Cow genome map
| Conread name: | Ss1.1-Mixn-0032m21.5 | 
| Conread position: | 70-465 | 
| Cow position: | chr6:49428632-49429027 (view UCSC Genome Browser custom track) | 
| Alignm length: | 398 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 140, 148 | 
| Conread position: | 70-504 | 
| Cow position: | chr6:49428548-49428981 (view UCSC Genome Browser custom track) | 
| Alignm length: | 435 | 
| Alignm identity: | 293 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 429, 0 | 
| Conread position: | 76-492 | 
| Cow position: | chr6:49428890-49429306 (view UCSC Genome Browser custom track) | 
| Alignm length: | 418 | 
| Alignm identity: | 275 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 235, 242 | 
| Conread position: | 81-463 | 
| Cow position: | chr6:49428391-49428773 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 280 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 30, 26 | 
| Conread position: | 81-465 | 
| Cow position: | chr6:49429063-49429447 (view UCSC Genome Browser custom track) | 
| Alignm length: | 386 | 
| Alignm identity: | 246 | 
| Alignm E-value: | 2e-39 | 
| Alignm gaps (pig, cow): | 231, 236 | 
| Conread position: | 100-465 | 
| Cow position: | chr6:49428830-49429195 (view UCSC Genome Browser custom track) | 
| Alignm length: | 366 | 
| Alignm identity: | 242 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 101-322 | 
| Cow position: | chr6:49429251-49429472 (view UCSC Genome Browser custom track) | 
| Alignm length: | 223 | 
| Alignm identity: | 148 | 
| Alignm E-value: | 1e-23 | 
| Alignm gaps (pig, cow): | 50, 44 | 
| Conread position: | 101-463 | 
| Cow position: | chr6:49428243-49428605 (view UCSC Genome Browser custom track) | 
| Alignm length: | 364 | 
| Alignm identity: | 253 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 224, 211 | 
| Conread position: | 101-464 | 
| Cow position: | chr6:49428327-49428690 (view UCSC Genome Browser custom track) | 
| Alignm length: | 368 | 
| Alignm identity: | 260 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 48, 42 | 
| Conread position: | 101-493 | 
| Cow position: | chr6:49428495-49428887 (view UCSC Genome Browser custom track) | 
| Alignm length: | 396 | 
| Alignm identity: | 277 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 117, 109 | 
| Conread position: | 107-465 | 
| Cow position: | chr6:49428753-49429111 (view UCSC Genome Browser custom track) | 
| Alignm length: | 359 | 
| Alignm identity: | 249 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 0, 0 | 
| Conread position: | 154-492 | 
| Cow position: | chr6:49428212-49428550 (view UCSC Genome Browser custom track) | 
| Alignm length: | 341 | 
| Alignm identity: | 234 | 
| Alignm E-value: | 0 | 
| Alignm gaps (pig, cow): | 162, 151 | 
Show alignments to all cow chromosomes.
