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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0038g14.5
        

               
Conread position:
               
1-104
               

               
Cow position:
               
chr25:32278316-32278212 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
1-122
               

               
Cow position:
               
chr25:22549901-22549778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
124
               

               
Alignm identity:
               
101
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-131
               

               
Cow position:
               
chr25:4860732-4860601 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
102
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-139
               

               
Cow position:
               
chr25:3969109-3969251 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
144
               

               
Alignm identity:
               
112
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 105
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr25:6421338-6421190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
58, 100
               

               
Conread position:
               
1-160
               

               
Cow position:
               
chr25:33687185-33687020 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
131
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
28, 161
               

               
Conread position:
               
1-162
               

               
Cow position:
               
chr25:17119472-17119314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
56, 123
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr25:11051096-11051256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr25:4488445-4488610 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 93
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr25:4049747-4049914 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr25:33025367-33025201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
170
               

               
Alignm identity:
               
119
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
18, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr25:35585807-35585637 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
56, 70
               

               
Conread position:
               
1-175
               

               
Cow position:
               
chr25:17994579-17994400 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
55, 76
               

               
Conread position:
               
1-179
               

               
Cow position:
               
chr25:36871572-36871753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
184
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 157
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr25:9625520-9625707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
142
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
55, 120
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr25:15368389-15368579 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
39, 146
               

               
Conread position:
               
1-187
               

               
Cow position:
               
chr25:21961293-21961104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
53, 90
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr25:6775087-6774888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
136
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-202
               

               
Cow position:
               
chr25:10011006-10010803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
123, 28
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr25:18323640-18323431 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-206
               

               
Cow position:
               
chr25:23945801-23945591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
58, 32
               

               
Conread position:
               
1-208
               

               
Cow position:
               
chr25:5271300-5271514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
153
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
51, 204
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr25:26911043-26910828 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr25:37469491-37469694 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
30, 55
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr25:41385393-41385173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
18, 162
               

               
Conread position:
               
1-217
               

               
Cow position:
               
chr25:37629191-37628969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
12, 68
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr25:2110796-2111008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 110
               

               
Conread position:
               
1-218
               

               
Cow position:
               
chr25:30816538-30816763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
51, 214
               

               
Conread position:
               
1-219
               

               
Cow position:
               
chr25:18490785-18491007 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-222
               

               
Cow position:
               
chr25:448632-448409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr25:18885767-18885544 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
53, 83
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr25:18448554-18448778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr25:18968985-18969216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
70, 196
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr25:17659941-17660179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
36, 195
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr25:25948682-25948456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 110
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr25:40658017-40658245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
53, 30
               

               
Conread position:
               
1-235
               

               
Cow position:
               
chr25:17354092-17354327 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
23, 127
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr25:9396168-9396405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
167, 30
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr25:26111995-26112229 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
169, 32
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr25:1096290-1096532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 187
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr25:12204183-12204432 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 139
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr25:24727073-24726819 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 28
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr25:12359919-12360176 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
30, 40
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr25:2126182-2126434 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
50, 78
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr25:20394920-20395160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
1-262
               

               
Cow position:
               
chr25:33839101-33839353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:4897810-4898075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
56, 256
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:8231169-8230905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
70, 255
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:14274154-14274417 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
123, 214
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:14954312-14954046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
56, 90
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:16039126-16038862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr25:29199043-29199306 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
21, 64
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr25:13333136-13333402 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr25:38972546-38972813 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
52, 89
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:12235043-12234784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:17659270-17659545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 264
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:17682061-17681796 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
55, 207
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:18155309-18155578 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
67, 180
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr25:23738741-23738471 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
1-269
               

               
Cow position:
               
chr25:6424872-6424605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 55
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr25:34501968-34501696 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
59, 125
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr25:34659391-34659118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr25:35567173-35566896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
54, 266
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr25:6606645-6606367 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 140
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr25:7445866-7446141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
1.99993e-41
               

               
Alignm gaps (pig, cow):
               
56, 83
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr25:36765582-36765309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
125, 56
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr25:38439875-38440150 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
34, 219
               

               
Conread position:
               
1-279
               

               
Cow position:
               
chr25:27621795-27622084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
292
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
22, 79
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr25:6740533-6740809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
168, 69
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr25:12750450-12750160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
56, 151
               

               
Conread position:
               
1-285
               

               
Cow position:
               
chr25:15694696-15694980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 121
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr25:8133252-8133558 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
50, 99
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr25:11054641-11054916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
302
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
248, 37
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr25:40388743-40388451 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
21, 60
               

               
Conread position:
               
1-308
               

               
Cow position:
               
chr25:31733023-31732713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 153
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr25:10698867-10699183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr25:29561677-29561983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
55, 139
               

               
Conread position:
               
1-313
               

               
Cow position:
               
chr25:8235527-8235210 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr25:13446207-13445887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
55, 149
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr25:16560877-16560568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
168, 54
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr25:21121298-21121619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
49, 182
               

               
Conread position:
               
1-316
               

               
Cow position:
               
chr25:41356084-41355762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 261
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr25:9023358-9023663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
55, 72
               

               
Conread position:
               
1-318
               

               
Cow position:
               
chr25:15319632-15319951 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 219
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr25:25827174-25827503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 53
               

               
Conread position:
               
1-321
               

               
Cow position:
               
chr25:36779209-36779535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 80
               

               
Conread position:
               
1-322
               

               
Cow position:
               
chr25:12239424-12239112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 28
               

               
Conread position:
               
1-323
               

               
Cow position:
               
chr25:24654456-24654122 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
55, 264
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr25:5341364-5341693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 154
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr25:9957321-9956990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
340
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
18, 121
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr25:6803277-6803608 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
50, 89
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr25:16242256-16241900 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr25:23351109-23351458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
46, 99
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr25:6948341-6947993 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr25:34343185-34342833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
54, 255
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:6464316-6463967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 119
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:13787664-13788018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-38
               

               
Alignm gaps (pig, cow):
               
123, 285
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:20403006-20402645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 24
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:25754282-25753932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 24
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:26682278-26682634 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
56, 237
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:28274730-28274385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
149, 53
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:28863588-28863943 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:33959547-33959188 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:34013041-34012688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
70, 223
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:35446659-35447001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
52, 32
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr25:39386118-39385768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
55, 186
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr25:20069437-20069782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 45
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr25:12817086-12817436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 187
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr25:9847497-9847861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
56, 259
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr25:6226754-6227111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 202
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr25:3145559-3145922 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 79
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr25:6470503-6470130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr25:27868523-27868888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 55
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr25:8576404-8576772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
22, 215
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr25:10748787-10748423 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
55, 21
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr25:20625216-20624858 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
123, 43
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr25:9349544-9349205 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
53, 109
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr25:14117822-14118173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 160
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr25:17598781-17598411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
376
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
55, 242
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr25:11830183-11829836 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
1-392
               

               
Cow position:
               
chr25:2136072-2136455 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
152, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:7641740-7641339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:15273403-15273784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:16866945-16867352 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
302
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 65
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:22241718-22242074 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
55, 37
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:22531000-22531392 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 111
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:23829401-23829019 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 28
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr25:36761819-36762216 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 213
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr25:21024503-21024091 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
55, 117
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr25:25051671-25051265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 148
               

               
Conread position:
               
1-403
               

               
Cow position:
               
chr25:18564208-18564602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
62, 120
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr25:17975654-17975261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
405
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 213
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr25:21895174-21894768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr25:11662102-11661699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 15
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr25:21209233-21208856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
304
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 12
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr25:18721395-18720999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 101
               

               
Conread position:
               
1-409
               

               
Cow position:
               
chr25:27531555-27531151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 142
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr25:21245893-21245481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 265
               

               
Conread position:
               
1-410
               

               
Cow position:
               
chr25:26523692-26524084 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 99
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr25:13569454-13569053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr25:26087228-26087648 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 243
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr25:4522104-4521713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
399, 54
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr25:24572785-24573192 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 120
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr25:26238583-26238988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 232
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr25:30319736-30319326 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 260
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr25:3992503-3992907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
423
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 196
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr25:30852487-30852892 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
237, 75
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr25:41107471-41107883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
421
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 141
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr25:7216541-7216955 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
317
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 209
               

               
Conread position:
               
1-418
               

               
Cow position:
               
chr25:15714594-15715002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 185
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr25:13708730-13709166 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
56, 114
               

               
Conread position:
               
1-436
               

               
Cow position:
               
chr25:21193230-21192789 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
453
               

               
Alignm identity:
               
339
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 300
               

               
Conread position:
               
1-480
               

               
Cow position:
               
chr25:22412766-22412283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
72, 55
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr25:6683348-6682868 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
494
               

               
Alignm identity:
               
355
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 154
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr25:6474387-6473887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
354
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 177
               

               
Conread position:
               
1-494
               

               
Cow position:
               
chr25:10504623-10504146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
500
               

               
Alignm identity:
               
344
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 128
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr25:12176485-12175965 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
525
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
54, 296
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr25:20650979-20651490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
519
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
55, 290
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr25:30279495-30278999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
512
               

               
Alignm identity:
               
367
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
46, 160
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr25:23053269-23053771 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
352
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 155
               

               
Conread position:
               
1-519
               

               
Cow position:
               
chr25:27821123-27821644 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
538
               

               
Alignm identity:
               
353
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
28, 259
               

               
Conread position:
               
1-519
               

               
Cow position:
               
chr25:36392251-36391725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
537
               

               
Alignm identity:
               
341
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
55, 293
               

               
Conread position:
               
1-530
               

               
Cow position:
               
chr25:10407705-10407183 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
546
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 215
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr25:13720826-13720656 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
27, 91
               

               
Conread position:
               
2-172
               

               
Cow position:
               
chr25:12840153-12840321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
126
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 81
               

               
Conread position:
               
2-202
               

               
Cow position:
               
chr25:18935162-18934957 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
2-204
               

               
Cow position:
               
chr25:36119915-36120118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
54, 146
               

               
Conread position:
               
2-251
               

               
Cow position:
               
chr25:25961676-25961925 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
25, 145
               

               
Conread position:
               
2-261
               

               
Cow position:
               
chr25:28327377-28327117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
11, 57
               

               
Conread position:
               
2-276
               

               
Cow position:
               
chr25:8347223-8347500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
283
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 126
               

               
Conread position:
               
2-292
               

               
Cow position:
               
chr25:8482600-8482302 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
6, 262
               

               
Conread position:
               
2-343
               

               
Cow position:
               
chr25:12097557-12097896 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 16
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr25:2498976-2499331 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
49, 173
               

               
Conread position:
               
2-350
               

               
Cow position:
               
chr25:33664182-33663842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
49, 138
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr25:14570086-14570440 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
20, 52
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr25:13325316-13325659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 29
               

               
Conread position:
               
2-366
               

               
Cow position:
               
chr25:40957272-40956906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
190, 93
               

               
Conread position:
               
2-392
               

               
Cow position:
               
chr25:11437088-11436702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
395
               

               
Alignm identity:
               
303
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 147
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr25:18294600-18294208 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 118
               

               
Conread position:
               
2-414
               

               
Cow position:
               
chr25:22314915-22315332 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
424
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 140
               

               
Conread position:
               
3-153
               

               
Cow position:
               
chr25:29336205-29336356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
154
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
16, 123
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr25:36633273-36633103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
23, 0
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr25:41044531-41044700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
3-203
               

               
Cow position:
               
chr25:8397477-8397680 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
52, 177
               

               
Conread position:
               
3-249
               

               
Cow position:
               
chr25:10366037-10365790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 34
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr25:13840403-13840103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
120, 241
               

               
Conread position:
               
3-305
               

               
Cow position:
               
chr25:41384367-41384062 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
52, 110
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr25:7800851-7801172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 199
               

               
Conread position:
               
3-324
               

               
Cow position:
               
chr25:15391613-15391283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
54, 33
               

               
Conread position:
               
3-349
               

               
Cow position:
               
chr25:18181829-18182178 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
53, 63
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr25:5539137-5539486 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 253
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr25:26849333-26848978 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
59, 214
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr25:16064612-16064959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
171, 128
               

               
Conread position:
               
3-354
               

               
Cow position:
               
chr25:41363429-41363083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
226
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
52, 29
               

               
Conread position:
               
3-384
               

               
Cow position:
               
chr25:10156301-10156666 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
9, 127
               

               
Conread position:
               
3-399
               

               
Cow position:
               
chr25:20076208-20076609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
10, 147
               

               
Conread position:
               
3-400
               

               
Cow position:
               
chr25:8120492-8120893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
121, 234
               

               
Conread position:
               
3-418
               

               
Cow position:
               
chr25:16922077-16921663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 38
               

               
Conread position:
               
3-437
               

               
Cow position:
               
chr25:21950841-21951280 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
445
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 209
               

               
Conread position:
               
4-321
               

               
Cow position:
               
chr25:12208206-12208529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
10, 258
               

               
Conread position:
               
4-321
               

               
Cow position:
               
chr25:16977518-16977837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
5-175
               

               
Cow position:
               
chr25:17426974-17427151 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
178
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-209
               

               
Cow position:
               
chr25:23334728-23334940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
213
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-220
               

               
Cow position:
               
chr25:18044784-18044564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
5-222
               

               
Cow position:
               
chr25:7069242-7069465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr25:7717661-7717888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
9, 106
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr25:12753201-12752972 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr25:7609034-7609272 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr25:15412742-15412980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr25:10637790-10637536 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr25:9931790-9932047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr25:18073268-18073530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr25:26618169-26618426 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr25:2510992-2510730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr25:17808061-17807799 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-262
               

               
Cow position:
               
chr25:34618388-34618124 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-263
               

               
Cow position:
               
chr25:19912825-19912561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr25:17037172-17037437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:3927758-3928025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
13, 257
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:5536932-5536665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:7762963-7763228 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:8656011-8656276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
3e-22
               

               
Alignm gaps (pig, cow):
               
9, 212
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:9414844-9415111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:11269482-11269220 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:12943309-12943042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:13315878-13315611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:13966948-13966681 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr25:26407916-26408179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
266
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
1e-25
               

               
Alignm gaps (pig, cow):
               
46, 65
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr25:26756189-26756457 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
9, 266
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr25:13067266-13066990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
9, 252
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr25:25873271-25872995 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr25:32609698-32609422 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-291
               

               
Cow position:
               
chr25:34121372-34121080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
294
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-292
               

               
Cow position:
               
chr25:23601222-23600929 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:10896011-10895710 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:14352014-14352315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:19586618-19586317 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:22198303-22198604 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:26319462-26319763 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:27076779-27077080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:27146153-27146459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 261
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:29383611-29383311 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-27
               

               
Alignm gaps (pig, cow):
               
9, 259
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:29525146-29524845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
11, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:35589791-35590092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:35602148-35602449 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:35649554-35649855 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr25:38910252-38910553 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:3689131-3689437 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:12157599-12157905 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:15618417-15618723 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:19138851-19138545 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:19531101-19531407 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:28273031-28273337 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr25:33989948-33989642 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr25:34257704-34258016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr25:13062573-13062887 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr25:14555389-14555703 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr25:17418899-17419213 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
9, 253
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr25:29352208-29351894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 57
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:11097424-11097741 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:12318123-12317807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
9, 264
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:17538697-17538380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
9, 201
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:18090638-18090956 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:18236657-18236340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:20771617-20771301 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-316
               

               
Cow position:
               
chr25:27143215-27142898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:380265-379944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 255
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:3141022-3141344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
211
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:13955668-13955346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:19339529-19339850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:36127183-36126861 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-321
               

               
Cow position:
               
chr25:36351460-36351782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
324
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-330
               

               
Cow position:
               
chr25:35554399-35554730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-398
               

               
Cow position:
               
chr25:12840995-12840607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 36
               

               
Conread position:
               
5-513
               

               
Cow position:
               
chr25:33589687-33589170 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
529
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
6-131
               

               
Cow position:
               
chr25:23920135-23920008 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
128
               

               
Alignm identity:
               
104
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
46, 0
               

               
Conread position:
               
6-177
               

               
Cow position:
               
chr25:10366968-10366803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-37
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
6-207
               

               
Cow position:
               
chr25:11956545-11956751 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
208
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
120, 50
               

               
Conread position:
               
6-219
               

               
Cow position:
               
chr25:25783356-25783572 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
50, 74
               

               
Conread position:
               
6-247
               

               
Cow position:
               
chr25:14225077-14224843 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
161, 118
               

               
Conread position:
               
6-252
               

               
Cow position:
               
chr25:35076943-35076724 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
6-302
               

               
Cow position:
               
chr25:10330676-10330397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
121, 50
               

               
Conread position:
               
6-324
               

               
Cow position:
               
chr25:30035270-30035586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
323
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
182, 41
               

               
Conread position:
               
6-351
               

               
Cow position:
               
chr25:23407123-23406774 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
6-358
               

               
Cow position:
               
chr25:20348576-20348940 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 230
               

               
Conread position:
               
6-368
               

               
Cow position:
               
chr25:5834535-5834165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
6e-39
               

               
Alignm gaps (pig, cow):
               
45, 204
               

               
Conread position:
               
6-397
               

               
Cow position:
               
chr25:10643591-10643199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 23
               

               
Conread position:
               
6-406
               

               
Cow position:
               
chr25:26225321-26224908 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
163, 108
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr25:20023681-20023265 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 408
               

               
Conread position:
               
6-410
               

               
Cow position:
               
chr25:26654625-26655028 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
413
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
114, 138
               

               
Conread position:
               
6-560
               

               
Cow position:
               
chr25:41097475-41096911 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
582
               

               
Alignm identity:
               
376
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
12, 58
               

               
Conread position:
               
7-243
               

               
Cow position:
               
chr25:41364260-41364029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
47, 116
               

               
Conread position:
               
7-244
               

               
Cow position:
               
chr25:41392944-41392702 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
47, 196
               

               
Conread position:
               
7-266
               

               
Cow position:
               
chr25:16067979-16068242 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
7, 210
               

               
Conread position:
               
7-398
               

               
Cow position:
               
chr25:17658334-17658722 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
293
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
161, 83
               

               
Conread position:
               
8-233
               

               
Cow position:
               
chr25:12195605-12195381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
43, 107
               

               
Conread position:
               
8-311
               

               
Cow position:
               
chr25:35340052-35340354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
220
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 172
               

               
Conread position:
               
9-163
               

               
Cow position:
               
chr25:22346364-22346521 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
159
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
47, 131
               

               
Conread position:
               
9-167
               

               
Cow position:
               
chr25:20434273-20434433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
9e-22
               

               
Alignm gaps (pig, cow):
               
44, 0
               

               
Conread position:
               
9-184
               

               
Cow position:
               
chr25:15005924-15006096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
179
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
48, 110
               

               
Conread position:
               
9-208
               

               
Cow position:
               
chr25:8485814-8485609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
143
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
42, 0
               

               
Conread position:
               
9-252
               

               
Cow position:
               
chr25:20060310-20060063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 62
               

               
Conread position:
               
9-255
               

               
Cow position:
               
chr25:27504464-27504209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 112
               

               
Conread position:
               
9-274
               

               
Cow position:
               
chr25:16231406-16231136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
47, 251
               

               
Conread position:
               
9-298
               

               
Cow position:
               
chr25:16738224-16737926 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
301
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
46, 81
               

               
Conread position:
               
9-305
               

               
Cow position:
               
chr25:5792085-5791782 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
110, 231
               

               
Conread position:
               
9-316
               

               
Cow position:
               
chr25:2414555-2414844 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
237, 25
               

               
Conread position:
               
9-351
               

               
Cow position:
               
chr25:12171183-12171522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
32, 24
               

               
Conread position:
               
9-351
               

               
Cow position:
               
chr25:25510613-25510960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
47, 249
               

               
Conread position:
               
9-397
               

               
Cow position:
               
chr25:38850769-38850383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
44, 57
               

               
Conread position:
               
9-408
               

               
Cow position:
               
chr25:21191208-21191607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
315
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
45, 189
               

               
Conread position:
               
9-412
               

               
Cow position:
               
chr25:14791474-14791880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
305
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
47, 22
               

               
Conread position:
               
9-423
               

               
Cow position:
               
chr25:787990-788390 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 78
               

               
Conread position:
               
9-500
               

               
Cow position:
               
chr25:22297295-22296818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
497
               

               
Alignm identity:
               
337
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 9
               

               
Conread position:
               
9-503
               

               
Cow position:
               
chr25:15433526-15434017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
508
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
62, 12
               

               
Conread position:
               
10-250
               

               
Cow position:
               
chr25:29215663-29215427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
242
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
182, 9
               

               
Conread position:
               
10-298
               

               
Cow position:
               
chr25:23389555-23389267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
117, 49
               

               
Conread position:
               
10-406
               

               
Cow position:
               
chr25:14512838-14513234 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
402
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
214, 115
               

               
Conread position:
               
10-527
               

               
Cow position:
               
chr25:12261172-12260641 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
541
               

               
Alignm identity:
               
362
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 69
               

               
Conread position:
               
11-364
               

               
Cow position:
               
chr25:2046830-2046482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
45, 7
               

               
Conread position:
               
11-404
               

               
Cow position:
               
chr25:12117265-12116882 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 5
               

               
Conread position:
               
12-167
               

               
Cow position:
               
chr25:38569873-38569718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
1e-23
               

               
Alignm gaps (pig, cow):
               
123, 87
               

               
Conread position:
               
12-169
               

               
Cow position:
               
chr25:32899080-32898918 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
117
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
15, 0
               

               
Conread position:
               
12-184
               

               
Cow position:
               
chr25:14104018-14104182 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
42, 65
               

               
Conread position:
               
12-190
               

               
Cow position:
               
chr25:10657294-10657117 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
110, 5
               

               
Conread position:
               
12-230
               

               
Cow position:
               
chr25:35607995-35607779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-33
               

               
Alignm gaps (pig, cow):
               
56, 21
               

               
Conread position:
               
12-252
               

               
Cow position:
               
chr25:27594027-27594263 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
41, 107
               

               
Conread position:
               
12-298
               

               
Cow position:
               
chr25:5514731-5515025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
115, 0
               

               
Conread position:
               
12-312
               

               
Cow position:
               
chr25:23410386-23410693 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
12-358
               

               
Cow position:
               
chr25:18130799-18131139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
44, 21
               

               
Conread position:
               
13-183
               

               
Cow position:
               
chr25:19366684-19366522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
175
               

               
Alignm identity:
               
141
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
114, 43
               

               
Conread position:
               
13-266
               

               
Cow position:
               
chr25:36554730-36554983 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
37, 112
               

               
Conread position:
               
13-310
               

               
Cow position:
               
chr25:9642082-9642381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
120, 5
               

               
Conread position:
               
13-354
               

               
Cow position:
               
chr25:11139374-11139705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
350
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
6e-40
               

               
Alignm gaps (pig, cow):
               
5, 24
               

               
Conread position:
               
13-397
               

               
Cow position:
               
chr25:1837965-1838351 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
43, 58
               

               
Conread position:
               
13-397
               

               
Cow position:
               
chr25:36081600-36081985 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
390
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
116, 20
               

               
Conread position:
               
14-273
               

               
Cow position:
               
chr25:40151125-40151380 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
41, 57
               

               
Conread position:
               
15-261
               

               
Cow position:
               
chr25:26757166-26757411 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
253
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
3e-32
               

               
Alignm gaps (pig, cow):
               
41, 51
               

               
Conread position:
               
15-323
               

               
Cow position:
               
chr25:36535705-36535397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
159, 41
               

               
Conread position:
               
16-219
               

               
Cow position:
               
chr25:24168170-24167969 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
9.94922e-44
               

               
Alignm gaps (pig, cow):
               
111, 47
               

               
Conread position:
               
16-398
               

               
Cow position:
               
chr25:20785853-20785478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
40, 0
               

               
Conread position:
               
17-170
               

               
Cow position:
               
chr25:20458039-20457883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
114
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
75, 0
               

               
Conread position:
               
17-174
               

               
Cow position:
               
chr25:7440582-7440738 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
162
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
13, 132
               

               
Conread position:
               
17-227
               

               
Cow position:
               
chr25:17702234-17702030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
214
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
34, 103
               

               
Conread position:
               
17-228
               

               
Cow position:
               
chr25:6003262-6003050 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
217
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
39, 174
               

               
Conread position:
               
17-238
               

               
Cow position:
               
chr25:17712263-17712488 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
36, 121
               

               
Conread position:
               
17-240
               

               
Cow position:
               
chr25:12756840-12756611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
36, 0
               

               
Conread position:
               
17-251
               

               
Cow position:
               
chr25:18206570-18206338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
37, 31
               

               
Conread position:
               
17-263
               

               
Cow position:
               
chr25:35344765-35345005 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
250
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
13, 157
               

               
Conread position:
               
17-279
               

               
Cow position:
               
chr25:12824286-12824025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
12, 110
               

               
Conread position:
               
17-334
               

               
Cow position:
               
chr25:9754348-9754049 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
12, 42
               

               
Conread position:
               
17-348
               

               
Cow position:
               
chr25:8225836-8226164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
116, 39
               

               
Conread position:
               
17-366
               

               
Cow position:
               
chr25:5407480-5407821 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
254, 12
               

               
Conread position:
               
17-369
               

               
Cow position:
               
chr25:6237852-6238209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
42, 154
               

               
Conread position:
               
17-383
               

               
Cow position:
               
chr25:5756426-5756780 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
245
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
39, 182
               

               
Conread position:
               
17-396
               

               
Cow position:
               
chr25:14196584-14196970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 364
               

               
Conread position:
               
17-400
               

               
Cow position:
               
chr25:26700769-26701139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
279
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
17-476
               

               
Cow position:
               
chr25:33256098-33256533 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
150, 181
               

               
Conread position:
               
17-524
               

               
Cow position:
               
chr25:9990362-9989881 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
515
               

               
Alignm identity:
               
374
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
20, 108
               

               
Conread position:
               
17-531
               

               
Cow position:
               
chr25:23917571-23918088 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
93, 39
               

               
Conread position:
               
18-173
               

               
Cow position:
               
chr25:33112268-33112111 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
118
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
36, 137
               

               
Conread position:
               
18-181
               

               
Cow position:
               
chr25:25866660-25866818 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
28, 39
               

               
Conread position:
               
18-216
               

               
Cow position:
               
chr25:21266736-21266939 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
18-279
               

               
Cow position:
               
chr25:5572068-5571801 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
18-333
               

               
Cow position:
               
chr25:22203960-22203643 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 209
               

               
Conread position:
               
19-153
               

               
Cow position:
               
chr25:8961194-8961329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
136
               

               
Alignm identity:
               
111
               

               
Alignm E-value:
               
7e-31
               

               
Alignm gaps (pig, cow):
               
32, 0
               

               
Conread position:
               
19-168
               

               
Cow position:
               
chr25:433345-433202 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 0
               

               
Conread position:
               
19-216
               

               
Cow position:
               
chr25:24302505-24302310 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
138
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
81, 86
               

               
Conread position:
               
19-251
               

               
Cow position:
               
chr25:16400520-16400298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
15, 88
               

               
Conread position:
               
19-252
               

               
Cow position:
               
chr25:18452855-18453095 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
37, 52
               

               
Conread position:
               
19-268
               

               
Cow position:
               
chr25:10012318-10012066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
38, 129
               

               
Conread position:
               
19-320
               

               
Cow position:
               
chr25:8512360-8512054 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
108, 35
               

               
Conread position:
               
19-327
               

               
Cow position:
               
chr25:33260469-33260772 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
313
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
21, 172
               

               
Conread position:
               
19-342
               

               
Cow position:
               
chr25:5837235-5836902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
253
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
37, 179
               

               
Conread position:
               
19-349
               

               
Cow position:
               
chr25:24406009-24405671 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
341
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 238
               

               
Conread position:
               
19-353
               

               
Cow position:
               
chr25:12081584-12081256 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
35, 68
               

               
Conread position:
               
19-365
               

               
Cow position:
               
chr25:22910113-22909779 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
91, 45
               

               
Conread position:
               
19-366
               

               
Cow position:
               
chr25:11131316-11131663 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
230, 37
               

               
Conread position:
               
19-366
               

               
Cow position:
               
chr25:38135478-38135829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 110
               

               
Conread position:
               
19-384
               

               
Cow position:
               
chr25:14833922-14833564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
315, 46
               

               
Conread position:
               
19-398
               

               
Cow position:
               
chr25:20007871-20008244 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
44, 93
               

               
Conread position:
               
19-414
               

               
Cow position:
               
chr25:33978470-33978097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
32, 89
               

               
Conread position:
               
19-414
               

               
Cow position:
               
chr25:40321561-40321164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
295
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
105, 157
               

               
Conread position:
               
19-478
               

               
Cow position:
               
chr25:18013131-18013593 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
467
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
4e-35
               

               
Alignm gaps (pig, cow):
               
127, 217
               

               
Conread position:
               
20-236
               

               
Cow position:
               
chr25:20460855-20461077 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
224
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 13
               

               
Conread position:
               
20-261
               

               
Cow position:
               
chr25:13376382-13376136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
4e-26
               

               
Alignm gaps (pig, cow):
               
31, 240
               

               
Conread position:
               
20-354
               

               
Cow position:
               
chr25:37594146-37594473 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
339
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
37, 121
               

               
Conread position:
               
20-457
               

               
Cow position:
               
chr25:38981845-38982259 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
438
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
21-126
               

               
Cow position:
               
chr25:36139339-36139445 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
107
               

               
Alignm identity:
               
86
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
35, 0
               

               
Conread position:
               
22-252
               

               
Cow position:
               
chr25:38357838-38358064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
34, 90
               

               
Conread position:
               
22-324
               

               
Cow position:
               
chr25:18474909-18475217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-28
               

               
Alignm gaps (pig, cow):
               
35, 224
               

               
Conread position:
               
22-385
               

               
Cow position:
               
chr25:18487408-18487765 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
29, 50
               

               
Conread position:
               
23-155
               

               
Cow position:
               
chr25:22730377-22730503 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
133
               

               
Alignm identity:
               
106
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
23-181
               

               
Cow position:
               
chr25:36513253-36513405 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
161
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
145, 34
               

               
Conread position:
               
23-252
               

               
Cow position:
               
chr25:16430289-16430075 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
23-264
               

               
Cow position:
               
chr25:9596361-9596607 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
247
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
39, 0
               

               
Conread position:
               
23-299
               

               
Cow position:
               
chr25:35625436-35625172 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
33, 0
               

               
Conread position:
               
23-305
               

               
Cow position:
               
chr25:24103550-24103837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
289
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
28, 237
               

               
Conread position:
               
23-349
               

               
Cow position:
               
chr25:33691289-33691619 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
335
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 194
               

               
Conread position:
               
23-351
               

               
Cow position:
               
chr25:6886242-6885907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 84
               

               
Conread position:
               
23-354
               

               
Cow position:
               
chr25:35612566-35612246 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
9.80909e-45
               

               
Alignm gaps (pig, cow):
               
33, 96
               

               
Conread position:
               
23-355
               

               
Cow position:
               
chr25:18988112-18988458 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 21
               

               
Conread position:
               
23-365
               

               
Cow position:
               
chr25:18000779-18000453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
221, 27
               

               
Conread position:
               
23-398
               

               
Cow position:
               
chr25:28188213-28187834 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
381
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 257
               

               
Conread position:
               
23-486
               

               
Cow position:
               
chr25:11585253-11585709 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
472
               

               
Alignm identity:
               
346
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
32, 157
               

               
Conread position:
               
24-193
               

               
Cow position:
               
chr25:9842736-9842910 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
149
               

               
Alignm E-value:
               
2.94273e-44
               

               
Alignm gaps (pig, cow):
               
27, 68
               

               
Conread position:
               
24-261
               

               
Cow position:
               
chr25:37687424-37687203 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
30, 43
               

               
Conread position:
               
24-351
               

               
Cow position:
               
chr25:18075405-18075728 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
337
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 47
               

               
Conread position:
               
24-351
               

               
Cow position:
               
chr25:26282760-26283086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
333
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
103, 218
               

               
Conread position:
               
25-162
               

               
Cow position:
               
chr25:16691253-16691395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
143
               

               
Alignm identity:
               
113
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
31, 0
               

               
Conread position:
               
25-205
               

               
Cow position:
               
chr25:40407732-40407552 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
6e-29
               

               
Alignm gaps (pig, cow):
               
143, 33
               

               
Conread position:
               
25-228
               

               
Cow position:
               
chr25:32063581-32063790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
210
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
8e-32
               

               
Alignm gaps (pig, cow):
               
100, 0
               

               
Conread position:
               
25-244
               

               
Cow position:
               
chr25:41351468-41351248 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
29, 151
               

               
Conread position:
               
25-305
               

               
Cow position:
               
chr25:15470331-15470046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-26
               

               
Alignm gaps (pig, cow):
               
26, 235
               

               
Conread position:
               
25-365
               

               
Cow position:
               
chr25:24452431-24452082 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
69, 45
               

               
Conread position:
               
25-384
               

               
Cow position:
               
chr25:36037043-36036682 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 198
               

               
Conread position:
               
25-414
               

               
Cow position:
               
chr25:7306035-7306418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
396
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 225
               

               
Conread position:
               
26-120
               

               
Cow position:
               
chr25:21892844-21892938 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
95
               

               
Alignm identity:
               
81
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
0, 0
               

               
Conread position:
               
26-262
               

               
Cow position:
               
chr25:13642578-13642335 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
244
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 0
               

               
Conread position:
               
26-318
               

               
Cow position:
               
chr25:35332911-35333189 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
65, 30
               

               
Conread position:
               
26-341
               

               
Cow position:
               
chr25:2517284-2517576 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
132, 0
               

               
Conread position:
               
26-352
               

               
Cow position:
               
chr25:32191409-32191725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
31, 50
               

               
Conread position:
               
26-414
               

               
Cow position:
               
chr25:33550244-33550639 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
25, 35
               

               
Conread position:
               
27-151
               

               
Cow position:
               
chr25:14809049-14809179 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
132
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
28, 78
               

               
Conread position:
               
27-159
               

               
Cow position:
               
chr25:12174766-12174629 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
115
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
30, 0
               

               
Conread position:
               
27-172
               

               
Cow position:
               
chr25:13566584-13566732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
150
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-31
               

               
Alignm gaps (pig, cow):
               
100, 28
               

               
Conread position:
               
27-275
               

               
Cow position:
               
chr25:9743961-9744217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-30
               

               
Alignm gaps (pig, cow):
               
19, 219
               

               
Conread position:
               
27-298
               

               
Cow position:
               
chr25:9961439-9961162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 236
               

               
Conread position:
               
27-299
               

               
Cow position:
               
chr25:26058324-26058597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
30, 189
               

               
Conread position:
               
27-318
               

               
Cow position:
               
chr25:6891781-6891504 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
295
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
29, 94
               

               
Conread position:
               
27-349
               

               
Cow position:
               
chr25:8675586-8675912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
30, 217
               

               
Conread position:
               
27-392
               

               
Cow position:
               
chr25:12778795-12778436 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 175
               

               
Conread position:
               
27-397
               

               
Cow position:
               
chr25:19679081-19679464 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
387
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 165
               

               
Conread position:
               
27-398
               

               
Cow position:
               
chr25:38957717-38958066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 32
               

               
Conread position:
               
27-415
               

               
Cow position:
               
chr25:17566326-17566719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 103
               

               
Conread position:
               
28-275
               

               
Cow position:
               
chr25:13099740-13099489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
1e-35
               

               
Alignm gaps (pig, cow):
               
29, 113
               

               
Conread position:
               
28-415
               

               
Cow position:
               
chr25:31230483-31230118 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
274
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
26, 51
               

               
Conread position:
               
29-248
               

               
Cow position:
               
chr25:36026748-36026970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
223
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 0
               

               
Conread position:
               
29-252
               

               
Cow position:
               
chr25:19633876-19633659 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
97, 49
               

               
Conread position:
               
29-264
               

               
Cow position:
               
chr25:24136694-24136463 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-37
               

               
Alignm gaps (pig, cow):
               
27, 35
               

               
Conread position:
               
29-292
               

               
Cow position:
               
chr25:8918537-8918271 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
28, 176
               

               
Conread position:
               
29-300
               

               
Cow position:
               
chr25:5755573-5755297 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
22, 161
               

               
Conread position:
               
29-354
               

               
Cow position:
               
chr25:35347646-35347970 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
94, 234
               

               
Conread position:
               
30-254
               

               
Cow position:
               
chr25:23739517-23739298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
26, 38
               

               
Conread position:
               
30-290
               

               
Cow position:
               
chr25:16001779-16001522 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
263
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
26, 107
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr25:4547978-4547621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
262
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 202
               

               
Conread position:
               
30-384
               

               
Cow position:
               
chr25:9055938-9056275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
11, 27
               

               
Conread position:
               
30-412
               

               
Cow position:
               
chr25:9269115-9269468 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
25, 0
               

               
Conread position:
               
30-414
               

               
Cow position:
               
chr25:5847064-5846683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
389
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
96, 146
               

               
Conread position:
               
30-468
               

               
Cow position:
               
chr25:7581685-7581253 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
447
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
97, 234
               

               
Conread position:
               
30-509
               

               
Cow position:
               
chr25:10949810-10949362 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
331
               

               
Alignm E-value:
               
8.99634e-43
               

               
Alignm gaps (pig, cow):
               
355, 29
               

               
Conread position:
               
30-519
               

               
Cow position:
               
chr25:13121915-13122420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
509
               

               
Alignm identity:
               
308
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
22, 207
               

               
Conread position:
               
31-501
               

               
Cow position:
               
chr25:35826533-35826066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
485
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
14, 157
               

               
Conread position:
               
32-322
               

               
Cow position:
               
chr25:1735573-1735285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 146
               

               
Conread position:
               
33-197
               

               
Cow position:
               
chr25:28920636-28920803 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
14, 86
               

               
Conread position:
               
33-229
               

               
Cow position:
               
chr25:41354561-41354366 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
199
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
22, 144
               

               
Conread position:
               
33-243
               

               
Cow position:
               
chr25:10137843-10138047 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 140
               

               
Conread position:
               
33-285
               

               
Cow position:
               
chr25:15412025-15411770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
259
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
24, 227
               

               
Conread position:
               
33-338
               

               
Cow position:
               
chr25:11666401-11666699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7.00005e-41
               

               
Alignm gaps (pig, cow):
               
18, 86
               

               
Conread position:
               
33-354
               

               
Cow position:
               
chr25:18161048-18161353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
2e-30
               

               
Alignm gaps (pig, cow):
               
211, 22
               

               
Conread position:
               
33-398
               

               
Cow position:
               
chr25:15254586-15254237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 155
               

               
Conread position:
               
34-347
               

               
Cow position:
               
chr25:2194693-2194991 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
89, 22
               

               
Conread position:
               
34-351
               

               
Cow position:
               
chr25:13960808-13961130 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
325
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
9e-33
               

               
Alignm gaps (pig, cow):
               
28, 253
               

               
Conread position:
               
35-200
               

               
Cow position:
               
chr25:22971221-22971389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
169
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
24, 0
               

               
Conread position:
               
35-250
               

               
Cow position:
               
chr25:395102-395315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
20, 56
               

               
Conread position:
               
35-292
               

               
Cow position:
               
chr25:4002543-4002807 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
21, 0
               

               
Conread position:
               
35-365
               

               
Cow position:
               
chr25:14467335-14467016 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
338
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
3e-34
               

               
Alignm gaps (pig, cow):
               
92, 19
               

               
Conread position:
               
35-412
               

               
Cow position:
               
chr25:16319385-16319017 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
384
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
29, 152
               

               
Conread position:
               
36-515
               

               
Cow position:
               
chr25:20020239-20019768 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
491
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
16, 96
               

               
Conread position:
               
38-320
               

               
Cow position:
               
chr25:22575768-22575491 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
63, 21
               

               
Conread position:
               
38-322
               

               
Cow position:
               
chr25:14266752-14266483 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
290
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
100, 17
               

               
Conread position:
               
38-410
               

               
Cow position:
               
chr25:33457456-33457853 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
277
               

               
Alignm E-value:
               
4.2039e-45
               

               
Alignm gaps (pig, cow):
               
20, 389
               

               
Conread position:
               
38-414
               

               
Cow position:
               
chr25:24669680-24669324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
107, 0
               

               
Conread position:
               
38-415
               

               
Cow position:
               
chr25:36746695-36746321 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
383
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
86, 163
               

               
Conread position:
               
39-170
               

               
Cow position:
               
chr25:32176470-32176333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
138
               

               
Alignm identity:
               
108
               

               
Alignm E-value:
               
3e-23
               

               
Alignm gaps (pig, cow):
               
14, 0
               

               
Conread position:
               
39-192
               

               
Cow position:
               
chr25:36557442-36557595 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
84, 17
               

               
Conread position:
               
39-200
               

               
Cow position:
               
chr25:31586791-31586953 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
17, 109
               

               
Conread position:
               
39-274
               

               
Cow position:
               
chr25:20085038-20085269 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8.00001e-42
               

               
Alignm gaps (pig, cow):
               
18, 109
               

               
Conread position:
               
39-281
               

               
Cow position:
               
chr25:13302951-13303196 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
12, 222
               

               
Conread position:
               
39-305
               

               
Cow position:
               
chr25:34502923-34502652 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
1e-22
               

               
Alignm gaps (pig, cow):
               
12, 221
               

               
Conread position:
               
39-308
               

               
Cow position:
               
chr25:20211335-20211059 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 145
               

               
Conread position:
               
39-313
               

               
Cow position:
               
chr25:12054799-12054520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
8e-21
               

               
Alignm gaps (pig, cow):
               
12, 221
               

               
Conread position:
               
39-351
               

               
Cow position:
               
chr25:21458339-21458657 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
320
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
5e-28
               

               
Alignm gaps (pig, cow):
               
17, 227
               

               
Conread position:
               
39-360
               

               
Cow position:
               
chr25:12294000-12293674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
332
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 158
               

               
Conread position:
               
39-364
               

               
Cow position:
               
chr25:19129604-19129932 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
11, 33
               

               
Conread position:
               
40-227
               

               
Cow position:
               
chr25:10205128-10204937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
192
               

               
Alignm identity:
               
132
               

               
Alignm E-value:
               
3e-21
               

               
Alignm gaps (pig, cow):
               
16, 0
               

               
Conread position:
               
40-247
               

               
Cow position:
               
chr25:22735875-22736076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
212
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
4e-24
               

               
Alignm gaps (pig, cow):
               
18, 69
               

               
Conread position:
               
40-396
               

               
Cow position:
               
chr25:37448189-37448538 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
3e-33
               

               
Alignm gaps (pig, cow):
               
14, 70
               

               
Conread position:
               
41-255
               

               
Cow position:
               
chr25:41366415-41366201 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-27
               

               
Alignm gaps (pig, cow):
               
99, 176
               

               
Conread position:
               
41-259
               

               
Cow position:
               
chr25:6815004-6815217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
222
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
1e-36
               

               
Alignm gaps (pig, cow):
               
205, 15
               

               
Conread position:
               
41-351
               

               
Cow position:
               
chr25:41122147-41122459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
16, 99
               

               
Conread position:
               
41-399
               

               
Cow position:
               
chr25:18265917-18266276 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
208, 65
               

               
Conread position:
               
42-225
               

               
Cow position:
               
chr25:24008423-24008236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
188
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
2e-39
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
42-229
               

               
Cow position:
               
chr25:19576686-19576502 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
5e-38
               

               
Alignm gaps (pig, cow):
               
13, 116
               

               
Conread position:
               
42-311
               

               
Cow position:
               
chr25:18293511-18293778 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
277
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
4e-36
               

               
Alignm gaps (pig, cow):
               
148, 76
               

               
Conread position:
               
44-166
               

               
Cow position:
               
chr25:17475768-17475638 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
131
               

               
Alignm identity:
               
107
               

               
Alignm E-value:
               
4e-25
               

               
Alignm gaps (pig, cow):
               
7, 0
               

               
Conread position:
               
44-247
               

               
Cow position:
               
chr25:23324608-23324399 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
1e-34
               

               
Alignm gaps (pig, cow):
               
26, 20
               

               
Conread position:
               
45-422
               

               
Cow position:
               
chr25:21541304-21541688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
391
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
2e-29
               

               
Alignm gaps (pig, cow):
               
12, 202
               

               
Conread position:
               
46-368
               

               
Cow position:
               
chr25:41132597-41132278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
3.00018e-42
               

               
Alignm gaps (pig, cow):
               
11, 79
               

               
Conread position:
               
47-245
               

               
Cow position:
               
chr25:18237514-18237716 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
205
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
1e-24
               

               
Alignm gaps (pig, cow):
               
10, 138
               

               
Conread position:
               
48-402
               

               
Cow position:
               
chr25:26338206-26338573 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
79, 210
               

               
Conread position:
               
48-503
               

               
Cow position:
               
chr25:19478452-19478888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
461
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
2.99878e-43
               

               
Alignm gaps (pig, cow):
               
199, 21
               

               
Conread position:
               
49-351
               

               
Cow position:
               
chr25:13380854-13380537 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
75, 0
               
UCSC Genome Browser

               
Conread position:
               
49-414
               

               
Cow position:
               
chr25:21289102-21289470 (view  custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
77, 201
               
UCSC Genome Browser

               
               
               
Conread position:
50-227

               
               
               
Cow position:
chr25:10746663-10746838 (view  custom track)

               
               
               
Alignm length:
178

               
               
               
Alignm identity:
142

               
               
               
Alignm E-value:
2e-39

               
               
               
Alignm gaps (pig, cow):
137, 0
UCSC Genome Browser

               
               
               
Conread position:
50-291

               
               
               
Cow position:
chr25:7329307-7329553 (view  custom track)

               
               
               
Alignm length:
248

               
               
               
Alignm identity:
197

               
               
               
Alignm E-value:
0

               
               
               
Alignm gaps (pig, cow):
71, 164

               
               
               Conread position:50-322
               
               
               Cow position:chr25:8560632-8560904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):145, 38

               
               
               Conread position:50-354
               
               
               Cow position:chr25:38425128-38425428 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:50-366
               
               
               Cow position:chr25:15377096-15377405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):193, 66

               
               
               Conread position:50-414
               
               
               Cow position:chr25:1762870-1763212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):118, 69

               
               
               Conread position:51-418
               
               
               Cow position:chr25:61421-61779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):120, 165

               
               
               Conread position:52-211
               
               
               Cow position:chr25:16316662-16316818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:127
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:52-259
               
               
               Cow position:chr25:15286775-15286569 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):80, 90

               
               
               Conread position:52-261
               
               
               Cow position:chr25:41387752-41387546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):194, 136

               
               
               Conread position:53-249
               
               
               Cow position:chr25:6256172-6255974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:201
               
               
               Alignm identity:165
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 41

               
               
               Conread position:55-364
               
               
               Cow position:chr25:29826178-29826488 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):20, 205

               
               
               Conread position:57-305
               
               
               Cow position:chr25:36033206-36033456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:199
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):70, 90

               
               
               Conread position:57-327
               
               
               Cow position:chr25:17365487-17365218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):135, 48

               
               
               Conread position:57-351
               
               
               Cow position:chr25:10218281-10217985 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 212

               
               
               Conread position:57-399
               
               
               Cow position:chr25:6961380-6961041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):185, 45

               
               
               Conread position:59-176
               
               
               Cow position:chr25:35902011-35902131 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-28
               
               
               Alignm gaps (pig, cow):68, 48

               
               
               Conread position:59-538
               
               
               Cow position:chr25:34169726-34170207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:348
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):201, 136

               
               
               Conread position:66-351
               
               
               Cow position:chr25:17914559-17914844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):105, 203

               
               
               Conread position:67-397
               
               
               Cow position:chr25:12319558-12319243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):182, 50

               
               
               Conread position:67-500
               
               
               Cow position:chr25:7007696-7008115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):189, 47

               
               
               Conread position:69-374
               
               
               Cow position:chr25:30462508-30462221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:69-391
               
               
               Cow position:chr25:26090030-26089709 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):174, 13

               
               
               Conread position:70-268
               
               
               Cow position:chr25:11978916-11978722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-40
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:70-282
               
               
               Cow position:chr25:12899538-12899754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:178
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 12

               
               
               Conread position:71-229
               
               
               Cow position:chr25:2595962-2596128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:131
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:71-364
               
               
               Cow position:chr25:14255703-14255984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):103, 54

               
               
               Conread position:71-415
               
               
               Cow position:chr25:2624588-2624921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 154

               
               
               Conread position:72-208
               
               
               Cow position:chr25:16389507-16389369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:73-353
               
               
               Cow position:chr25:34768934-34768666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:203
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):36, 42

               
               
               Conread position:73-384
               
               
               Cow position:chr25:14720539-14720841 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 21

               
               
               Conread position:76-185
               
               
               Cow position:chr25:33556756-33556865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:92
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:78-247
               
               
               Cow position:chr25:13736520-13736353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):55, 123

               
               
               Conread position:79-314
               
               
               Cow position:chr25:26270142-26269910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.80909e-45
               
               
               Alignm gaps (pig, cow):95, 119

               
               
               Conread position:80-364
               
               
               Cow position:chr25:23912233-23912537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:80-414
               
               
               Cow position:chr25:40905036-40904705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:4e-36
               
               
               Alignm gaps (pig, cow):86, 156

               
               
               Conread position:81-384
               
               
               Cow position:chr25:16714480-16714173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:226
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):93, 59

               
               
               Conread position:81-406
               
               
               Cow position:chr25:13272363-13272687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 106

               
               
               Conread position:81-410
               
               
               Cow position:chr25:22178715-22179037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 0

               
               
               Conread position:82-365
               
               
               Cow position:chr25:8157715-8157430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):41, 75

               
               
               Conread position:83-256
               
               
               Cow position:chr25:13294702-13294867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):82, 31

               
               
               Conread position:83-275
               
               
               Cow position:chr25:13305174-13305375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:144
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-275
               
               
               Cow position:chr25:30074416-30074216 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):44, 132

               
               
               Conread position:83-317
               
               
               Cow position:chr25:11894097-11893864 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):86, 21

               
               
               Conread position:83-351
               
               
               Cow position:chr25:10331826-10331558 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:183
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):86, 170

               
               
               Conread position:83-412
               
               
               Cow position:chr25:17704545-17704867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:237
               
               
               Alignm E-value:8.99634e-43
               
               
               Alignm gaps (pig, cow):44, 138

               
               
               Conread position:84-326
               
               
               Cow position:chr25:21047123-21047366 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-29
               
               
               Alignm gaps (pig, cow):85, 43

               
               
               Conread position:86-205
               
               
               Cow position:chr25:22340837-22340956 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):35, 40

               
               
               Conread position:86-352
               
               
               Cow position:chr25:27801089-27801343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):23, 63

               
               
               Conread position:88-290
               
               
               Cow position:chr25:12521160-12520961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):59, 93

               
               
               Conread position:88-354
               
               
               Cow position:chr25:26259694-26259421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):39, 160

               
               
               Conread position:89-365
               
               
               Cow position:chr25:15410109-15409837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:194
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):80, 46

               
               
               Conread position:92-308
               
               
               Cow position:chr25:21042192-21042407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:157
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):159, 29

               
               
               Conread position:92-371
               
               
               Cow position:chr25:12755686-12755396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):82, 22

               
               
               Conread position:92-398
               
               
               Cow position:chr25:20133510-20133204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 166

               
               
               Conread position:92-401
               
               
               Cow position:chr25:26137014-26136708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):58, 24

               
               
               Conread position:92-407
               
               
               Cow position:chr25:25861555-25861231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:94-249
               
               
               Cow position:chr25:35110323-35110163 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:131
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-250
               
               
               Cow position:chr25:17186198-17186359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:116
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-262
               
               
               Cow position:chr25:3982851-3983018 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:94-336
               
               
               Cow position:chr25:13672195-13672444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:94-384
               
               
               Cow position:chr25:32453591-32453324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:218
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:95-285
               
               
               Cow position:chr25:33267532-33267724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:149
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):73, 19

               
               
               Conread position:95-351
               
               
               Cow position:chr25:26133846-26134107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:95-351
               
               
               Cow position:chr25:29136352-29136096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):32, 113

               
               
               Conread position:95-399
               
               
               Cow position:chr25:22751205-22750895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:213
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:95-457
               
               
               Cow position:chr25:17342257-17342635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):32, 176

               
               
               Conread position:98-398
               
               
               Cow position:chr25:11315722-11316012 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:209
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):72, 16

               
               
               Conread position:98-526
               
               
               Cow position:chr25:18905692-18906140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:451
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 166

               
               
               Conread position:100-249
               
               
               Cow position:chr25:23323015-23323167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):21, 42

               
               
               Conread position:100-261
               
               
               Cow position:chr25:14931950-14931786 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):77, 72

               
               
               Conread position:101-382
               
               
               Cow position:chr25:11325328-11325042 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:182
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:102-366
               
               
               Cow position:chr25:4681048-4681309 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 96

               
               
               Conread position:102-366
               
               
               Cow position:chr25:32606511-32606248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:180
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):25, 173

               
               
               Conread position:102-404
               
               
               Cow position:chr25:36017354-36017648 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-35
               
               
               Alignm gaps (pig, cow):147, 31

               
               
               Conread position:102-503
               
               
               Cow position:chr25:18894908-18894513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 212

               
               
               Conread position:103-351
               
               
               Cow position:chr25:17991768-17991523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):13, 106

               
               
               Conread position:104-208
               
               
               Cow position:chr25:15566233-15566129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:106
               
               
               Alignm identity:88
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):64, 92

               
               
               Conread position:104-406
               
               
               Cow position:chr25:17190927-17190630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:221
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 36

               
               
               Conread position:105-272
               
               
               Cow position:chr25:8596468-8596636 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):68, 11

               
               
               Conread position:105-410
               
               
               Cow position:chr25:32277781-32277486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:223
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):66, 154

               
               
               Conread position:107-202
               
               
               Cow position:chr25:4937348-4937252 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:97
               
               
               Alignm identity:81
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:107-342
               
               
               Cow position:chr25:27532852-27532616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):67, 7

               
               
               Conread position:107-398
               
               
               Cow position:chr25:7750275-7750563 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 7

               
               
               Conread position:108-217
               
               
               Cow position:chr25:26938409-26938299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:112
               
               
               Alignm identity:93
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):8, 91

               
               
               Conread position:108-354
               
               
               Cow position:chr25:24651631-24651382 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):24, 148

               
               
               Conread position:109-259
               
               
               Cow position:chr25:23571074-23570932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):59, 5

               
               
               Conread position:109-274
               
               
               Cow position:chr25:13472067-13471909 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:124
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:109-393
               
               
               Cow position:chr25:20047329-20047613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:198
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):64, 5

               
               
               Conread position:110-306
               
               
               Cow position:chr25:6943295-6943091 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:145
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):57, 158

               
               
               Conread position:110-319
               
               
               Cow position:chr25:11318833-11319034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:149
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):57, 129

               
               
               Conread position:110-365
               
               
               Cow position:chr25:26457861-26457600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):34, 30

               
               
               Conread position:110-488
               
               
               Cow position:chr25:25026622-25026247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:243
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):59, 6

               
               
               Conread position:111-308
               
               
               Cow position:chr25:31704817-31705024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:111-412
               
               
               Cow position:chr25:23245185-23244876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:113-350
               
               
               Cow position:chr25:37562537-37562761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 78

               
               
               Conread position:113-421
               
               
               Cow position:chr25:15440954-15440646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):59, 142

               
               
               Conread position:114-252
               
               
               Cow position:chr25:11542741-11542879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:107
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:114-322
               
               
               Cow position:chr25:16555589-16555801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:156
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):68, 58

               
               
               Conread position:114-398
               
               
               Cow position:chr25:21893163-21893449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):8, 45

               
               
               Conread position:114-488
               
               
               Cow position:chr25:17144254-17144635 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:264
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):135, 25

               
               
               Conread position:117-298
               
               
               Cow position:chr25:36124508-36124696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:118-398
               
               
               Cow position:chr25:34979034-34978752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:200
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):25, 7

               
               
               Conread position:118-414
               
               
               Cow position:chr25:13443573-13443285 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:214
               
               
               Alignm E-value:1e-36
               
               
               Alignm gaps (pig, cow):125, 29

               
               
               Conread position:119-351
               
               
               Cow position:chr25:17177617-17177861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):49, 94

               
               
               Conread position:120-255
               
               
               Cow position:chr25:30065047-30064920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):85, 0

               
               
               Conread position:120-302
               
               
               Cow position:chr25:6121934-6121754 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):59, 150

               
               
               Conread position:120-336
               
               
               Cow position:chr25:8485663-8485442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:121-423
               
               
               Cow position:chr25:26679062-26679360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:121-517
               
               
               Cow position:chr25:448333-447946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:276
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):48, 131

               
               
               Conread position:122-286
               
               
               Cow position:chr25:5271580-5271743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):46, 139

               
               
               Conread position:122-419
               
               
               Cow position:chr25:5920773-5921082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:220
               
               
               Alignm E-value:3.00018e-42
               
               
               Alignm gaps (pig, cow):51, 258

               
               
               Conread position:123-252
               
               
               Cow position:chr25:23355752-23355885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:123-366
               
               
               Cow position:chr25:19317098-19317344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-32
               
               
               Alignm gaps (pig, cow):52, 13

               
               
               Conread position:123-414
               
               
               Cow position:chr25:38569626-38569352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:123-415
               
               
               Cow position:chr25:41151124-41150837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:208
               
               
               Alignm E-value:2.99878e-43
               
               
               Alignm gaps (pig, cow):248, 84

               
               
               Conread position:124-351
               
               
               Cow position:chr25:6996619-6996848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:172
               
               
               Alignm E-value:5e-37
               
               
               Alignm gaps (pig, cow):49, 137

               
               
               Conread position:125-351
               
               
               Cow position:chr25:9002513-9002736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):49, 115

               
               
               Conread position:128-397
               
               
               Cow position:chr25:7380999-7380729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):29, 86

               
               
               Conread position:129-237
               
               
               Cow position:chr25:31055275-31055169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:109
               
               
               Alignm identity:89
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:129-278
               
               
               Cow position:chr25:20789655-20789508 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:115
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):39, 11

               
               
               Conread position:129-399
               
               
               Cow position:chr25:31732492-31732209 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-37
               
               
               Alignm gaps (pig, cow):115, 20

               
               
               Conread position:130-298
               
               
               Cow position:chr25:32588036-32587867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:123
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:130-414
               
               
               Cow position:chr25:5474383-5474105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:199
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):38, 108

               
               
               Conread position:131-398
               
               
               Cow position:chr25:36020251-36020521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):38, 14

               
               
               Conread position:132-414
               
               
               Cow position:chr25:36835579-36835304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):43, 66

               
               
               Conread position:133-358
               
               
               Cow position:chr25:36501392-36501170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:155
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):52, 120

               
               
               Conread position:133-364
               
               
               Cow position:chr25:20216679-20216911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 113

               
               
               Conread position:133-403
               
               
               Cow position:chr25:8961620-8961885 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:199
               
               
               Alignm E-value:7.00005e-41
               
               
               Alignm gaps (pig, cow):107, 79

               
               
               Conread position:135-468
               
               
               Cow position:chr25:30618914-30619238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):242, 37

               
               
               Conread position:136-344
               
               
               Cow position:chr25:24843961-24844177 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:156
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):74, 168

               
               
               Conread position:137-418
               
               
               Cow position:chr25:21668096-21668378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 260

               
               
               Conread position:139-365
               
               
               Cow position:chr25:6687802-6688023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-31
               
               
               Alignm gaps (pig, cow):35, 25

               
               
               Conread position:140-262
               
               
               Cow position:chr25:22332615-22332740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:126
               
               
               Alignm identity:101
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:140-391
               
               
               Cow position:chr25:12609198-12609444 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:191
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):117, 72

               
               
               Conread position:140-398
               
               
               Cow position:chr25:7673133-7673412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:197
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):59, 135

               
               
               Conread position:140-398
               
               
               Cow position:chr25:34379250-34378994 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):131, 13

               
               
               Conread position:140-476
               
               
               Cow position:chr25:21031388-21031051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:212
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):29, 115

               
               
               Conread position:141-410
               
               
               Cow position:chr25:24207564-24207290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):106, 35

               
               
               Conread position:142-363
               
               
               Cow position:chr25:11066293-11066067 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:144-279
               
               
               Cow position:chr25:10135288-10135426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:104
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:144-322
               
               
               Cow position:chr25:12997449-12997628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):24, 165

               
               
               Conread position:145-422
               
               
               Cow position:chr25:22730691-22730961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-33
               
               
               Alignm gaps (pig, cow):23, 54

               
               
               Conread position:146-349
               
               
               Cow position:chr25:15613141-15612939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:142
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):23, 93

               
               
               Conread position:146-349
               
               
               Cow position:chr25:16570474-16570664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:160
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):138, 24

               
               
               Conread position:147-360
               
               
               Cow position:chr25:7011113-7010899 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):26, 94

               
               
               Conread position:147-415
               
               
               Cow position:chr25:20523370-20523109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):72, 45

               
               
               Conread position:148-351
               
               
               Cow position:chr25:20664436-20664218 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:148-355
               
               
               Cow position:chr25:24051824-24052034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:173
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 77

               
               
               Conread position:152-359
               
               
               Cow position:chr25:22756474-22756681 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-33
               
               
               Alignm gaps (pig, cow):17, 108

               
               
               Conread position:152-372
               
               
               Cow position:chr25:15634611-15634384 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-33
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:152-397
               
               
               Cow position:chr25:12510144-12509901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:152-415
               
               
               Cow position:chr25:19364193-19363933 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 13

               
               
               Conread position:154-344
               
               
               Cow position:chr25:7449675-7449857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:148
               
               
               Alignm E-value:4e-35
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:154-354
               
               
               Cow position:chr25:18202059-18201862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):19, 72

               
               
               Conread position:154-400
               
               
               Cow position:chr25:14157489-14157738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 28

               
               
               Conread position:154-411
               
               
               Cow position:chr25:11051397-11051652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:194
               
               
               Alignm E-value:4.2039e-45
               
               
               Alignm gaps (pig, cow):92, 34

               
               
               Conread position:158-354
               
               
               Cow position:chr25:22346644-22346846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:142
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:158-366
               
               
               Cow position:chr25:3373501-3373303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:158-395
               
               
               Cow position:chr25:4245561-4245778 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:169
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:160-414
               
               
               Cow position:chr25:4488793-4489035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):86, 59

               
               
               Conread position:162-398
               
               
               Cow position:chr25:6928633-6928397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:167
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):100, 120

               
               
               Conread position:162-500
               
               
               Cow position:chr25:9843052-9843376 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 5

               
               
               Conread position:163-311
               
               
               Cow position:chr25:13640260-13640405 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-23
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:166-343
               
               
               Cow position:chr25:33557153-33557330 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):77, 96

               
               
               Conread position:166-347
               
               
               Cow position:chr25:26642462-26642647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:142
               
               
               Alignm E-value:3e-34
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:167-343
               
               
               Cow position:chr25:24504617-24504445 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:167-360
               
               
               Cow position:chr25:30816766-30816962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:138
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:167-385
               
               
               Cow position:chr25:20157417-20157200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):72, 38

               
               
               Conread position:167-414
               
               
               Cow position:chr25:36872242-36872485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:181
               
               
               Alignm E-value:1.99993e-41
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:167-481
               
               
               Cow position:chr25:7013842-7013529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:205
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):215, 30

               
               
               Conread position:168-405
               
               
               Cow position:chr25:17119626-17119858 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-29
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:168-412
               
               
               Cow position:chr25:11433072-11432818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:171-335
               
               
               Cow position:chr25:13139704-13139872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):55, 138

               
               
               Conread position:172-351
               
               
               Cow position:chr25:7035440-7035620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:174-351
               
               
               Cow position:chr25:22317568-22317745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:177-500
               
               
               Cow position:chr25:13566852-13567179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:227
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 253

               
               
               Conread position:180-398
               
               
               Cow position:chr25:36555796-36555578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-34
               
               
               Alignm gaps (pig, cow):75, 91

               
               
               Conread position:181-351
               
               
               Cow position:chr25:9315915-9316086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):63, 16

               
               
               Conread position:188-322
               
               
               Cow position:chr25:30449943-30450080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:103
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:188-385
               
               
               Cow position:chr25:8102569-8102766 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):58, 93

               
               
               Conread position:188-412
               
               
               Cow position:chr25:13767868-13768093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):6, 161

               
               
               Conread position:189-515
               
               
               Cow position:chr25:34242195-34241877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:215
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):205, 49

               
               
               Conread position:193-398
               
               
               Cow position:chr25:4947869-4948073 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-38
               
               
               Alignm gaps (pig, cow):71, 43

               
               
               Conread position:193-421
               
               
               Cow position:chr25:36120408-36120632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:197-308
               
               
               Cow position:chr25:35902423-35902536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:114
               
               
               Alignm identity:90
               
               
               Alignm E-value:8e-21
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:197-430
               
               
               Cow position:chr25:22341437-22341669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):68, 14

               
               
               Conread position:200-487
               
               
               Cow position:chr25:7799466-7799732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-39
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:200-498
               
               
               Cow position:chr25:26051814-26052125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):62, 111

               
               
               Conread position:201-398
               
               
               Cow position:chr25:12806958-12807149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-22
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:201-442
               
               
               Cow position:chr25:23745171-23745411 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):49, 197

               
               
               Conread position:201-484
               
               
               Cow position:chr25:13621445-13621160 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-30
               
               
               Alignm gaps (pig, cow):53, 62

               
               
               Conread position:201-517
               
               
               Cow position:chr25:7023080-7023398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:214
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):50, 184

               
               
               Conread position:206-397
               
               
               Cow position:chr25:40931194-40931383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-24
               
               
               Alignm gaps (pig, cow):45, 31

               
               
               Conread position:210-384
               
               
               Cow position:chr25:14809203-14809370 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:129
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:210-420
               
               
               Cow position:chr25:23504970-23505185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:211-398
               
               
               Cow position:chr25:6134169-6133980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:137
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):12, 125

               
               
               Conread position:211-410
               
               
               Cow position:chr25:36021247-36021446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:137
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):46, 100

               
               
               Conread position:213-398
               
               
               Cow position:chr25:7379224-7379036 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:136
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):33, 19

               
               
               Conread position:213-545
               
               
               Cow position:chr25:22261372-22261041 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:234
               
               
               Alignm E-value:4e-25
               
               
               Alignm gaps (pig, cow):209, 23

               
               
               Conread position:217-423
               
               
               Cow position:chr25:26306276-26306070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-26
               
               
               Alignm gaps (pig, cow):32, 43

               
               
               Conread position:219-415
               
               
               Cow position:chr25:7012360-7012551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):137, 42

               
               
               Conread position:221-414
               
               
               Cow position:chr25:1840255-1840449 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:141
               
               
               Alignm E-value:5e-28
               
               
               Alignm gaps (pig, cow):43, 177

               
               
               Conread position:240-513
               
               
               Cow position:chr25:28597658-28597397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):72, 19

               
               
               Conread position:243-406
               
               
               Cow position:chr25:18810297-18810464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:126
               
               
               Alignm E-value:5e-27
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:244-500
               
               
               Cow position:chr25:22348507-22348263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-30
               
               
               Alignm gaps (pig, cow):12, 152

               
               
               Conread position:249-397
               
               
               Cow position:chr25:18288806-18288658 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):144, 59

               
               
               Conread position:250-396
               
               
               Cow position:chr25:9107559-9107415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-25
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:263-412
               
               
               Cow position:chr25:13222876-13223026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:112
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):136, 0

               
               
               Conread position:271-421
               
               
               Cow position:chr25:15463571-15463719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:3e-23
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:271-513
               
               
               Cow position:chr25:30625099-30624861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-24
               
               
               Alignm gaps (pig, cow):168, 129

               
               
               Conread position:272-543
               
               
               Cow position:chr25:15218121-15218392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:191
               
               
               Alignm E-value:1e-26
               
               
               Alignm gaps (pig, cow):128, 38

               
               
               Conread position:280-398
               
               
               Cow position:chr25:34967516-34967398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:92
               
               
               Alignm E-value:9e-22
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:283-398
               
               
               Cow position:chr25:23998928-23998813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:116
               
               
               Alignm identity:90
               
               
               Alignm E-value:3e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:314-514
               
               
               Cow position:chr25:32907965-32908161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-22
               
               
               Alignm gaps (pig, cow):125, 87
Show alignments to all cow chromosomes.