275 |
| Alignm E-value: | 3.9937e-43 |
| Alignm gaps (pig, cow): | 85, 91 |
| Conread position: | 73-504 |
| Cow position: | chr4:65350032-65350460 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 76, 53 |
| Conread position: | 79-504 |
| Cow position: | chr4:65703674-65703250 (view UCSC Genome Browser custom track) |
| Alignm length: | 429 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 58 |
| Conread position: | 79-516 |
| Cow position: | chr4:65261730-65261289 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 279 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 48, 87 |
| Conread position: | 80-394 |
| Cow position: | chr4:65350455-65350770 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 7, 56 |
| Conread position: | 85-421 |
| Cow position: | chr4:65157837-65158182 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 45, 55 |
| Conread position: | 86-424 |
| Cow position: | chr4:65494767-65494429 (view UCSC Genome Browser custom track) |
| Alignm length: | 343 |
| Alignm identity: | 242 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 124, 136 |
| Conread position: | 86-529 |
| Cow position: | chr4:65350297-65350733 (view UCSC Genome Browser custom track) |
| Alignm length: | 445 |
| Alignm identity: | 283 |
| Alignm E-value: | 8.99998e-41 |
| Alignm gaps (pig, cow): | 129, 124 |
| Conread position: | 97-469 |
| Cow position: | chr4:65494840-65494468 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 200, 212 |
| Conread position: | 99-247 |
| Cow position: | chr4:65402054-65402202 (view UCSC Genome Browser custom track) |
| Alignm length: | 149 |
| Alignm identity: | 115 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 100-469 |
| Cow position: | chr4:65261622-65261253 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 26 |
| Conread position: | 101-380 |
| Cow position: | chr4:65146519-65146796 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 29, 35 |
| Conread position: | 107-426 |
| Cow position: | chr4:65146441-65146760 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 226, 242 |
| Conread position: | 148-517 |
| Cow position: | chr4:65702900-65702534 (view UCSC Genome Browser custom track) |
| Alignm length: | 371 |
| Alignm identity: | 233 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 258, 263 |
| Conread position: | 160-426 |
| Cow position: | chr4:65546447-65546181 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 19, 260 |
| Conread position: | 162-406 |
| Cow position: | chr4:65121132-65121376 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 137, 147 |
| Conread position: | 165-463 |
| Cow position: | chr4:65157833-65158140 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 75, 153 |
| Conread position: | 167-518 |
| Cow position: | chr4:65146417-65146769 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 238 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 133, 142 |
| Conread position: | 172-490 |
| Cow position: | chr4:65401869-65402193 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 49, 38 |
| Conread position: | 177-343 |
| Cow position: | chr4:65402048-65402214 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 119 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 180-377 |
| Cow position: | chr4:65422458-65422661 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 139 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 79, 0 |
| Conread position: | 184-336 |
| Cow position: | chr4:65146941-65147093 (view UCSC Genome Browser custom track) |
| Alignm length: | 154 |
| Alignm identity: | 111 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 116, 125 |
| Conread position: | 235-474 |
| Cow position: | chr4:65146402-65146640 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 173 |
| Alignm E-value: | 7e-38 |
| Alignm gaps (pig, cow): | 171, 14 |
| Conread position: | 247-533 |
| Cow position: | chr4:65546444-65546154 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 15, 23 |
| Conread position: | 257-492 |
| Cow position: | chr4:65495022-65494781 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 162 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 126, 132 |
| Conread position: | 268-469 |
| Cow position: | chr4:65121154-65121355 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 143 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 31, 41 |
Show alignments to all cow chromosomes.