Non-Coding RNA Search

Cow genome map


           Conread name:
           Ss1.1-Mixn-0038g14.5
        

               Conread position:
               1-110
               

               Cow position:
               chr5:12867108-12866998 (view UCSC Genome Browser custom track)
               

               Alignm length:
               111
               

               Alignm identity:
               91
               

               Alignm E-value:
               2e-23
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-135
               

               Cow position:
               chr5:75259569-75259704 (view UCSC Genome Browser custom track)
               

               Alignm length:
               136
               

               Alignm identity:
               102
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               57, 0
               

               Conread position:
               1-148
               

               Cow position:
               chr5:39284540-39284388 (view UCSC Genome Browser custom track)
               

               Alignm length:
               153
               

               Alignm identity:
               113
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-157
               

               Cow position:
               chr5:42671287-42671142 (view UCSC Genome Browser custom track)
               

               Alignm length:
               158
               

               Alignm identity:
               122
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               71, 24
               

               Conread position:
               1-167
               

               Cow position:
               chr5:52289513-52289685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               126
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-168
               

               Cow position:
               chr5:27011035-27011206 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               134
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               50, 75
               

               Conread position:
               1-168
               

               Cow position:
               chr5:46023437-46023270 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               134
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               125, 142
               

               Conread position:
               1-168
               

               Cow position:
               chr5:46130039-46129873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               131
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               125, 141
               

               Conread position:
               1-169
               

               Cow position:
               chr5:31437269-31437101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               95, 89
               

               Conread position:
               1-169
               

               Cow position:
               chr5:51761429-51761256 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               50, 87
               

               Conread position:
               1-170
               

               Cow position:
               chr5:4353756-4353931 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               54, 99
               

               Conread position:
               1-170
               

               Cow position:
               chr5:15088930-15089102 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               122, 16
               

               Conread position:
               1-170
               

               Cow position:
               chr5:15151739-15151575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               127
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               106, 0
               

               Conread position:
               1-170
               

               Cow position:
               chr5:19751595-19751755 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               137
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               1-170
               

               Cow position:
               chr5:21937662-21937498 (view UCSC Genome Browser custom track)
               

               Alignm length:
               170
               

               Alignm identity:
               123
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               58, 0
               

               Conread position:
               1-170
               

               Cow position:
               chr5:30347221-30347046 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               128
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               31, 0
               

               Conread position:
               1-170
               

               Cow position:
               chr5:40710168-40710335 (view UCSC Genome Browser custom track)
               

               Alignm length:
               171
               

               Alignm identity:
               121
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               50, 127
               

               Conread position:
               1-170
               

               Cow position:
               chr5:45192052-45191878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               175
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-171
               

               Cow position:
               chr5:40269986-40269815 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               129
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               51, 28
               

               Conread position:
               1-172
               

               Cow position:
               chr5:26058876-26059049 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               125
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               125, 55
               

               Conread position:
               1-172
               

               Cow position:
               chr5:60730027-60730203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               127
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-173
               

               Cow position:
               chr5:46080515-46080343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               176
               

               Alignm identity:
               136
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               125, 142
               

               Conread position:
               1-174
               

               Cow position:
               chr5:19969291-19969113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               179
               

               Alignm identity:
               149
               

               Alignm E-value:
               2.00386e-43
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1-175
               

               Cow position:
               chr5:57494674-57494493 (view UCSC Genome Browser custom track)
               

               Alignm length:
               182
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               56, 0
               

               Conread position:
               1-177
               

               Cow position:
               chr5:52269445-52269267 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               136
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               51, 115
               

               Conread position:
               1-179
               

               Cow position:
               chr5:73070188-73070365 (view UCSC Genome Browser custom track)
               

               Alignm length:
               181
               

               Alignm identity:
               132
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               56, 123
               

               Conread position:
               1-182
               

               Cow position:
               chr5:60947959-60948143 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               145
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               55, 114
               

               Conread position:
               1-185
               

               Cow position:
               chr5:46708921-46709112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               193
               

               Alignm identity:
               137
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               21, 80
               

               Conread position:
               1-185
               

               Cow position:
               chr5:53825265-53825440 (view UCSC Genome Browser custom track)
               

               Alignm length:
               186
               

               Alignm identity:
               146
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               165, 55
               

               Conread position:
               1-186
               

               Cow position:
               chr5:58548627-58548442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               187
               

               Alignm identity:
               135
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               51, 168
               

               Conread position:
               1-189
               

               Cow position:
               chr5:15362810-15363000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               192
               

               Alignm identity:
               134
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               56, 174
               

               Conread position:
               1-196
               

               Cow position:
               chr5:30176439-30176239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               201
               

               Alignm identity:
               143
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-198
               

               Cow position:
               chr5:41981142-41981336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               200
               

               Alignm identity:
               155
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               50, 108
               

               Conread position:
               1-202
               

               Cow position:
               chr5:50645711-50645505 (view UCSC Genome Browser custom track)
               

               Alignm length:
               210
               

               Alignm identity:
               150
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               55, 99
               

               Conread position:
               1-202
               

               Cow position:
               chr5:62436889-62437095 (view UCSC Genome Browser custom track)
               

               Alignm length:
               208
               

               Alignm identity:
               148
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               117, 196
               

               Conread position:
               1-204
               

               Cow position:
               chr5:17386853-17386643 (view UCSC Genome Browser custom track)
               

               Alignm length:
               211
               

               Alignm identity:
               144
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-204
               

               Cow position:
               chr5:26101485-26101688 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               55, 123
               

               Conread position:
               1-204
               

               Cow position:
               chr5:48718565-48718768 (view UCSC Genome Browser custom track)
               

               Alignm length:
               205
               

               Alignm identity:
               138
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               168, 138
               

               Conread position:
               1-208
               

               Cow position:
               chr5:8165821-8166033 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               147
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-208
               

               Cow position:
               chr5:32342657-32342443 (view UCSC Genome Browser custom track)
               

               Alignm length:
               219
               

               Alignm identity:
               154
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               16, 61
               

               Conread position:
               1-208
               

               Cow position:
               chr5:44703083-44703294 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               155
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               124, 56
               

               Conread position:
               1-208
               

               Cow position:
               chr5:55138826-55139039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               214
               

               Alignm identity:
               154
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               51, 0
               

               Conread position:
               1-210
               

               Cow position:
               chr5:54875936-54875728 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               169, 16
               

               Conread position:
               1-214
               

               Cow position:
               chr5:29366748-29366966 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               157
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 90
               

               Conread position:
               1-216
               

               Cow position:
               chr5:35989057-35989278 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-220
               

               Cow position:
               chr5:72045900-72045686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               222
               

               Alignm identity:
               171
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               50, 116
               

               Conread position:
               1-221
               

               Cow position:
               chr5:54746115-54745890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               156
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               70, 219
               

               Conread position:
               1-222
               

               Cow position:
               chr5:9751890-9752117 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               154
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               68, 83
               

               Conread position:
               1-224
               

               Cow position:
               chr5:19300039-19299810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               160
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-224
               

               Cow position:
               chr5:53735928-53736151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 99
               

               Conread position:
               1-224
               

               Cow position:
               chr5:66119515-66119285 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               164
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               16, 179
               

               Conread position:
               1-225
               

               Cow position:
               chr5:29969374-29969604 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               165
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               61, 0
               

               Conread position:
               1-225
               

               Cow position:
               chr5:31730927-31731159 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               161
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               56, 146
               

               Conread position:
               1-227
               

               Cow position:
               chr5:50864101-50864332 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               170
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               30, 196
               

               Conread position:
               1-227
               

               Cow position:
               chr5:62678399-62678630 (view UCSC Genome Browser custom track)
               

               Alignm length:
               232
               

               Alignm identity:
               165
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1-227
               

               Cow position:
               chr5:69099267-69099500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               182
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               40, 0
               

               Conread position:
               1-230
               

               Cow position:
               chr5:12672281-12672059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               175
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               54, 33
               

               Conread position:
               1-230
               

               Cow position:
               chr5:37366631-37366872 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               187
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               43, 0
               

               Conread position:
               1-230
               

               Cow position:
               chr5:48799800-48800029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               158
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               56, 176
               

               Conread position:
               1-230
               

               Cow position:
               chr5:50839589-50839821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               159
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               1-233
               

               Cow position:
               chr5:67913521-67913758 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               56, 32
               

               Conread position:
               1-234
               

               Cow position:
               chr5:16085057-16084819 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               69, 37
               

               Conread position:
               1-234
               

               Cow position:
               chr5:62173414-62173648 (view UCSC Genome Browser custom track)
               

               Alignm length:
               236
               

               Alignm identity:
               174
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               56, 154
               

               Conread position:
               1-234
               

               Cow position:
               chr5:64844376-64844151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               190
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 117
               

               Conread position:
               1-236
               

               Cow position:
               chr5:23397621-23397861 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               55, 30
               

               Conread position:
               1-236
               

               Cow position:
               chr5:33180647-33180885 (view UCSC Genome Browser custom track)
               

               Alignm length:
               240
               

               Alignm identity:
               167
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               56, 218
               

               Conread position:
               1-236
               

               Cow position:
               chr5:33792370-33792598 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               168
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               168, 45
               

               Conread position:
               1-236
               

               Cow position:
               chr5:46653644-46653882 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               168
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               54, 65
               

               Conread position:
               1-236
               

               Cow position:
               chr5:52205218-52205458 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               123, 0
               

               Conread position:
               1-236
               

               Cow position:
               chr5:57830266-57830025 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               70, 0
               

               Conread position:
               1-236
               

               Cow position:
               chr5:70035140-70035373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               237
               

               Alignm identity:
               161
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               168, 188
               

               Conread position:
               1-238
               

               Cow position:
               chr5:18113832-18113595 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               169
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               114, 143
               

               Conread position:
               1-238
               

               Cow position:
               chr5:58004985-58005230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               247
               

               Alignm identity:
               184
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               125, 195
               

               Conread position:
               1-240
               

               Cow position:
               chr5:14630167-14629923 (view UCSC Genome Browser custom track)
               

               Alignm length:
               249
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               55, 63
               

               Conread position:
               1-241
               

               Cow position:
               chr5:14538908-14538676 (view UCSC Genome Browser custom track)
               

               Alignm length:
               242
               

               Alignm identity:
               181
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               194, 98
               

               Conread position:
               1-242
               

               Cow position:
               chr5:43329952-43329710 (view UCSC Genome Browser custom track)
               

               Alignm length:
               246
               

               Alignm identity:
               172
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               55, 134
               

               Conread position:
               1-249
               

               Cow position:
               chr5:14420604-14420353 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               194
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               55, 199
               

               Conread position:
               1-249
               

               Cow position:
               chr5:41229453-41229696 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               53, 90
               

               Conread position:
               1-249
               

               Cow position:
               chr5:42747902-42748147 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               136, 15
               

               Conread position:
               1-249
               

               Cow position:
               chr5:50950294-50950544 (view UCSC Genome Browser custom track)
               

               Alignm length:
               251
               

               Alignm identity:
               196
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 0
               

               Conread position:
               1-249
               

               Cow position:
               chr5:51315107-51314857 (view UCSC Genome Browser custom track)
               

               Alignm length:
               257
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               16, 43
               

               Conread position:
               1-250
               

               Cow position:
               chr5:17982647-17982397 (view UCSC Genome Browser custom track)
               

               Alignm length:
               254
               

               Alignm identity:
               170
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               55, 161
               

               Conread position:
               1-250
               

               Cow position:
               chr5:42667651-42667399 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               194
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               24, 105
               

               Conread position:
               1-250
               

               Cow position:
               chr5:51292990-51292729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               17, 116
               

               Conread position:
               1-252
               

               Cow position:
               chr5:1398349-1398085 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               17, 0
               

               Conread position:
               1-252
               

               Cow position:
               chr5:4952497-4952753 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               69, 63
               

               Conread position:
               1-252
               

               Cow position:
               chr5:35145091-35145342 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 141
               

               Conread position:
               1-253
               

               Cow position:
               chr5:53184733-53184478 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               181
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               94, 89
               

               Conread position:
               1-257
               

               Cow position:
               chr5:31020373-31020141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               196
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 63
               

               Conread position:
               1-257
               

               Cow position:
               chr5:33348006-33348243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               184
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               55, 12
               

               Conread position:
               1-259
               

               Cow position:
               chr5:6151089-6150826 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               56, 255
               

               Conread position:
               1-261
               

               Cow position:
               chr5:14781146-14780890 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               55, 60
               

               Conread position:
               1-261
               

               Cow position:
               chr5:15112489-15112224 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               185
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 259
               

               Conread position:
               1-262
               

               Cow position:
               chr5:20974705-20974442 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               193
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               28, 150
               

               Conread position:
               1-262
               

               Cow position:
               chr5:61030488-61030222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               199
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 246
               

               Conread position:
               1-263
               

               Cow position:
               chr5:23856422-23856157 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               200
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               25, 105
               

               Conread position:
               1-264
               

               Cow position:
               chr5:58321970-58321694 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               187
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               38, 251
               

               Conread position:
               1-266
               

               Cow position:
               chr5:15677826-15678092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               175
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               54, 256
               

               Conread position:
               1-266
               

               Cow position:
               chr5:37736426-37736698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               66, 261
               

               Conread position:
               1-266
               

               Cow position:
               chr5:48972332-48972603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               191
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 127
               

               Conread position:
               1-267
               

               Cow position:
               chr5:6986899-6987172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               201
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               51, 177
               

               Conread position:
               1-267
               

               Cow position:
               chr5:12134347-12134618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               275
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               61, 148
               

               Conread position:
               1-267
               

               Cow position:
               chr5:41469551-41469813 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               191
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               52, 29
               

               Conread position:
               1-268
               

               Cow position:
               chr5:30808876-30808607 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               196
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               59, 234
               

               Conread position:
               1-269
               

               Cow position:
               chr5:2262633-2262361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               190
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               56, 258
               

               Conread position:
               1-269
               

               Cow position:
               chr5:14832863-14832612 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               195
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               58, 22
               

               Conread position:
               1-271
               

               Cow position:
               chr5:34709533-34709810 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               192
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               49, 262
               

               Conread position:
               1-271
               

               Cow position:
               chr5:49522469-49522746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               188
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 257
               

               Conread position:
               1-271
               

               Cow position:
               chr5:52732416-52732141 (view UCSC Genome Browser custom track)
               

               Alignm length:
               277
               

               Alignm identity:
               180
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               55, 255
               

               Conread position:
               1-272
               

               Cow position:
               chr5:26376309-26376566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               274
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               57, 128
               

               Conread position:
               1-274
               

               Cow position:
               chr5:73484846-73484566 (view UCSC Genome Browser custom track)
               

               Alignm length:
               283
               

               Alignm identity:
               188
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 261
               

               Conread position:
               1-275
               

               Cow position:
               chr5:37942052-37941777 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               203
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               50, 229
               

               Conread position:
               1-275
               

               Cow position:
               chr5:40831054-40831326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 98
               

               Conread position:
               1-275
               

               Cow position:
               chr5:55723295-55723573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               281
               

               Alignm identity:
               189
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 28
               

               Conread position:
               1-275
               

               Cow position:
               chr5:59269484-59269757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               192
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               124, 202
               

               Conread position:
               1-275
               

               Cow position:
               chr5:63566047-63566327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               198
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               56, 260
               

               Conread position:
               1-275
               

               Cow position:
               chr5:66112415-66112139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               280
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               70, 31
               

               Conread position:
               1-275
               

               Cow position:
               chr5:76097724-76097445 (view UCSC Genome Browser custom track)
               

               Alignm length:
               285
               

               Alignm identity:
               196
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               51, 63
               

               Conread position:
               1-276
               

               Cow position:
               chr5:70290226-70290492 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               201
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               55, 130
               

               Conread position:
               1-279
               

               Cow position:
               chr5:64392895-64393176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               284
               

               Alignm identity:
               206
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 259
               

               Conread position:
               1-280
               

               Cow position:
               chr5:49116595-49116309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               289
               

               Alignm identity:
               198
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               55, 261
               

               Conread position:
               1-282
               

               Cow position:
               chr5:72902299-72902584 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               205
               

               Alignm E-value:
               7e-35
               

               Alignm gaps (pig, cow):
               50, 178
               

               Conread position:
               1-284
               

               Cow position:
               chr5:62827014-62826727 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               27, 0
               

               Conread position:
               1-291
               

               Cow position:
               chr5:19470442-19470158 (view UCSC Genome Browser custom track)
               

               Alignm length:
               296
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 55
               

               Conread position:
               1-291
               

               Cow position:
               chr5:49820882-49821172 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               222
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               12, 102
               

               Conread position:
               1-292
               

               Cow position:
               chr5:44583377-44583099 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               117, 0
               

               Conread position:
               1-292
               

               Cow position:
               chr5:58460664-58460364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               217
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               55, 261
               

               Conread position:
               1-294
               

               Cow position:
               chr5:4389094-4389387 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               206
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               94, 89
               

               Conread position:
               1-294
               

               Cow position:
               chr5:51357761-51357466 (view UCSC Genome Browser custom track)
               

               Alignm length:
               299
               

               Alignm identity:
               225
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               1-298
               

               Cow position:
               chr5:20344910-20345201 (view UCSC Genome Browser custom track)
               

               Alignm length:
               309
               

               Alignm identity:
               227
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               119, 55
               

               Conread position:
               1-300
               

               Cow position:
               chr5:47888974-47888670 (view UCSC Genome Browser custom track)
               

               Alignm length:
               307
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 239
               

               Conread position:
               1-300
               

               Cow position:
               chr5:49239998-49240302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               197
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               49, 259
               

               Conread position:
               1-301
               

               Cow position:
               chr5:34915883-34916173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               301
               

               Alignm identity:
               239
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1-301
               

               Cow position:
               chr5:59298218-59297920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               228
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 192
               

               Conread position:
               1-302
               

               Cow position:
               chr5:14153883-14154195 (view UCSC Genome Browser custom track)
               

               Alignm length:
               313
               

               Alignm identity:
               212
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               1-305
               

               Cow position:
               chr5:27015433-27015726 (view UCSC Genome Browser custom track)
               

               Alignm length:
               310
               

               Alignm identity:
               240
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 28
               

               Conread position:
               1-307
               

               Cow position:
               chr5:6086821-6086512 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               234
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 255
               

               Conread position:
               1-308
               

               Cow position:
               chr5:4797572-4797274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               312
               

               Alignm identity:
               241
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 137
               

               Conread position:
               1-308
               

               Cow position:
               chr5:54126821-54127122 (view UCSC Genome Browser custom track)
               

               Alignm length:
               311
               

               Alignm identity:
               204
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               107, 114
               

               Conread position:
               1-308
               

               Cow position:
               chr5:70050495-70050791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               315
               

               Alignm identity:
               232
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 29
               

               Conread position:
               1-312
               

               Cow position:
               chr5:10261501-10261180 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               225
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               27, 50
               

               Conread position:
               1-312
               

               Cow position:
               chr5:22934715-22934396 (view UCSC Genome Browser custom track)
               

               Alignm length:
               320
               

               Alignm identity:
               217
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               122, 0
               

               Conread position:
               1-312
               

               Cow position:
               chr5:26173625-26173309 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               220
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               55, 229
               

               Conread position:
               1-314
               

               Cow position:
               chr5:38683097-38683414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               224
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 0
               

               Conread position:
               1-316
               

               Cow position:
               chr5:23957041-23956723 (view UCSC Genome Browser custom track)
               

               Alignm length:
               323
               

               Alignm identity:
               212
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               49, 208
               

               Conread position:
               1-316
               

               Cow position:
               chr5:53075104-53074786 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               49, 90
               

               Conread position:
               1-317
               

               Cow position:
               chr5:54714001-54713673 (view UCSC Genome Browser custom track)
               

               Alignm length:
               332
               

               Alignm identity:
               236
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               24, 157
               

               Conread position:
               1-321
               

               Cow position:
               chr5:34612539-34612863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               328
               

               Alignm identity:
               214
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               55, 256
               

               Conread position:
               1-324
               

               Cow position:
               chr5:51746982-51747307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               213
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               50, 180
               

               Conread position:
               1-325
               

               Cow position:
               chr5:32378613-32378912 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               230
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               52, 16
               

               Conread position:
               1-328
               

               Cow position:
               chr5:54405153-54404820 (view UCSC Genome Browser custom track)
               

               Alignm length:
               337
               

               Alignm identity:
               243
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               114, 23
               

               Conread position:
               1-331
               

               Cow position:
               chr5:63840405-63840071 (view UCSC Genome Browser custom track)
               

               Alignm length:
               340
               

               Alignm identity:
               246
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 139
               

               Conread position:
               1-335
               

               Cow position:
               chr5:20555008-20554678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               339
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               125, 175
               

               Conread position:
               1-338
               

               Cow position:
               chr5:9099694-9099356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               343
               

               Alignm identity:
               222
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               123, 210
               

               Conread position:
               1-342
               

               Cow position:
               chr5:46052063-46051714 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               123, 266
               

               Conread position:
               1-342
               

               Cow position:
               chr5:47313214-47313556 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               253
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 108
               

               Conread position:
               1-344
               

               Cow position:
               chr5:59082451-59082109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               350
               

               Alignm identity:
               244
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               122, 59
               

               Conread position:
               1-347
               

               Cow position:
               chr5:72314716-72314367 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               221
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               55, 245
               

               Conread position:
               1-348
               

               Cow position:
               chr5:31145041-31144698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               17, 45
               

               Conread position:
               1-349
               

               Cow position:
               chr5:12149287-12149636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               259
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 127
               

               Conread position:
               1-349
               

               Cow position:
               chr5:23647266-23646926 (view UCSC Genome Browser custom track)
               

               Alignm length:
               351
               

               Alignm identity:
               225
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               21, 48
               

               Conread position:
               1-349
               

               Cow position:
               chr5:27007637-27007987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               248
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               28, 57
               

               Conread position:
               1-349
               

               Cow position:
               chr5:31469842-31469503 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 71
               

               Conread position:
               1-349
               

               Cow position:
               chr5:46732596-46732244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               235
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               61, 286
               

               Conread position:
               1-349
               

               Cow position:
               chr5:48535548-48535887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               241
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               53, 20
               

               Conread position:
               1-349
               

               Cow position:
               chr5:48804680-48804328 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               235
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               69, 31
               

               Conread position:
               1-349
               

               Cow position:
               chr5:62428006-62428364 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               55, 149
               

               Conread position:
               1-350
               

               Cow position:
               chr5:5938065-5938413 (view UCSC Genome Browser custom track)
               

               Alignm length:
               353
               

               Alignm identity:
               261
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 204
               

               Conread position:
               1-350
               

               Cow position:
               chr5:45999280-45998930 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               238
               

               Alignm E-value:
               1e-38
               

               Alignm gaps (pig, cow):
               56, 75
               

               Conread position:
               1-350
               

               Cow position:
               chr5:59876997-59876642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               125, 265
               

               Conread position:
               1-351
               

               Cow position:
               chr5:2918221-2918575 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               56, 41
               

               Conread position:
               1-351
               

               Cow position:
               chr5:3545061-3545414 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               242
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               54, 223
               

               Conread position:
               1-351
               

               Cow position:
               chr5:3696704-3697059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               241
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               55, 242
               

               Conread position:
               1-351
               

               Cow position:
               chr5:4507220-4506873 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 251
               

               Conread position:
               1-351
               

               Cow position:
               chr5:7397287-7397633 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               237
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               55, 128
               

               Conread position:
               1-351
               

               Cow position:
               chr5:7498219-7497864 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               234
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               55, 266
               

               Conread position:
               1-351
               

               Cow position:
               chr5:9874001-9874361 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               232
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               22, 262
               

               Conread position:
               1-351
               

               Cow position:
               chr5:18287407-18287761 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               55, 203
               

               Conread position:
               1-351
               

               Cow position:
               chr5:18557652-18557307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               53, 99
               

               Conread position:
               1-351
               

               Cow position:
               chr5:20410897-20410543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               237
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 261
               

               Conread position:
               1-351
               

               Cow position:
               chr5:21189983-21190330 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               229
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               55, 223
               

               Conread position:
               1-351
               

               Cow position:
               chr5:22071827-22072175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               229
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               56, 204
               

               Conread position:
               1-351
               

               Cow position:
               chr5:22737846-22738197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               252
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               56, 93
               

               Conread position:
               1-351
               

               Cow position:
               chr5:24300020-24300379 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               243
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               28, 77
               

               Conread position:
               1-351
               

               Cow position:
               chr5:26505665-26505307 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               241
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               56, 302
               

               Conread position:
               1-351
               

               Cow position:
               chr5:28247917-28248265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 189
               

               Conread position:
               1-351
               

               Cow position:
               chr5:33081049-33080700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               44, 72
               

               Conread position:
               1-351
               

               Cow position:
               chr5:33661595-33661938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               265
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 195
               

               Conread position:
               1-351
               

               Cow position:
               chr5:34506185-34505834 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 191
               

               Conread position:
               1-351
               

               Cow position:
               chr5:37255615-37255243 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               260
               

               Alignm E-value:
               4.00001e-40
               

               Alignm gaps (pig, cow):
               50, 302
               

               Conread position:
               1-351
               

               Cow position:
               chr5:37586301-37585938 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               241
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 199
               

               Conread position:
               1-351
               

               Cow position:
               chr5:37654021-37654376 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               241
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 118
               

               Conread position:
               1-351
               

               Cow position:
               chr5:39094294-39094642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 111
               

               Conread position:
               1-351
               

               Cow position:
               chr5:40889542-40889205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 17
               

               Conread position:
               1-351
               

               Cow position:
               chr5:43437176-43436821 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               55, 257
               

               Conread position:
               1-351
               

               Cow position:
               chr5:43990134-43990489 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               55, 71
               

               Conread position:
               1-351
               

               Cow position:
               chr5:47559795-47559448 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               242
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               50, 238
               

               Conread position:
               1-351
               

               Cow position:
               chr5:47704394-47704034 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               273
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 253
               

               Conread position:
               1-351
               

               Cow position:
               chr5:48519373-48519730 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               240
               

               Alignm E-value:
               2e-33
               

               Alignm gaps (pig, cow):
               55, 100
               

               Conread position:
               1-351
               

               Cow position:
               chr5:54337664-54338008 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               234
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               55, 139
               

               Conread position:
               1-351
               

               Cow position:
               chr5:55430376-55430732 (view UCSC Genome Browser custom track)
               

               Alignm length:
               361
               

               Alignm identity:
               237
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               56, 20
               

               Conread position:
               1-351
               

               Cow position:
               chr5:55631830-55632184 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               231
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               55, 286
               

               Conread position:
               1-351
               

               Cow position:
               chr5:56234087-56233737 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               235
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               61, 37
               

               Conread position:
               1-351
               

               Cow position:
               chr5:58246097-58246450 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               68, 55
               

               Conread position:
               1-351
               

               Cow position:
               chr5:58770109-58769754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               240
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               55, 257
               

               Conread position:
               1-351
               

               Cow position:
               chr5:59339559-59339914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               232
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               61, 261
               

               Conread position:
               1-351
               

               Cow position:
               chr5:63103652-63104006 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               238
               

               Alignm E-value:
               4.00001e-41
               

               Alignm gaps (pig, cow):
               55, 243
               

               Conread position:
               1-351
               

               Cow position:
               chr5:64778240-64777892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               224
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               55, 181
               

               Conread position:
               1-351
               

               Cow position:
               chr5:66815840-66815480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               366
               

               Alignm identity:
               256
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 109
               

               Conread position:
               1-351
               

               Cow position:
               chr5:70593239-70592886 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               51, 183
               

               Conread position:
               1-351
               

               Cow position:
               chr5:74550209-74550555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               356
               

               Alignm identity:
               221
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               56, 212
               

               Conread position:
               1-354
               

               Cow position:
               chr5:18702472-18702125 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               258
               

               Alignm E-value:
               1.4013e-45
               

               Alignm gaps (pig, cow):
               51, 211
               

               Conread position:
               1-354
               

               Cow position:
               chr5:21524905-21525254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               363
               

               Alignm identity:
               271
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 250
               

               Conread position:
               1-354
               

               Cow position:
               chr5:38805603-38805250 (view UCSC Genome Browser custom track)
               

               Alignm length:
               364
               

               Alignm identity:
               239
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               67, 176
               

               Conread position:
               1-354
               

               Cow position:
               chr5:39333818-39333436 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               261
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               55, 125
               

               Conread position:
               1-355
               

               Cow position:
               chr5:16508837-16509202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 89
               

               Conread position:
               1-358
               

               Cow position:
               chr5:3281572-3281934 (view UCSC Genome Browser custom track)
               

               Alignm length:
               368
               

               Alignm identity:
               268
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 90
               

               Conread position:
               1-359
               

               Cow position:
               chr5:7176064-7176435 (view UCSC Genome Browser custom track)
               

               Alignm length:
               375
               

               Alignm identity:
               244
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               57, 110
               

               Conread position:
               1-360
               

               Cow position:
               chr5:4551873-4552244 (view UCSC Genome Browser custom track)
               

               Alignm length:
               377
               

               Alignm identity:
               257
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               125, 195
               

               Conread position:
               1-360
               

               Cow position:
               chr5:31097064-31096700 (view UCSC Genome Browser custom track)
               

               Alignm length:
               371
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 194
               

               Conread position:
               1-360
               

               Cow position:
               chr5:32153575-32153218 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               262
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 192
               

               Conread position:
               1-360
               

               Cow position:
               chr5:45705788-45706135 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 191
               

               Conread position:
               1-360
               

               Cow position:
               chr5:63964440-63964064 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               269
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               30, 240
               

               Conread position:
               1-360
               

               Cow position:
               chr5:73967691-73967331 (view UCSC Genome Browser custom track)
               

               Alignm length:
               367
               

               Alignm identity:
               243
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               56, 140
               

               Conread position:
               1-364
               

               Cow position:
               chr5:31480894-31481254 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               267
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 120
               

               Conread position:
               1-364
               

               Cow position:
               chr5:57327529-57327907 (view UCSC Genome Browser custom track)
               

               Alignm length:
               384
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 24
               

               Conread position:
               1-364
               

               Cow position:
               chr5:62107754-62107380 (view UCSC Genome Browser custom track)
               

               Alignm length:
               378
               

               Alignm identity:
               257
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               69, 64
               

               Conread position:
               1-365
               

               Cow position:
               chr5:21040233-21039877 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               264
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 108
               

               Conread position:
               1-365
               

               Cow position:
               chr5:41604351-41604729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               385
               

               Alignm identity:
               262
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               57, 16
               

               Conread position:
               1-365
               

               Cow position:
               chr5:56467445-56467796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               372
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               89, 47
               

               Conread position:
               1-365
               

               Cow position:
               chr5:59303527-59303175 (view UCSC Genome Browser custom track)
               

               Alignm length:
               369
               

               Alignm identity:
               245
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               243, 110
               

               Conread position:
               1-365
               

               Cow position:
               chr5:65933187-65932837 (view UCSC Genome Browser custom track)
               

               Alignm length:
               370
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 88
               

               Conread position:
               1-366
               

               Cow position:
               chr5:52645339-52644973 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               20, 123
               

               Conread position:
               1-369
               

               Cow position:
               chr5:46235065-46234695 (view UCSC Genome Browser custom track)
               

               Alignm length:
               376
               

               Alignm identity:
               238
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               55, 224
               

               Conread position:
               1-371
               

               Cow position:
               chr5:5685318-5684943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               245
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               56, 75
               

               Conread position:
               1-375
               

               Cow position:
               chr5:6528421-6528799 (view UCSC Genome Browser custom track)
               

               Alignm length:
               387
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 198
               

               Conread position:
               1-377
               

               Cow position:
               chr5:61839929-61840308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 62
               

               Conread position:
               1-378
               

               Cow position:
               chr5:20407922-20407559 (view UCSC Genome Browser custom track)
               

               Alignm length:
               380
               

               Alignm identity:
               285
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               255, 58
               

               Conread position:
               1-379
               

               Cow position:
               chr5:35763031-35763384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               382
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 107
               

               Conread position:
               1-383
               

               Cow position:
               chr5:34442052-34441656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               274
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               24, 140
               

               Conread position:
               1-384
               

               Cow position:
               chr5:15598493-15598113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               303
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 149
               

               Conread position:
               1-384
               

               Cow position:
               chr5:34887457-34887066 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               281
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 70
               

               Conread position:
               1-384
               

               Cow position:
               chr5:64139304-64139685 (view UCSC Genome Browser custom track)
               

               Alignm length:
               388
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               127, 234
               

               Conread position:
               1-385
               

               Cow position:
               chr5:26133333-26132972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               386
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 172
               

               Conread position:
               1-386
               

               Cow position:
               chr5:38853100-38853475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               394
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 230
               

               Conread position:
               1-390
               

               Cow position:
               chr5:58793874-58793474 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 151
               

               Conread position:
               1-392
               

               Cow position:
               chr5:29903781-29903390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 86
               

               Conread position:
               1-392
               

               Cow position:
               chr5:63992423-63992039 (view UCSC Genome Browser custom track)
               

               Alignm length:
               395
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 190
               

               Conread position:
               1-393
               

               Cow position:
               chr5:44752571-44752173 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 210
               

               Conread position:
               1-397
               

               Cow position:
               chr5:6045027-6045434 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               314
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               52, 0
               

               Conread position:
               1-398
               

               Cow position:
               chr5:6504129-6503742 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               170, 32
               

               Conread position:
               1-398
               

               Cow position:
               chr5:7193173-7193555 (view UCSC Genome Browser custom track)
               

               Alignm length:
               401
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               252, 174
               

               Conread position:
               1-398
               

               Cow position:
               chr5:16206401-16206016 (view UCSC Genome Browser custom track)
               

               Alignm length:
               404
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 32
               

               Conread position:
               1-398
               

               Cow position:
               chr5:30276436-30276829 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               95, 46
               

               Conread position:
               1-398
               

               Cow position:
               chr5:55068462-55068845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               402
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 33
               

               Conread position:
               1-398
               

               Cow position:
               chr5:56523915-56524313 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               309
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 91
               

               Conread position:
               1-398
               

               Cow position:
               chr5:65941512-65941112 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 41
               

               Conread position:
               1-398
               

               Cow position:
               chr5:74643920-74643539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               100, 0
               

               Conread position:
               1-399
               

               Cow position:
               chr5:17027839-17028235 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               145, 47
               

               Conread position:
               1-399
               

               Cow position:
               chr5:27419980-27419589 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 45
               

               Conread position:
               1-399
               

               Cow position:
               chr5:28946318-28945920 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               276
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 151
               

               Conread position:
               1-399
               

               Cow position:
               chr5:37758063-37757699 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               272
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               50, 118
               

               Conread position:
               1-400
               

               Cow position:
               chr5:14314263-14314669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 0
               

               Conread position:
               1-401
               

               Cow position:
               chr5:37288950-37289346 (view UCSC Genome Browser custom track)
               

               Alignm length:
               407
               

               Alignm identity:
               260
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               55, 79
               

               Conread position:
               1-402
               

               Cow position:
               chr5:17087289-17086878 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               320
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 236
               

               Conread position:
               1-402
               

               Cow position:
               chr5:50722791-50723187 (view UCSC Genome Browser custom track)
               

               Alignm length:
               406
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 88
               

               Conread position:
               1-404
               

               Cow position:
               chr5:26094428-26094023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               415
               

               Alignm identity:
               282
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               134, 222
               

               Conread position:
               1-404
               

               Cow position:
               chr5:47756509-47756917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 204
               

               Conread position:
               1-404
               

               Cow position:
               chr5:60210398-60210000 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               273
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               50, 38
               

               Conread position:
               1-406
               

               Cow position:
               chr5:26990134-26990535 (view UCSC Genome Browser custom track)
               

               Alignm length:
               411
               

               Alignm identity:
               294
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               57, 143
               

               Conread position:
               1-407
               

               Cow position:
               chr5:74015681-74016088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               410
               

               Alignm identity:
               284
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               110, 308
               

               Conread position:
               1-408
               

               Cow position:
               chr5:360204-359790 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               28, 61
               

               Conread position:
               1-410
               

               Cow position:
               chr5:26097038-26097441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               289
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               163, 54
               

               Conread position:
               1-410
               

               Cow position:
               chr5:39936844-39937268 (view UCSC Genome Browser custom track)
               

               Alignm length:
               427
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 188
               

               Conread position:
               1-410
               

               Cow position:
               chr5:41164831-41165239 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               311
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               11, 20
               

               Conread position:
               1-410
               

               Cow position:
               chr5:55176633-55177038 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               108, 28
               

               Conread position:
               1-410
               

               Cow position:
               chr5:55942657-55942230 (view UCSC Genome Browser custom track)
               

               Alignm length:
               432
               

               Alignm identity:
               319
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               12, 23
               

               Conread position:
               1-411
               

               Cow position:
               chr5:50483121-50482706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               422
               

               Alignm identity:
               298
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 152
               

               Conread position:
               1-412
               

               Cow position:
               chr5:12352041-12351656 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 100
               

               Conread position:
               1-413
               

               Cow position:
               chr5:61725711-61726113 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               126, 166
               

               Conread position:
               1-414
               

               Cow position:
               chr5:42063944-42064358 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               169, 113
               

               Conread position:
               1-414
               

               Cow position:
               chr5:57935372-57934953 (view UCSC Genome Browser custom track)
               

               Alignm length:
               421
               

               Alignm identity:
               326
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 17
               

               Conread position:
               1-414
               

               Cow position:
               chr5:65752600-65753014 (view UCSC Genome Browser custom track)
               

               Alignm length:
               419
               

               Alignm identity:
               313
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 35
               

               Conread position:
               1-415
               

               Cow position:
               chr5:29827794-29828202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               417
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               56, 119
               

               Conread position:
               1-415
               

               Cow position:
               chr5:42845859-42845437 (view UCSC Genome Browser custom track)
               

               Alignm length:
               431
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 63
               

               Conread position:
               1-415
               

               Cow position:
               chr5:45845952-45845534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               323
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               123, 31
               

               Conread position:
               1-415
               

               Cow position:
               chr5:50599807-50600202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               327
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               124, 60
               

               Conread position:
               1-415
               

               Cow position:
               chr5:53055812-53055403 (view UCSC Genome Browser custom track)
               

               Alignm length:
               420
               

               Alignm identity:
               274
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               50, 86
               

               Conread position:
               1-415
               

               Cow position:
               chr5:55233035-55232659 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               288
               

               Alignm E-value:
               1e-39
               

               Alignm gaps (pig, cow):
               376, 31
               

               Conread position:
               1-419
               

               Cow position:
               chr5:61576280-61576711 (view UCSC Genome Browser custom track)
               

               Alignm length:
               434
               

               Alignm identity:
               306
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 244
               

               Conread position:
               1-467
               

               Cow position:
               chr5:5111336-5110869 (view UCSC Genome Browser custom track)
               

               Alignm length:
               478
               

               Alignm identity:
               376
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 157
               

               Conread position:
               1-493
               

               Cow position:
               chr5:41546149-41545650 (view UCSC Genome Browser custom track)
               

               Alignm length:
               511
               

               Alignm identity:
               362
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 37
               

               Conread position:
               1-503
               

               Cow position:
               chr5:63987706-63987190 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               375
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               84, 119
               

               Conread position:
               1-503
               

               Cow position:
               chr5:64321489-64321989 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               380
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 187
               

               Conread position:
               1-509
               

               Cow position:
               chr5:59185-58698 (view UCSC Genome Browser custom track)
               

               Alignm length:
               516
               

               Alignm identity:
               347
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               168, 22
               

               Conread position:
               1-512
               

               Cow position:
               chr5:44848270-44847791 (view UCSC Genome Browser custom track)
               

               Alignm length:
               525
               

               Alignm identity:
               363
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 18
               

               Conread position:
               1-514
               

               Cow position:
               chr5:12146434-12146952 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               330
               

               Alignm E-value:
               3e-38
               

               Alignm gaps (pig, cow):
               56, 256
               

               Conread position:
               1-514
               

               Cow position:
               chr5:14141428-14141950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               340
               

               Alignm E-value:
               5.00264e-43
               

               Alignm gaps (pig, cow):
               70, 152
               

               Conread position:
               1-514
               

               Cow position:
               chr5:62397096-62397618 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               327
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               47, 261
               

               Conread position:
               1-515
               

               Cow position:
               chr5:51151622-51151101 (view UCSC Genome Browser custom track)
               

               Alignm length:
               531
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               41, 233
               

               Conread position:
               1-526
               

               Cow position:
               chr5:72035344-72034849 (view UCSC Genome Browser custom track)
               

               Alignm length:
               532
               

               Alignm identity:
               354
               

               Alignm E-value:
               6.02558e-44
               

               Alignm gaps (pig, cow):
               55, 121
               

               Conread position:
               1-538
               

               Cow position:
               chr5:42665746-42665219 (view UCSC Genome Browser custom track)
               

               Alignm length:
               544
               

               Alignm identity:
               337
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               55, 99
               

               Conread position:
               1-546
               

               Cow position:
               chr5:55428297-55428856 (view UCSC Genome Browser custom track)
               

               Alignm length:
               566
               

               Alignm identity:
               352
               

               Alignm E-value:
               2e-35
               

               Alignm gaps (pig, cow):
               54, 291
               

               Conread position:
               2-127
               

               Cow position:
               chr5:24919135-24919009 (view UCSC Genome Browser custom track)
               

               Alignm length:
               127
               

               Alignm identity:
               103
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               50, 0
               

               Conread position:
               2-248
               

               Cow position:
               chr5:30816457-30816708 (view UCSC Genome Browser custom track)
               

               Alignm length:
               253
               

               Alignm identity:
               200
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 159
               

               Conread position:
               2-249
               

               Cow position:
               chr5:6130098-6130343 (view UCSC Genome Browser custom track)
               

               Alignm length:
               250
               

               Alignm identity:
               185
               

               Alignm E-value:
               1.99965e-42
               

               Alignm gaps (pig, cow):
               53, 30
               

               Conread position:
               2-250
               

               Cow position:
               chr5:19905535-19905276 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               191
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               52, 15
               

               Conread position:
               2-255
               

               Cow position:
               chr5:46294925-46294669 (view UCSC Genome Browser custom track)
               

               Alignm length:
               260
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               29, 66
               

               Conread position:
               2-257
               

               Cow position:
               chr5:56753470-56753725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               259
               

               Alignm identity:
               192
               

               Alignm E-value:
               7.00649e-45
               

               Alignm gaps (pig, cow):
               125, 15
               

               Conread position:
               2-260
               

               Cow position:
               chr5:3491943-3492197 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               210
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 121
               

               Conread position:
               2-261
               

               Cow position:
               chr5:75754356-75754092 (view UCSC Genome Browser custom track)
               

               Alignm length:
               266
               

               Alignm identity:
               179
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               49, 258
               

               Conread position:
               2-266
               

               Cow position:
               chr5:31285623-31285891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               272
               

               Alignm identity:
               186
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               12, 243
               

               Conread position:
               2-271
               

               Cow position:
               chr5:47343641-47343915 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               193
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 205
               

               Conread position:
               2-275
               

               Cow position:
               chr5:63033115-63033386 (view UCSC Genome Browser custom track)
               

               Alignm length:
               279
               

               Alignm identity:
               194
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               48, 124
               

               Conread position:
               2-298
               

               Cow position:
               chr5:17631131-17630840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               221
               

               Alignm E-value:
               8e-36
               

               Alignm gaps (pig, cow):
               49, 23
               

               Conread position:
               2-300
               

               Cow position:
               chr5:76098506-76098202 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               204
               

               Alignm E-value:
               2e-32
               

               Alignm gaps (pig, cow):
               12, 259
               

               Conread position:
               2-305
               

               Cow position:
               chr5:65924959-65924642 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               231
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               25, 98
               

               Conread position:
               2-308
               

               Cow position:
               chr5:23535911-23536221 (view UCSC Genome Browser custom track)
               

               Alignm length:
               314
               

               Alignm identity:
               201
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               49, 203
               

               Conread position:
               2-316
               

               Cow position:
               chr5:13806996-13806680 (view UCSC Genome Browser custom track)
               

               Alignm length:
               319
               

               Alignm identity:
               208
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               12, 109
               

               Conread position:
               2-324
               

               Cow position:
               chr5:43474588-43474910 (view UCSC Genome Browser custom track)
               

               Alignm length:
               326
               

               Alignm identity:
               247
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 257
               

               Conread position:
               2-335
               

               Cow position:
               chr5:58229445-58229772 (view UCSC Genome Browser custom track)
               

               Alignm length:
               341
               

               Alignm identity:
               234
               

               Alignm E-value:
               9e-37
               

               Alignm gaps (pig, cow):
               49, 119
               

               Conread position:
               2-342
               

               Cow position:
               chr5:34638627-34638967 (view UCSC Genome Browser custom track)
               

               Alignm length:
               342
               

               Alignm identity:
               277
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 130
               

               Conread position:
               2-344
               

               Cow position:
               chr5:35209730-35209390 (view UCSC Genome Browser custom track)
               

               Alignm length:
               348
               

               Alignm identity:
               249
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               133, 54
               

               Conread position:
               2-344
               

               Cow position:
               chr5:45170103-45170444 (view UCSC Genome Browser custom track)
               

               Alignm length:
               352
               

               Alignm identity:
               251
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 191
               

               Conread position:
               2-349
               

               Cow position:
               chr5:410953-410603 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               234
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               49, 242
               

               Conread position:
               2-351
               

               Cow position:
               chr5:1338161-1337807 (view UCSC Genome Browser custom track)
               

               Alignm length:
               358
               

               Alignm identity:
               236
               

               Alignm E-value:
               3e-36
               

               Alignm gaps (pig, cow):
               54, 256
               

               Conread position:
               2-351
               

               Cow position:
               chr5:8178924-8179274 (view UCSC Genome Browser custom track)
               

               Alignm length:
               357
               

               Alignm identity:
               231
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               125, 45
               

               Conread position:
               2-351
               

               Cow position:
               chr5:23140836-23140497 (view UCSC Genome Browser custom track)
               

               Alignm length:
               359
               

               Alignm identity:
               263
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 137
               

               Conread position:
               2-351
               

               Cow position:
               chr5:47871308-47870950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               362
               

               Alignm identity:
               257
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 27
               

               Conread position:
               2-351
               

               Cow position:
               chr5:55238967-55239302 (view UCSC Genome Browser custom track)
               

               Alignm length:
               355
               

               Alignm identity:
               229
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 121
               

               Conread position:
               2-352
               

               Cow position:
               chr5:63647725-63647384 (view UCSC Genome Browser custom track)
               

               Alignm length:
               354
               

               Alignm identity:
               250
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               144, 55
               

               Conread position:
               2-358
               

               Cow position:
               chr5:62870293-62869943 (view UCSC Genome Browser custom track)
               

               Alignm length:
               365
               

               Alignm identity:
               260
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 62
               

               Conread position:
               2-372
               

               Cow position:
               chr5:34049851-34050231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               381
               

               Alignm identity:
               275
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               55, 0
               

               Conread position:
               2-382
               

               Cow position:
               chr5:28927855-28927471 (view UCSC Genome Browser custom track)
               

               Alignm length:
               392
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 258
               

               Conread position:
               2-396
               

               Cow position:
               chr5:20783368-20783759 (view UCSC Genome Browser custom track)
               

               Alignm length:
               403
               

               Alignm identity:
               290
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               21, 56
               

               Conread position:
               2-398
               

               Cow position:
               chr5:43923407-43923023 (view UCSC Genome Browser custom track)
               

               Alignm length:
               408
               

               Alignm identity:
               282
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               121, 143
               

               Conread position:
               2-399
               

               Cow position:
               chr5:57365333-57364961 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               257
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               7, 170
               

               Conread position:
               2-402
               

               Cow position:
               chr5:34463847-34463439 (view UCSC Genome Browser custom track)
               

               Alignm length:
               413
               

               Alignm identity:
               283
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               16, 372
               

               Conread position:
               2-407
               

               Cow position:
               chr5:65887272-65886862 (view UCSC Genome Browser custom track)
               

               Alignm length:
               416
               

               Alignm identity:
               287
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 250
               

               Conread position:
               2-419
               

               Cow position:
               chr5:43457775-43457373 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               304
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               7, 64
               

               Conread position:
               2-421
               

               Cow position:
               chr5:14550844-14550424 (view UCSC Genome Browser custom track)
               

               Alignm length:
               426
               

               Alignm identity:
               301
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 265
               

               Conread position:
               2-478
               

               Cow position:
               chr5:48828889-48829354 (view UCSC Genome Browser custom track)
               

               Alignm length:
               492
               

               Alignm identity:
               336
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 222
               

               Conread position:
               2-503
               

               Cow position:
               chr5:4166412-4166892 (view UCSC Genome Browser custom track)
               

               Alignm length:
               512
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               49, 113
               

               Conread position:
               2-515
               

               Cow position:
               chr5:18573912-18574423 (view UCSC Genome Browser custom track)
               

               Alignm length:
               528
               

               Alignm identity:
               365
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 200
               

               Conread position:
               2-515
               

               Cow position:
               chr5:58519657-58519176 (view UCSC Genome Browser custom track)
               

               Alignm length:
               523
               

               Alignm identity:
               359
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               51, 83
               

               Conread position:
               2-518
               

               Cow position:
               chr5:27548753-27548231 (view UCSC Genome Browser custom track)
               

               Alignm length:
               530
               

               Alignm identity:
               325
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               7, 119
               

               Conread position:
               2-523
               

               Cow position:
               chr5:15478850-15479377 (view UCSC Genome Browser custom track)
               

               Alignm length:
               545
               

               Alignm identity:
               371
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               38, 218
               

               Conread position:
               3-131
               

               Cow position:
               chr5:12557664-12557536 (view UCSC Genome Browser custom track)
               

               Alignm length:
               129
               

               Alignm identity:
               97
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               0, 0
               

               Conread position:
               3-159
               

               Cow position:
               chr5:60015664-60015823 (view UCSC Genome Browser custom track)
               

               Alignm length:
               161
               

               Alignm identity:
               130
               

               Alignm E-value:
               2e-34
               

               Alignm gaps (pig, cow):
               121, 53
               

               Conread position:
               3-169
               

               Cow position:
               chr5:41953061-41952897 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               123
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               106, 53
               

               Conread position:
               3-170
               

               Cow position:
               chr5:48238350-48238178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               173
               

               Alignm identity:
               131
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               3-173
               

               Cow position:
               chr5:46754470-46754645 (view UCSC Genome Browser custom track)
               

               Alignm length:
               177
               

               Alignm identity:
               132
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               49, 117
               

               Conread position:
               3-209
               

               Cow position:
               chr5:23666519-23666308 (view UCSC Genome Browser custom track)
               

               Alignm length:
               213
               

               Alignm identity:
               152
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               18, 57
               

               Conread position:
               3-216
               

               Cow position:
               chr5:50729238-50729457 (view UCSC Genome Browser custom track)
               

               Alignm length:
               220
               

               Alignm identity:
               174
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               3-227
               

               Cow position:
               chr5:2427984-2427754 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               161
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               53, 0
               

               Conread position:
               3-230
               

               Cow position:
               chr5:46104197-46103969 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               178
               

               Alignm E-value:
               4.99983e-42
               

               Alignm gaps (pig, cow):
               20, 140
               

               Conread position:
               3-231
               

               Cow position:
               chr5:39675700-39675480 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               170
               

               Alignm E-value:
               1e-37
               

               Alignm gaps (pig, cow):
               13, 0
               

               Conread position:
               3-250
               

               Cow position:
               chr5:34678638-34678884 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               182
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               51, 39
               

               Conread position:
               3-259
               

               Cow position:
               chr5:12640486-12640236 (view UCSC Genome Browser custom track)
               

               Alignm length:
               262
               

               Alignm identity:
               176
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               129, 60
               

               Conread position:
               3-259
               

               Cow position:
               chr5:66064871-66065127 (view UCSC Genome Browser custom track)
               

               Alignm length:
               261
               

               Alignm identity:
               181
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               54, 226
               

               Conread position:
               3-261
               

               Cow position:
               chr5:22108586-22108325 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               179
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               47, 6
               

               Conread position:
               3-262
               

               Cow position:
               chr5:73222437-73222690 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               188
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               10, 35
               

               Conread position:
               3-266
               

               Cow position:
               chr5:38831252-38830987 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               191
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               13, 121
               

               Conread position:
               3-271
               

               Cow position:
               chr5:19978143-19977870 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               53, 160
               

               Conread position:
               3-271
               

               Cow position:
               chr5:43984850-43985118 (view UCSC Genome Browser custom track)
               

               Alignm length:
               273
               

               Alignm identity:
               180
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               52, 121
               

               Conread position:
               3-276
               

               Cow position:
               chr5:70960405-70960119 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               195
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               53, 265
               

               Conread position:
               3-285
               

               Cow position:
               chr5:59443508-59443222 (view UCSC Genome Browser custom track)
               

               Alignm length:
               292
               

               Alignm identity:
               229
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 61
               

               Conread position:
               3-302
               

               Cow position:
               chr5:21944124-21944441 (view UCSC Genome Browser custom track)
               

               Alignm length:
               318
               

               Alignm identity:
               238
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 0
               

               Conread position:
               3-323
               

               Cow position:
               chr5:3281125-3280808 (view UCSC Genome Browser custom track)
               

               Alignm length:
               322
               

               Alignm identity:
               218
               

               Alignm E-value:
               9.99995e-41
               

               Alignm gaps (pig, cow):
               132, 60
               

               Conread position:
               3-326
               

               Cow position:
               chr5:26595360-26595036 (view UCSC Genome Browser custom track)
               

               Alignm length:
               330
               

               Alignm identity:
               226
               

               Alignm E-value:
               4e-39
               

               Alignm gaps (pig, cow):
               142, 47
               

               Conread position:
               3-336
               

               Cow position:
               chr5:13691833-13691490 (view UCSC Genome Browser custom track)
               

               Alignm length:
               349
               

               Alignm identity:
               255
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 244
               

               Conread position:
               3-351
               

               Cow position:
               chr5:26647461-26647816 (view UCSC Genome Browser custom track)
               

               Alignm length:
               360
               

               Alignm identity:
               242
               

               Alignm E-value:
               3e-37
               

               Alignm gaps (pig, cow):
               54, 102
               

               Conread position:
               3-360
               

               Cow position:
               chr5:25231272-25230911 (view UCSC Genome Browser custom track)
               

               Alignm length:
               373
               

               Alignm identity:
               279
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               10, 206
               

               Conread position:
               3-365
               

               Cow position:
               chr5:18276221-18276587 (view UCSC Genome Browser custom track)
               

               Alignm length:
               374
               

               Alignm identity:
               247
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               49, 235
               

               Conread position:
               3-397
               

               Cow position:
               chr5:19278950-19278569 (view UCSC Genome Browser custom track)
               

               Alignm length:
               398
               

               Alignm identity:
               278
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               32, 101
               

               Conread position:
               3-398
               

               Cow position:
               chr5:29771261-29771667 (view UCSC Genome Browser custom track)
               

               Alignm length:
               412
               

               Alignm identity:
               288
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 43
               

               Conread position:
               3-399
               

               Cow position:
               chr5:27103050-27102654 (view UCSC Genome Browser custom track)
               

               Alignm length:
               405
               

               Alignm identity:
               271
               

               Alignm E-value:
               1.96182e-44
               

               Alignm gaps (pig, cow):
               15, 130
               

               Conread position:
               3-399
               

               Cow position:
               chr5:28224198-28224592 (view UCSC Genome Browser custom track)
               

               Alignm length:
               399
               

               Alignm identity:
               280
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               171, 72
               

               Conread position:
               3-401
               

               Cow position:
               chr5:47317225-47316833 (view UCSC Genome Browser custom track)
               

               Alignm length:
               400
               

               Alignm identity:
               286
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               379, 53
               

               Conread position:
               3-408
               

               Cow position:
               chr5:9894384-9893977 (view UCSC Genome Browser custom track)
               

               Alignm length:
               414
               

               Alignm identity:
               312
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 96
               

               Conread position:
               3-414
               

               Cow position:
               chr5:17999753-17999337 (view UCSC Genome Browser custom track)
               

               Alignm length:
               423
               

               Alignm identity:
               296
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               48, 260
               

               Conread position:
               3-414
               

               Cow position:
               chr5:43858685-43858265 (view UCSC Genome Browser custom track)
               

               Alignm length:
               429
               

               Alignm identity:
               302
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               53, 96
               

               Conread position:
               3-418
               

               Cow position:
               chr5:39299271-39299693 (view UCSC Genome Browser custom track)
               

               Alignm length:
               428
               

               Alignm identity:
               293
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               121, 212
               

               Conread position:
               3-419
               

               Cow position:
               chr5:21617198-21617619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               424
               

               Alignm identity:
               324
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               50, 187
               

               Conread position:
               3-423
               

               Cow position:
               chr5:29680821-29681257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               447
               

               Alignm identity:
               316
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               54, 61
               

               Conread position:
               3-512
               

               Cow position:
               chr5:53855447-53855955 (view UCSC Genome Browser custom track)
               

               Alignm length:
               526
               

               Alignm identity:
               356
               

               Alignm E-value:
               0
               

               Alignm gaps (pig, cow):
               47, 64
               

               Conread position:
               4-185
               

               Cow position:
               chr5:28035446-28035636 (view UCSC Genome Browser custom track)
               

               Alignm length:
               191
               

               Alignm identity:
               147
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               21, 0
               

               Conread position:
               4-255
               

               Cow position:
               chr5:51076901-51076651 (view UCSC Genome Browser custom track)
               

               Alignm length:
               256
               

               Alignm identity:
               189
               

               Alignm E-value:
               9.99967e-42
               

               Alignm gaps (pig, cow):
               49, 170
               

               Conread position:
               4-514
               

               Cow position:
               chr5:2977573-2978090 (view UCSC Genome Browser custom track)
               

               Alignm length:
               527
               

               Alignm identity:
               320
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               10, 233
               

               Conread position:
               5-167
               

               Cow position:
               chr5:56568973-56569139 (view UCSC Genome Browser custom track)
               

               Alignm length:
               167
               

               Alignm identity:
               122
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               133, 0
               

               Conread position:
               5-170
               

               Cow position:
               chr5:50573501-50573668 (view UCSC Genome Browser custom track)
               

               Alignm length:
               168
               

               Alignm identity:
               126
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               46, 0
               

               Conread position:
               5-175
               

               Cow position:
               chr5:6454895-6454725 (view UCSC Genome Browser custom track)
               

               Alignm length:
               174
               

               Alignm identity:
               125
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               9, 121
               

               Conread position:
               5-195
               

               Cow position:
               chr5:351088-350891 (view UCSC Genome Browser custom track)
               

               Alignm length:
               198
               

               Alignm identity:
               140
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-201
               

               Cow position:
               chr5:6616311-6616514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               141
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-201
               

               Cow position:
               chr5:42871586-42871789 (view UCSC Genome Browser custom track)
               

               Alignm length:
               204
               

               Alignm identity:
               140
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-204
               

               Cow position:
               chr5:60897101-60896895 (view UCSC Genome Browser custom track)
               

               Alignm length:
               207
               

               Alignm identity:
               145
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-213
               

               Cow position:
               chr5:49103594-49103809 (view UCSC Genome Browser custom track)
               

               Alignm length:
               216
               

               Alignm identity:
               150
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-216
               

               Cow position:
               chr5:4962623-4962409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               150
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-216
               

               Cow position:
               chr5:21188700-21188914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               215
               

               Alignm identity:
               147
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               5-217
               

               Cow position:
               chr5:11631216-11630991 (view UCSC Genome Browser custom track)
               

               Alignm length:
               226
               

               Alignm identity:
               157
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-225
               

               Cow position:
               chr5:50982110-50982336 (view UCSC Genome Browser custom track)
               

               Alignm length:
               227
               

               Alignm identity:
               151
               

               Alignm E-value:
               2e-21
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-226
               

               Cow position:
               chr5:19283741-19283513 (view UCSC Genome Browser custom track)
               

               Alignm length:
               229
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-227
               

               Cow position:
               chr5:11675986-11675757 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-227
               

               Cow position:
               chr5:46721223-46721452 (view UCSC Genome Browser custom track)
               

               Alignm length:
               231
               

               Alignm identity:
               163
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               5-227
               

               Cow position:
               chr5:52239498-52239269 (view UCSC Genome Browser custom track)
               

               Alignm length:
               230
               

               Alignm identity:
               157
               

               Alignm E-value:
               7e-25
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-229
               

               Cow position:
               chr5:6536215-6535984 (view UCSC Genome Browser custom track)
               

               Alignm length:
               233
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               5-230
               

               Cow position:
               chr5:2330714-2330481 (view UCSC Genome Browser custom track)
               

               Alignm length:
               234
               

               Alignm identity:
               159
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-233
               

               Cow position:
               chr5:61762997-61762763 (view UCSC Genome Browser custom track)
               

               Alignm length:
               235
               

               Alignm identity:
               131
               

               Alignm E-value:
               2e-22
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr5:1128792-1128554 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               2e-24
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr5:5924214-5923976 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               165
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               10, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr5:11639264-11639500 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 164
               

               Conread position:
               5-236
               

               Cow position:
               chr5:20971334-20971098 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               166
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 87
               

               Conread position:
               5-236
               

               Cow position:
               chr5:37084442-37084678 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               161
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               9, 212
               

               Conread position:
               5-236
               

               Cow position:
               chr5:45881443-45881205 (view UCSC Genome Browser custom track)
               

               Alignm length:
               241
               

               Alignm identity:
               165
               

               Alignm E-value:
               7e-24
               

               Alignm gaps (pig, cow):
               9, 214
               

               Conread position:
               5-236
               

               Cow position:
               chr5:56879683-56879921 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               162
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr5:58202301-58202539 (view UCSC Genome Browser custom track)
               

               Alignm length:
               239
               

               Alignm identity:
               164
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-236
               

               Cow position:
               chr5:60376471-60376240 (view UCSC Genome Browser custom track)
               

               Alignm length:
               238
               

               Alignm identity:
               162
               

               Alignm E-value:
               5e-22
               

               Alignm gaps (pig, cow):
               9, 32
               

               Conread position:
               5-249
               

               Cow position:
               chr5:36369223-36368972 (view UCSC Genome Browser custom track)
               

               Alignm length:
               252
               

               Alignm identity:
               141
               

               Alignm E-value:
               6e-23
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               5-252
               

               Cow position:
               chr5:19890834-19891088 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               173
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-252
               

               Cow position:
               chr5:31682005-31682257 (view UCSC Genome Browser custom track)
               

               Alignm length:
               255
               

               Alignm identity:
               172
               

               Alignm E-value:
               2e-25
               

               Alignm gaps (pig, cow):
               9, 92
               

               Conread position:
               5-255
               

               Cow position:
               chr5:13453473-13453216 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               174
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-255
               

               Cow position:
               chr5:18118207-18117950 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               178
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-255
               

               Cow position:
               chr5:58441284-58441541 (view UCSC Genome Browser custom track)
               

               Alignm length:
               258
               

               Alignm identity:
               175
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-259
               

               Cow position:
               chr5:248072-248334 (view UCSC Genome Browser custom track)
               

               Alignm length:
               263
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-261
               

               Cow position:
               chr5:472881-472619 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:4537943-4538204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               9, 242
               

               Conread position:
               5-261
               

               Cow position:
               chr5:11129768-11130030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:11763578-11763840 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               177
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:29240213-29240475 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               179
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:30274321-30274059 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:31740466-31740204 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:33870074-33869812 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               180
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-261
               

               Cow position:
               chr5:40864768-40865030 (view UCSC Genome Browser custom track)
               

               Alignm length:
               264
               

               Alignm identity:
               178
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-262
               

               Cow position:
               chr5:59473765-59474029 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               177
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 0
               

               Conread position:
               5-264
               

               Cow position:
               chr5:4753365-4753100 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               178
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-264
               

               Cow position:
               chr5:10525061-10524796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               181
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-264
               

               Cow position:
               chr5:29635198-29635463 (view UCSC Genome Browser custom track)
               

               Alignm length:
               267
               

               Alignm identity:
               180
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-265
               

               Cow position:
               chr5:10772061-10771798 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               183
               

               Alignm E-value:
               6e-34
               

               Alignm gaps (pig, cow):
               9, 254
               

               Conread position:
               5-266
               

               Cow position:
               chr5:6584761-6584499 (view UCSC Genome Browser custom track)
               

               Alignm length:
               265
               

               Alignm identity:
               175
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 219
               

               Conread position:
               5-266
               

               Cow position:
               chr5:15760620-15760356 (view UCSC Genome Browser custom track)
               

               Alignm length:
               268
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               11, 211
               

               Conread position:
               5-266
               

               Cow position:
               chr5:18072148-18071883 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 212
               

               Conread position:
               5-266
               

               Cow position:
               chr5:26138676-26138409 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-266
               

               Cow position:
               chr5:29255445-29255178 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               10, 257
               

               Conread position:
               5-266
               

               Cow position:
               chr5:34249361-34249626 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 240
               

               Conread position:
               5-266
               

               Cow position:
               chr5:34509418-34509151 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               186
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               9, 257
               

               Conread position:
               5-266
               

               Cow position:
               chr5:50622477-50622212 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               182
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 146
               

               Conread position:
               5-266
               

               Cow position:
               chr5:53201376-53201109 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               181
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-266
               

               Cow position:
               chr5:55685306-55685573 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               184
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-266
               

               Cow position:
               chr5:75725810-75725545 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               185
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               10, 52
               

               Conread position:
               5-267
               

               Cow position:
               chr5:446263-446533 (view UCSC Genome Browser custom track)
               

               Alignm length:
               271
               

               Alignm identity:
               183
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               11, 0
               

               Conread position:
               5-267
               

               Cow position:
               chr5:1058797-1058534 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 181
               

               Conread position:
               5-267
               

               Cow position:
               chr5:4571313-4571579 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               184
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               9, 240
               

               Conread position:
               5-267
               

               Cow position:
               chr5:24181060-24180796 (view UCSC Genome Browser custom track)
               

               Alignm length:
               269
               

               Alignm identity:
               175
               

               Alignm E-value:
               5e-21
               

               Alignm gaps (pig, cow):
               9, 176
               

               Conread position:
               5-267
               

               Cow position:
               chr5:31710061-31710326 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               183
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 224
               

               Conread position:
               5-267
               

               Cow position:
               chr5:52243671-52243407 (view UCSC Genome Browser custom track)
               

               Alignm length:
               270
               

               Alignm identity:
               185
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 212
               

               Conread position:
               5-272
               

               Cow position:
               chr5:51915356-51915629 (view UCSC Genome Browser custom track)
               

               Alignm length:
               276
               

               Alignm identity:
               189
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               9, 57
               

               Conread position:
               5-275
               

               Cow position:
               chr5:1641641-1641917 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               183
               

               Alignm E-value:
               8e-26
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:12324805-12324529 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:22761813-22761537 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               185
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:30258962-30258686 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:37626615-37626887 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               190
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 121
               

               Conread position:
               5-275
               

               Cow position:
               chr5:37801470-37801746 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:43031177-43030901 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               183
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:44616892-44616616 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 257
               

               Conread position:
               5-275
               

               Cow position:
               chr5:44760887-44761163 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               186
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:46845304-46845028 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               189
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:49535034-49535310 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               188
               

               Alignm E-value:
               1e-30
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:50674934-50674658 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-275
               

               Cow position:
               chr5:58323937-58324213 (view UCSC Genome Browser custom track)
               

               Alignm length:
               278
               

               Alignm identity:
               187
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-278
               

               Cow position:
               chr5:10536296-10536572 (view UCSC Genome Browser custom track)
               

               Alignm length:
               282
               

               Alignm identity:
               190
               

               Alignm E-value:
               3e-26
               

               Alignm gaps (pig, cow):
               9, 186
               

               Conread position:
               5-285
               

               Cow position:
               chr5:29223787-29224073 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               194
               

               Alignm E-value:
               2e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-285
               

               Cow position:
               chr5:73139829-73139543 (view UCSC Genome Browser custom track)
               

               Alignm length:
               288
               

               Alignm identity:
               191
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:366241-365940 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 253
               

               Conread position:
               5-300
               

               Cow position:
               chr5:2279007-2278706 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:4715993-4715692 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:6735020-6734719 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:7007035-7006729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               308
               

               Alignm identity:
               202
               

               Alignm E-value:
               9e-27
               

               Alignm gaps (pig, cow):
               9, 261
               

               Conread position:
               5-300
               

               Cow position:
               chr5:9056215-9055914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:9164887-9164586 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:10250504-10250203 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:10482628-10482327 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:11618398-11618097 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               3e-28
               

               Alignm gaps (pig, cow):
               11, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:11988713-11988412 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               202
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:12212429-12212128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:13271282-13271583 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               11, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:13774380-13774079 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               198
               

               Alignm E-value:
               1e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:14278914-14279215 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               201
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:28013626-28013927 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               10, 253
               

               Conread position:
               5-300
               

               Cow position:
               chr5:29633215-29632914 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:30158166-30158467 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:31261795-31262096 (view UCSC Genome Browser custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               201
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 187
               

               Conread position:
               5-300
               

               Cow position:
               chr5:35280836-35281137 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:35455377-35455076 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:35543428-35543729 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:47055180-47054879 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               197
               

               Alignm E-value:
               3e-27
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:48227562-48227863 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:50582549-50582246 (view UCSC Genome Browser custom track)
               

               Alignm length:
               306
               

               Alignm identity:
               205
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 188
               

               Conread position:
               5-300
               

               Cow position:
               chr5:50979547-50979845 (view UCSC Genome Browser custom track)
               

               Alignm length:
               302
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-29
               

               Alignm gaps (pig, cow):
               9, 121
               

               Conread position:
               5-300
               

               Cow position:
               chr5:54360429-54360128 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               202
               

               Alignm E-value:
               5e-32
               

               Alignm gaps (pig, cow):
               10, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:54678815-54678514 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               203
               

               Alignm E-value:
               6e-33
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:57002676-57002375 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               199
               

               Alignm E-value:
               4e-29
               

               Alignm gaps (pig, cow):
               9, 261
               

               Conread position:
               5-300
               

               Cow position:
               chr5:58037518-58037217 (view UCSC Genome Browser custom track)
               

               Alignm length:
               303
               

               Alignm identity:
               200
               

               Alignm E-value:
               4e-30
               

               Alignm gaps (pig, cow):
               9, 256
               

               Conread position:
               5-300
               

               Cow position:
               chr5:59518247-59517944 (view UCSC Genome Browser custom track)
               

               Alignm length:
               305
               

               Alignm identity:
               204
               

               Alignm E-value:
               5e-31
               

               Alignm gaps (pig, cow):
               9, 258
               
UCSC Genome Browser
               Conread position:
               5-300
               

               Cow position:
               chr5:64650872-64651174 (view  custom track)
               

               Alignm length:
               304
               

               Alignm identity:
               200
               

               Alignm E-value:
               1e-28
               

               Alignm gaps (pig, cow):
               9, 257
               
UCSC Genome Browser
               
               
               
Conread position: 5-300

               
               
               
Cow position: chr5:68273080-68272779 (view  custom track)

               
               
               
Alignm length: 303

               
               
               
Alignm identity: 200

               
               
               
Alignm E-value: 4e-30

               
               
               
Alignm gaps (pig, cow): 9, 256
UCSC Genome Browser
               
               
               
Conread position: 5-305

               
               
               
Cow position: chr5:2395341-2395646 (view  custom track)

               
               
               
Alignm length: 308

               
               
               
Alignm identity: 210

               
               
               
Alignm E-value: 3e-36

               
               
               
Alignm gaps (pig, cow): 9, 208

               
               
               Conread position:5-305
               
               
               Cow position:chr5:3453715-3453409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:4599988-4599684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 240

               
               
               Conread position:5-305
               
               
               Cow position:chr5:15530114-15529811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 250

               
               
               Conread position:5-305
               
               
               Cow position:chr5:18514238-18513932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:24085933-24085631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:204
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):45, 95

               
               
               Conread position:5-305
               
               
               Cow position:chr5:24633843-24634149 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:26074925-26074619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:27933513-27933819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:202
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:43349939-43349632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-305
               
               
               Cow position:chr5:46587296-46586992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 240

               
               
               Conread position:5-305
               
               
               Cow position:chr5:49970209-49969903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:52822440-52822134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 253

               
               
               Conread position:5-305
               
               
               Cow position:chr5:58047697-58048003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-305
               
               
               Cow position:chr5:58329800-58330105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 201

               
               
               Conread position:5-305
               
               
               Cow position:chr5:61502897-61503204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:204
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-311
               
               
               Cow position:chr5:13127759-13127447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:207
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-311
               
               
               Cow position:chr5:37271395-37271707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-312
               
               
               Cow position:chr5:23881562-23881250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:205
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 240

               
               
               Conread position:5-313
               
               
               Cow position:chr5:630949-631263 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:3065899-3065585 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:5235518-5235203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 257

               
               
               Conread position:5-313
               
               
               Cow position:chr5:13630681-13630995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:24918248-24918559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):10, 231

               
               
               Conread position:5-313
               
               
               Cow position:chr5:29893731-29894045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:31433313-31433626 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:37380854-37381168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:42283932-42284246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 201

               
               
               Conread position:5-313
               
               
               Cow position:chr5:45837588-45837902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr5:48497033-48497346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:210
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):9, 252

               
               
               Conread position:5-314
               
               
               Cow position:chr5:1690655-1690970 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:262084-261767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:1163767-1164084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:3228994-3228677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:6694237-6693920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:12726796-12727113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:212
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:18716387-18716076 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):10, 62

               
               
               Conread position:5-316
               
               
               Cow position:chr5:20341562-20341247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:211
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 68

               
               
               Conread position:5-316
               
               
               Cow position:chr5:34682596-34682279 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:35031372-35031689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:37609240-37608925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:205
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):11, 240

               
               
               Conread position:5-316
               
               
               Cow position:chr5:39361362-39361045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:40130054-40129737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:41371078-41371395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-316
               
               
               Cow position:chr5:44532594-44532277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:45025392-45025075 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:46628448-46628765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:46792725-46793040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 38

               
               
               Conread position:5-316
               
               
               Cow position:chr5:46879031-46879348 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:47564548-47564231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:54929490-54929173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:57335595-57335278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr5:57879636-57879946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):10, 96

               
               
               Conread position:5-316
               
               
               Cow position:chr5:59135188-59135503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):9, 216

               
               
               Conread position:5-316
               
               
               Cow position:chr5:68377360-68377677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 183

               
               
               Conread position:5-318
               
               
               Cow position:chr5:52226502-52226185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):9, 254

               
               
               Conread position:5-321
               
               
               Cow position:chr5:5106992-5107318 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 261

               
               
               Conread position:5-321
               
               
               Cow position:chr5:35174560-35174238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):9, 197

               
               
               Conread position:5-321
               
               
               Cow position:chr5:35498276-35498598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-321
               
               
               Cow position:chr5:39173443-39173120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-321
               
               
               Cow position:chr5:42508210-42508532 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-321
               
               
               Cow position:chr5:48374432-48374753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):10, 230

               
               
               Conread position:5-321
               
               
               Cow position:chr5:49286717-49286397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):9, 67

               
               
               Conread position:5-321
               
               
               Cow position:chr5:58516360-58516040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 240

               
               
               Conread position:5-324
               
               
               Cow position:chr5:709382-709059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:213
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 76

               
               
               Conread position:5-347
               
               
               Cow position:chr5:4433887-4433542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 186

               
               
               Conread position:5-347
               
               
               Cow position:chr5:41951337-41951008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):251, 13

               
               
               Conread position:5-351
               
               
               Cow position:chr5:27046676-27047028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:229
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-371
               
               
               Cow position:chr5:46667838-46668206 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):9, 34

               
               
               Conread position:5-383
               
               
               Cow position:chr5:45965908-45965526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 108

               
               
               Conread position:5-394
               
               
               Cow position:chr5:60715610-60715233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:5-436
               
               
               Cow position:chr5:58099944-58099510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:442
               
               
               Alignm identity:278
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 212

               
               
               Conread position:5-476
               
               
               Cow position:chr5:44276364-44276840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:294
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 253

               
               
               Conread position:5-513
               
               
               Cow position:chr5:54927158-54926646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):10, 261

               
               
               Conread position:5-527
               
               
               Cow position:chr5:51165542-51165011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:539
               
               
               Alignm identity:329
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 255

               
               
               Conread position:5-556
               
               
               Cow position:chr5:9867922-9868489 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:575
               
               
               Alignm identity:357
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 8

               
               
               Conread position:6-158
               
               
               Cow position:chr5:17384355-17384193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):46, 0

               
               
               Conread position:6-174
               
               
               Cow position:chr5:37091029-37090855 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):62, 58

               
               
               Conread position:6-184
               
               
               Cow position:chr5:25935700-25935877 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):129, 41

               
               
               Conread position:6-207
               
               
               Cow position:chr5:40116008-40115800 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-215
               
               
               Cow position:chr5:26403752-26403542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:148
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 109

               
               
               Conread position:6-223
               
               
               Cow position:chr5:54427853-54427637 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):111, 52

               
               
               Conread position:6-235
               
               
               Cow position:chr5:54869163-54869395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 105

               
               
               Conread position:6-236
               
               
               Cow position:chr5:61656352-61656582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):49, 167

               
               
               Conread position:6-261
               
               
               Cow position:chr5:27501207-27500946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:177
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-267
               
               
               Cow position:chr5:22565383-22565645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 109

               
               
               Conread position:6-275
               
               
               Cow position:chr5:8159734-8159464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:191
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):46, 56

               
               
               Conread position:6-275
               
               
               Cow position:chr5:72857647-72857922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-299
               
               
               Cow position:chr5:50975633-50975942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 49

               
               
               Conread position:6-305
               
               
               Cow position:chr5:22546602-22546908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):44, 256

               
               
               Conread position:6-311
               
               
               Cow position:chr5:37430746-37430435 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:207
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-321
               
               
               Cow position:chr5:14746691-14747007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 254

               
               
               Conread position:6-321
               
               
               Cow position:chr5:35807204-35806883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:212
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-330
               
               
               Cow position:chr5:11786625-11786951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:186
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):8, 181

               
               
               Conread position:6-335
               
               
               Cow position:chr5:41531343-41531008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:233
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):45, 256

               
               
               Conread position:6-336
               
               
               Cow position:chr5:32140959-32140631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 35

               
               
               Conread position:6-349
               
               
               Cow position:chr5:50637577-50637911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 30

               
               
               Conread position:6-350
               
               
               Cow position:chr5:33414659-33414320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):141, 52

               
               
               Conread position:6-351
               
               
               Cow position:chr5:26370453-26370775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 44

               
               
               Conread position:6-384
               
               
               Cow position:chr5:46510122-46509740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 181

               
               
               Conread position:6-412
               
               
               Cow position:chr5:55756696-55756260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:438
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):54, 395

               
               
               Conread position:6-488
               
               
               Cow position:chr5:31640173-31640657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:498
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 168

               
               
               Conread position:6-500
               
               
               Cow position:chr5:39447786-39447301 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:359
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 194

               
               
               Conread position:7-167
               
               
               Cow position:chr5:34565417-34565257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):11, 23

               
               
               Conread position:7-228
               
               
               Cow position:chr5:63917664-63917441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:7-259
               
               
               Cow position:chr5:36793783-36794034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):44, 142

               
               
               Conread position:7-300
               
               
               Cow position:chr5:27183426-27183725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:202
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):7, 254

               
               
               Conread position:7-313
               
               
               Cow position:chr5:1027954-1027640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:227
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):26, 9

               
               
               Conread position:7-350
               
               
               Cow position:chr5:51309714-51310062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):55, 253

               
               
               Conread position:7-364
               
               
               Cow position:chr5:12873491-12873857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:258
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):50, 81

               
               
               Conread position:7-366
               
               
               Cow position:chr5:48868000-48867646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:243
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):50, 31

               
               
               Conread position:7-392
               
               
               Cow position:chr5:30302645-30303024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:300
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 57

               
               
               Conread position:7-392
               
               
               Cow position:chr5:50821535-50821916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 100

               
               
               Conread position:7-398
               
               
               Cow position:chr5:72564505-72564903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 136

               
               
               Conread position:8-154
               
               
               Cow position:chr5:63235145-63235006 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):49, 9

               
               
               Conread position:8-236
               
               
               Cow position:chr5:57987251-57987485 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:162
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:8-280
               
               
               Cow position:chr5:42676982-42677254 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):49, 124

               
               
               Conread position:8-360
               
               
               Cow position:chr5:28330584-28330242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 114

               
               
               Conread position:8-518
               
               
               Cow position:chr5:3204583-3205097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:529
               
               
               Alignm identity:347
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):49, 85

               
               
               Conread position:9-124
               
               
               Cow position:chr5:12316063-12316179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:93
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:9-166
               
               
               Cow position:chr5:41936050-41935890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:9-169
               
               
               Cow position:chr5:72701261-72701100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:120
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):47, 134

               
               
               Conread position:9-170
               
               
               Cow position:chr5:63967897-63967736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:132
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 76

               
               
               Conread position:9-175
               
               
               Cow position:chr5:57787126-57787290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:169
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):48, 110

               
               
               Conread position:9-257
               
               
               Cow position:chr5:5035762-5035515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:175
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):48, 114

               
               
               Conread position:9-257
               
               
               Cow position:chr5:16668324-16668559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:178
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):9, 61

               
               
               Conread position:9-258
               
               
               Cow position:chr5:16184838-16185088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 112

               
               
               Conread position:9-263
               
               
               Cow position:chr5:48224828-48224579 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:188
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):18, 168

               
               
               Conread position:9-285
               
               
               Cow position:chr5:7763822-7764100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):62, 55

               
               
               Conread position:9-291
               
               
               Cow position:chr5:34288721-34288436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 94

               
               
               Conread position:9-299
               
               
               Cow position:chr5:26790698-26790415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:214
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):167, 40

               
               
               Conread position:9-309
               
               
               Cow position:chr5:59759139-59759425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):120, 47

               
               
               Conread position:9-312
               
               
               Cow position:chr5:41523044-41522747 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 59

               
               
               Conread position:9-315
               
               
               Cow position:chr5:27403495-27403173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:9-330
               
               
               Cow position:chr5:30486997-30487313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 54

               
               
               Conread position:9-349
               
               
               Cow position:chr5:22839725-22839383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:230
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):9, 161

               
               
               Conread position:9-351
               
               
               Cow position:chr5:10922929-10923275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:226
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):47, 135

               
               
               Conread position:9-351
               
               
               Cow position:chr5:27179403-27179749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:253
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 113

               
               
               Conread position:9-351
               
               
               Cow position:chr5:34528310-34528639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 187

               
               
               Conread position:9-351
               
               
               Cow position:chr5:49884421-49884079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:225
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 14

               
               
               Conread position:9-360
               
               
               Cow position:chr5:61488362-61488011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):118, 57

               
               
               Conread position:9-364
               
               
               Cow position:chr5:37190347-37189991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 53

               
               
               Conread position:9-367
               
               
               Cow position:chr5:65601209-65601566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 210

               
               
               Conread position:9-382
               
               
               Cow position:chr5:52905742-52905374 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:245
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):53, 48

               
               
               Conread position:9-384
               
               
               Cow position:chr5:26377918-26377543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 163

               
               
               Conread position:9-391
               
               
               Cow position:chr5:27172209-27171861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:263
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):47, 7

               
               
               Conread position:9-393
               
               
               Cow position:chr5:24348860-24349240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 117

               
               
               Conread position:9-398
               
               
               Cow position:chr5:44796969-44796594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):162, 111

               
               
               Conread position:9-400
               
               
               Cow position:chr5:44054289-44053914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 152

               
               
               Conread position:9-406
               
               
               Cow position:chr5:66338833-66339220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 55

               
               
               Conread position:9-413
               
               
               Cow position:chr5:66366280-66366669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):238, 107

               
               
               Conread position:9-414
               
               
               Cow position:chr5:66257391-66257791 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 73

               
               
               Conread position:9-415
               
               
               Cow position:chr5:64524133-64523706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:431
               
               
               Alignm identity:305
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 72

               
               
               Conread position:9-421
               
               
               Cow position:chr5:50533635-50533226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:420
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 112

               
               
               Conread position:9-509
               
               
               Cow position:chr5:59326079-59325586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:512
               
               
               Alignm identity:336
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):168, 122

               
               
               Conread position:10-264
               
               
               Cow position:chr5:26561903-26562161 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:190
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):44, 7

               
               
               Conread position:10-322
               
               
               Cow position:chr5:65593632-65593935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:220
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:10-338
               
               
               Cow position:chr5:9073985-9073653 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 179

               
               
               Conread position:10-358
               
               
               Cow position:chr5:32697060-32696724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 6

               
               
               Conread position:10-360
               
               
               Cow position:chr5:9090273-9089922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 222

               
               
               Conread position:10-395
               
               
               Cow position:chr5:4218626-4218993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 114

               
               
               Conread position:10-522
               
               
               Cow position:chr5:44994286-44993793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:365
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):233, 7

               
               
               Conread position:11-322
               
               
               Cow position:chr5:64823562-64823248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 5

               
               
               Conread position:11-397
               
               
               Cow position:chr5:29353377-29352989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):131, 5

               
               
               Conread position:11-399
               
               
               Cow position:chr5:39258291-39258645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:270
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):32, 5

               
               
               Conread position:12-172
               
               
               Cow position:chr5:24959203-24959039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 126

               
               
               Conread position:12-230
               
               
               Cow position:chr5:48178923-48178706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:169
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):45, 5

               
               
               Conread position:12-230
               
               
               Cow position:chr5:63388547-63388765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:182
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 6

               
               
               Conread position:12-258
               
               
               Cow position:chr5:40595249-40595011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:183
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):44, 5

               
               
               Conread position:12-275
               
               
               Cow position:chr5:49558911-49559183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 230

               
               
               Conread position:12-287
               
               
               Cow position:chr5:41410668-41410393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):45, 227

               
               
               Conread position:12-297
               
               
               Cow position:chr5:2288807-2288513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:211
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):145, 107

               
               
               Conread position:12-351
               
               
               Cow position:chr5:61600164-61600499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 239

               
               
               Conread position:12-399
               
               
               Cow position:chr5:51502764-51503143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:260
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):44, 128

               
               
               Conread position:12-410
               
               
               Cow position:chr5:28302988-28302594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:407
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 152

               
               
               Conread position:13-204
               
               
               Cow position:chr5:29741783-29741586 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:13-227
               
               
               Cow position:chr5:35724710-35724492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 177

               
               
               Conread position:13-236
               
               
               Cow position:chr5:37782361-37782132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:154
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:13-249
               
               
               Cow position:chr5:40357118-40356875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:189
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 85

               
               
               Conread position:13-262
               
               
               Cow position:chr5:36679687-36679433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 247

               
               
               Conread position:13-264
               
               
               Cow position:chr5:23354488-23354740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:178
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):43, 202

               
               
               Conread position:13-271
               
               
               Cow position:chr5:47750700-47750965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 245

               
               
               Conread position:13-300
               
               
               Cow position:chr5:29823296-29823589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:195
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):38, 248

               
               
               Conread position:13-300
               
               
               Cow position:chr5:47903792-47903500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:194
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 247

               
               
               Conread position:13-305
               
               
               Cow position:chr5:23604978-23605274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:195
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):37, 246

               
               
               Conread position:13-321
               
               
               Cow position:chr5:56931109-56930795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:206
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):50, 58

               
               
               Conread position:13-369
               
               
               Cow position:chr5:41609058-41609394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):272, 43

               
               
               Conread position:13-383
               
               
               Cow position:chr5:20270533-20270908 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:245
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 248

               
               
               Conread position:13-464
               
               
               Cow position:chr5:35826343-35826808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:341
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 256

               
               
               Conread position:14-249
               
               
               Cow position:chr5:6575829-6575601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):154, 24

               
               
               Conread position:14-316
               
               
               Cow position:chr5:38663499-38663804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:202
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):36, 86

               
               
               Conread position:15-257
               
               
               Cow position:chr5:27690304-27690058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:189
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):35, 162

               
               
               Conread position:15-275
               
               
               Cow position:chr5:54363824-54364089 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 245

               
               
               Conread position:15-488
               
               
               Cow position:chr5:46323057-46322574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 131

               
               
               Conread position:16-209
               
               
               Cow position:chr5:14703212-14703016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 176

               
               
               Conread position:16-219
               
               
               Cow position:chr5:22102558-22102346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:155
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):15, 0

               
               
               Conread position:16-500
               
               
               Cow position:chr5:11229916-11229447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:495
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 11

               
               
               Conread position:17-164
               
               
               Cow position:chr5:18842368-18842518 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):110, 48

               
               
               Conread position:17-169
               
               
               Cow position:chr5:24933964-24934120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:17-170
               
               
               Cow position:chr5:5979089-5979242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):35, 14

               
               
               Conread position:17-172
               
               
               Cow position:chr5:53701706-53701547 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:17-198
               
               
               Cow position:chr5:35683828-35684014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:109
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-202
               
               
               Cow position:chr5:39419026-39418840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:145
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):36, 117

               
               
               Conread position:17-204
               
               
               Cow position:chr5:62261626-62261811 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:141
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):14, 110

               
               
               Conread position:17-206
               
               
               Cow position:chr5:7740550-7740355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:142
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):14, 191

               
               
               Conread position:17-210
               
               
               Cow position:chr5:33537645-33537840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:160
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):14, 160

               
               
               Conread position:17-229
               
               
               Cow position:chr5:31786010-31786213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):123, 0

               
               
               Conread position:17-242
               
               
               Cow position:chr5:23179838-23180055 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:162
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):42, 0

               
               
               Conread position:17-250
               
               
               Cow position:chr5:9498146-9498379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):39, 101

               
               
               Conread position:17-252
               
               
               Cow position:chr5:26099611-26099385 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:175
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:17-256
               
               
               Cow position:chr5:29504869-29505109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):118, 39

               
               
               Conread position:17-263
               
               
               Cow position:chr5:32963872-32963629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 156

               
               
               Conread position:17-296
               
               
               Cow position:chr5:23234215-23234504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):151, 102

               
               
               Conread position:17-297
               
               
               Cow position:chr5:72310470-72310741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 121

               
               
               Conread position:17-301
               
               
               Cow position:chr5:1779505-1779243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):14, 30

               
               
               Conread position:17-308
               
               
               Cow position:chr5:34115419-34115702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 100

               
               
               Conread position:17-312
               
               
               Cow position:chr5:1344101-1343797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:216
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):35, 22

               
               
               Conread position:17-317
               
               
               Cow position:chr5:41532414-41532110 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):54, 125

               
               
               Conread position:17-318
               
               
               Cow position:chr5:32975794-32975494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):151, 122

               
               
               Conread position:17-330
               
               
               Cow position:chr5:72287156-72286844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:213
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):24, 112

               
               
               Conread position:17-384
               
               
               Cow position:chr5:58855861-58856227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):163, 248

               
               
               Conread position:17-394
               
               
               Cow position:chr5:51999976-52000353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 264

               
               
               Conread position:17-398
               
               
               Cow position:chr5:40109258-40109631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 92

               
               
               Conread position:17-398
               
               
               Cow position:chr5:54350604-54350222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 104

               
               
               Conread position:17-398
               
               
               Cow position:chr5:69337589-69337959 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 29

               
               
               Conread position:17-400
               
               
               Cow position:chr5:6839322-6838939 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:271
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):42, 199

               
               
               Conread position:17-400
               
               
               Cow position:chr5:36854968-36855346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 104

               
               
               Conread position:17-402
               
               
               Cow position:chr5:1247032-1247404 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 157

               
               
               Conread position:17-408
               
               
               Cow position:chr5:62172172-62172561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:17-414
               
               
               Cow position:chr5:35684691-35685090 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 183

               
               
               Conread position:17-415
               
               
               Cow position:chr5:37377635-37378008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:401
               
               
               Alignm identity:277
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):243, 39

               
               
               Conread position:17-415
               
               
               Cow position:chr5:47601574-47601966 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:303
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 231

               
               
               Conread position:17-421
               
               
               Cow position:chr5:27306073-27306468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 175

               
               
               Conread position:17-421
               
               
               Cow position:chr5:55967126-55966723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 250

               
               
               Conread position:17-437
               
               
               Cow position:chr5:26477236-26476843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:277
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):39, 86

               
               
               Conread position:17-437
               
               
               Cow position:chr5:43929977-43929561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 108

               
               
               Conread position:17-476
               
               
               Cow position:chr5:458229-458698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:330
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 254

               
               
               Conread position:17-496
               
               
               Cow position:chr5:4710385-4709916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:325
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):460, 74

               
               
               Conread position:17-498
               
               
               Cow position:chr5:54311090-54311578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 65

               
               
               Conread position:17-511
               
               
               Cow position:chr5:49685524-49685022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:337
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 141

               
               
               Conread position:18-186
               
               
               Cow position:chr5:70608755-70608927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:124
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:18-230
               
               
               Cow position:chr5:4347953-4347757 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):149, 38

               
               
               Conread position:18-250
               
               
               Cow position:chr5:29560167-29560398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):85, 72

               
               
               Conread position:18-255
               
               
               Cow position:chr5:62855182-62855424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):39, 175

               
               
               Conread position:18-257
               
               
               Cow position:chr5:34232501-34232743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:180
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 11

               
               
               Conread position:18-257
               
               
               Cow position:chr5:45940849-45940616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):38, 74

               
               
               Conread position:18-284
               
               
               Cow position:chr5:72150008-72150275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:18-318
               
               
               Cow position:chr5:58144848-58144544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 274

               
               
               Conread position:18-358
               
               
               Cow position:chr5:17869473-17869787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:241
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):267, 44

               
               
               Conread position:18-395
               
               
               Cow position:chr5:67243682-67244054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:278
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 189

               
               
               Conread position:18-398
               
               
               Cow position:chr5:15363648-15364021 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 195

               
               
               Conread position:19-137
               
               
               Cow position:chr5:57890258-57890377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:98
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:19-170
               
               
               Cow position:chr5:61634003-61634153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):34, 7

               
               
               Conread position:19-170
               
               
               Cow position:chr5:65325799-65325951 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:112
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-172
               
               
               Cow position:chr5:22856563-22856409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:19-180
               
               
               Cow position:chr5:34923348-34923192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:135
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):37, 70

               
               
               Conread position:19-182
               
               
               Cow position:chr5:51360704-51360876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:19-193
               
               
               Cow position:chr5:20691700-20691536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:19-204
               
               
               Cow position:chr5:24837181-24837001 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:155
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:19-206
               
               
               Cow position:chr5:6032997-6033187 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:150
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-208
               
               
               Cow position:chr5:26541055-26541241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):148, 37

               
               
               Conread position:19-209
               
               
               Cow position:chr5:2851073-2851268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:157
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):105, 171

               
               
               Conread position:19-215
               
               
               Cow position:chr5:24642963-24642770 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:151
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 127

               
               
               Conread position:19-228
               
               
               Cow position:chr5:2332755-2332541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:159
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):38, 139

               
               
               Conread position:19-229
               
               
               Cow position:chr5:40759738-40759946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 102

               
               
               Conread position:19-243
               
               
               Cow position:chr5:71504887-71505108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-250
               
               
               Cow position:chr5:27904176-27904398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:163
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):34, 14

               
               
               Conread position:19-251
               
               
               Cow position:chr5:26098990-26099217 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):32, 130

               
               
               Conread position:19-259
               
               
               Cow position:chr5:66831955-66831713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:178
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 64

               
               
               Conread position:19-260
               
               
               Cow position:chr5:63173909-63173680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:19-261
               
               
               Cow position:chr5:34922076-34921834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:179
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):37, 161

               
               
               Conread position:19-263
               
               
               Cow position:chr5:40711684-40711433 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):42, 140

               
               
               Conread position:19-264
               
               
               Cow position:chr5:56384986-56385236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:179
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 49

               
               
               Conread position:19-267
               
               
               Cow position:chr5:15317184-15317434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:175
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):12, 36

               
               
               Conread position:19-267
               
               
               Cow position:chr5:33467283-33467033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):13, 116

               
               
               Conread position:19-272
               
               
               Cow position:chr5:10789920-10789663 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):12, 174

               
               
               Conread position:19-283
               
               
               Cow position:chr5:55088904-55089158 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):32, 51

               
               
               Conread position:19-305
               
               
               Cow position:chr5:37714146-37713848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 182

               
               
               Conread position:19-322
               
               
               Cow position:chr5:40928214-40927923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:220
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):36, 53

               
               
               Conread position:19-358
               
               
               Cow position:chr5:39695414-39695750 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:238
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:19-358
               
               
               Cow position:chr5:41598940-41598613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:236
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:19-360
               
               
               Cow position:chr5:25225890-25225541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 88

               
               
               Conread position:19-365
               
               
               Cow position:chr5:27615273-27615618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:246
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):35, 89

               
               
               Conread position:19-365
               
               
               Cow position:chr5:55989500-55989846 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:238
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 195

               
               
               Conread position:19-369
               
               
               Cow position:chr5:26046093-26046432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:242
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):107, 234

               
               
               Conread position:19-383
               
               
               Cow position:chr5:42744556-42744904 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):232, 37

               
               
               Conread position:19-396
               
               
               Cow position:chr5:37814382-37814763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 128

               
               
               Conread position:19-398
               
               
               Cow position:chr5:28229916-28230303 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:259
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):38, 135

               
               
               Conread position:19-398
               
               
               Cow position:chr5:68604618-68604992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):203, 233

               
               
               Conread position:19-399
               
               
               Cow position:chr5:37645833-37646221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 10

               
               
               Conread position:19-399
               
               
               Cow position:chr5:41334360-41334749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:256
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):59, 102

               
               
               Conread position:19-414
               
               
               Cow position:chr5:72903465-72903083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 37

               
               
               Conread position:19-515
               
               
               Cow position:chr5:34300684-34301186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:520
               
               
               Alignm identity:368
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 93

               
               
               Conread position:19-518
               
               
               Cow position:chr5:32339216-32338720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:517
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 210

               
               
               Conread position:20-173
               
               
               Cow position:chr5:9499333-9499175 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-177
               
               
               Cow position:chr5:37668638-37668798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 156

               
               
               Conread position:20-222
               
               
               Cow position:chr5:12563246-12563043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:159
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):76, 188

               
               
               Conread position:20-354
               
               
               Cow position:chr5:73079972-73080300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:238
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):38, 68

               
               
               Conread position:20-358
               
               
               Cow position:chr5:59438927-59439272 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):37, 196

               
               
               Conread position:20-401
               
               
               Cow position:chr5:75244530-75244135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:266
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):37, 239

               
               
               Conread position:20-508
               
               
               Cow position:chr5:37646792-37646292 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:505
               
               
               Alignm identity:363
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 139

               
               
               Conread position:20-525
               
               
               Cow position:chr5:25035467-25035008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:370
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 87

               
               
               Conread position:21-243
               
               
               Cow position:chr5:31434027-31434245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):31, 6

               
               
               Conread position:21-252
               
               
               Cow position:chr5:21547536-21547304 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):5, 156

               
               
               Conread position:21-317
               
               
               Cow position:chr5:18902621-18902920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):106, 44

               
               
               Conread position:21-351
               
               
               Cow position:chr5:20127815-20128144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 66

               
               
               Conread position:21-399
               
               
               Cow position:chr5:14904306-14903928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):146, 39

               
               
               Conread position:22-170
               
               
               Cow position:chr5:25937773-25937926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:113
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:22-262
               
               
               Cow position:chr5:15882719-15882463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):26, 0

               
               
               Conread position:23-162
               
               
               Cow position:chr5:72605812-72605950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:110
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):34, 117

               
               
               Conread position:23-206
               
               
               Cow position:chr5:32087958-32087767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:150
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:23-226
               
               
               Cow position:chr5:68715596-68715796 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):33, 153

               
               
               Conread position:23-242
               
               
               Cow position:chr5:23753463-23753238 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):13, 176

               
               
               Conread position:23-249
               
               
               Cow position:chr5:56433564-56433794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:183
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 33

               
               
               Conread position:23-251
               
               
               Cow position:chr5:60519929-60520155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:193
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 92

               
               
               Conread position:23-259
               
               
               Cow position:chr5:9083100-9083341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):79, 35

               
               
               Conread position:23-263
               
               
               Cow position:chr5:4630891-4631124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:23-263
               
               
               Cow position:chr5:45226061-45225819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 70

               
               
               Conread position:23-267
               
               
               Cow position:chr5:25919851-25919625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:23-267
               
               
               Cow position:chr5:50263836-50263602 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:23-285
               
               
               Cow position:chr5:9859955-9859685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 180

               
               
               Conread position:23-298
               
               
               Cow position:chr5:30639087-30638824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):145, 33

               
               
               Conread position:23-298
               
               
               Cow position:chr5:53842054-53842320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:199
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):28, 41

               
               
               Conread position:23-322
               
               
               Cow position:chr5:2500418-2500116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):122, 33

               
               
               Conread position:23-327
               
               
               Cow position:chr5:13536920-13537207 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:23-334
               
               
               Cow position:chr5:56443039-56443350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:224
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 31

               
               
               Conread position:23-336
               
               
               Cow position:chr5:70102045-70101746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:226
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):104, 121

               
               
               Conread position:23-358
               
               
               Cow position:chr5:46798015-46798343 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):34, 61

               
               
               Conread position:23-365
               
               
               Cow position:chr5:4617136-4617472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:236
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):20, 8

               
               
               Conread position:23-365
               
               
               Cow position:chr5:40233896-40234226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:231
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:23-365
               
               
               Cow position:chr5:64398765-64399114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:237
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):33, 243

               
               
               Conread position:23-366
               
               
               Cow position:chr5:11668415-11668078 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 107

               
               
               Conread position:23-366
               
               
               Cow position:chr5:41129528-41129849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 102

               
               
               Conread position:23-366
               
               
               Cow position:chr5:43738185-43737856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:23-384
               
               
               Cow position:chr5:16894013-16893646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 175

               
               
               Conread position:23-398
               
               
               Cow position:chr5:30844875-30845247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 16

               
               
               Conread position:23-398
               
               
               Cow position:chr5:38832880-38833260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 196

               
               
               Conread position:23-404
               
               
               Cow position:chr5:26467383-26467773 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 44

               
               
               Conread position:23-414
               
               
               Cow position:chr5:35208024-35208414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 155

               
               
               Conread position:23-421
               
               
               Cow position:chr5:4032226-4031824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:23-527
               
               
               Cow position:chr5:53835478-53835972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:513
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 16

               
               
               Conread position:24-242
               
               
               Cow position:chr5:56201357-56201141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:158
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):27, 79

               
               
               Conread position:24-298
               
               
               Cow position:chr5:54064543-54064815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:203
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):28, 104

               
               
               Conread position:24-312
               
               
               Cow position:chr5:48144027-48143731 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 69

               
               
               Conread position:24-326
               
               
               Cow position:chr5:34885392-34885096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:24-348
               
               
               Cow position:chr5:13908847-13908525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):33, 104

               
               
               Conread position:24-398
               
               
               Cow position:chr5:65776622-65776245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 224

               
               
               Conread position:24-401
               
               
               Cow position:chr5:65588476-65588844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):240, 35

               
               
               Conread position:24-412
               
               
               Cow position:chr5:67932697-67932319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 78

               
               
               Conread position:24-414
               
               
               Cow position:chr5:12323039-12322652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 202

               
               
               Conread position:24-503
               
               
               Cow position:chr5:5715073-5714582 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:499
               
               
               Alignm identity:316
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):46, 41

               
               
               Conread position:25-165
               
               
               Cow position:chr5:35125781-35125923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 136

               
               
               Conread position:25-190
               
               
               Cow position:chr5:1460660-1460492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):26, 135

               
               
               Conread position:25-210
               
               
               Cow position:chr5:31604867-31604683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:141
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 66

               
               
               Conread position:25-247
               
               
               Cow position:chr5:75828969-75828752 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):93, 49

               
               
               Conread position:25-249
               
               
               Cow position:chr5:45036785-45037011 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 158

               
               
               Conread position:25-250
               
               
               Cow position:chr5:9234316-9234085 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 151

               
               
               Conread position:25-251
               
               
               Cow position:chr5:72041988-72042215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 48

               
               
               Conread position:25-264
               
               
               Cow position:chr5:70582133-70581890 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:25-292
               
               
               Cow position:chr5:694352-694608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:193
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):85, 90

               
               
               Conread position:25-315
               
               
               Cow position:chr5:50900673-50900954 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:199
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:25-358
               
               
               Cow position:chr5:60952426-60952759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):34, 42

               
               
               Conread position:25-384
               
               
               Cow position:chr5:57626574-57626913 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 31

               
               
               Conread position:25-398
               
               
               Cow position:chr5:17063329-17062942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 88

               
               
               Conread position:25-423
               
               
               Cow position:chr5:30253510-30253903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:313
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 53

               
               
               Conread position:26-173
               
               
               Cow position:chr5:59450968-59450818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:113
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):109, 37

               
               
               Conread position:26-242
               
               
               Cow position:chr5:3824864-3825070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:156
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):72, 77

               
               
               Conread position:26-257
               
               
               Cow position:chr5:68480990-68481236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:178
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):156, 0

               
               
               Conread position:26-365
               
               
               Cow position:chr5:34183983-34184329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:246
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):25, 246

               
               
               Conread position:26-419
               
               
               Cow position:chr5:68871958-68872359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:288
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 56

               
               
               Conread position:26-503
               
               
               Cow position:chr5:43992091-43992575 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:492
               
               
               Alignm identity:343
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:26-504
               
               
               Cow position:chr5:24996458-24995993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 50

               
               
               Conread position:27-173
               
               
               Cow position:chr5:10254614-10254464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):75, 29

               
               
               Conread position:27-216
               
               
               Cow position:chr5:15462485-15462672 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:152
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):143, 19

               
               
               Conread position:27-243
               
               
               Cow position:chr5:56135202-56134984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:168
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):30, 163

               
               
               Conread position:27-252
               
               
               Cow position:chr5:57126782-57127007 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):82, 30

               
               
               Conread position:27-268
               
               
               Cow position:chr5:63236091-63235845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:174
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 218

               
               
               Conread position:27-302
               
               
               Cow position:chr5:42777531-42777808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:211
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 101

               
               
               Conread position:27-366
               
               
               Cow position:chr5:48573994-48573669 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:233
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):29, 104

               
               
               Conread position:27-391
               
               
               Cow position:chr5:15426295-15426670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 37

               
               
               Conread position:27-396
               
               
               Cow position:chr5:6683581-6683230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 75

               
               
               Conread position:27-397
               
               
               Cow position:chr5:72007086-72006727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:373
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 99

               
               
               Conread position:27-398
               
               
               Cow position:chr5:67212145-67212499 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 150

               
               
               Conread position:27-407
               
               
               Cow position:chr5:75437130-75436743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 330

               
               
               Conread position:27-514
               
               
               Cow position:chr5:28324112-28324597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:361
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 241

               
               
               Conread position:28-246
               
               
               Cow position:chr5:1105103-1104875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:178
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:28-315
               
               
               Cow position:chr5:3627400-3627096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 212

               
               
               Conread position:28-369
               
               
               Cow position:chr5:41636641-41636977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:239
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):164, 92

               
               
               Conread position:28-515
               
               
               Cow position:chr5:45613137-45613628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:504
               
               
               Alignm identity:313
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):37, 47

               
               
               Conread position:29-164
               
               
               Cow position:chr5:49566909-49567035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:137
               
               
               Alignm identity:109
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):23, 69

               
               
               Conread position:29-198
               
               
               Cow position:chr5:61455523-61455698 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:140
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:29-226
               
               
               Cow position:chr5:28016919-28017115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:147
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):95, 36

               
               
               Conread position:29-252
               
               
               Cow position:chr5:69773340-69773560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):28, 112

               
               
               Conread position:29-312
               
               
               Cow position:chr5:12709655-12709942 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:29-322
               
               
               Cow position:chr5:40388097-40387810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):22, 72

               
               
               Conread position:29-325
               
               
               Cow position:chr5:32956321-32956026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):214, 26

               
               
               Conread position:29-351
               
               
               Cow position:chr5:23826951-23826620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):33, 262

               
               
               Conread position:29-360
               
               
               Cow position:chr5:64137020-64137357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:29-396
               
               
               Cow position:chr5:20779611-20779261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):220, 26

               
               
               Conread position:29-399
               
               
               Cow position:chr5:7723441-7723805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:374
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):137, 41

               
               
               Conread position:30-170
               
               
               Cow position:chr5:9972947-9972810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:107
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):26, 88

               
               
               Conread position:30-201
               
               
               Cow position:chr5:62573874-62574043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:124
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:30-235
               
               
               Cow position:chr5:9070719-9070519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):21, 110

               
               
               Conread position:30-236
               
               
               Cow position:chr5:26367799-26368009 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:30-250
               
               
               Cow position:chr5:1276705-1276473 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:30-321
               
               
               Cow position:chr5:9430689-9430400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):26, 126

               
               
               Conread position:30-340
               
               
               Cow position:chr5:23925141-23924831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:202
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):27, 34

               
               
               Conread position:30-351
               
               
               Cow position:chr5:36868515-36868829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 117

               
               
               Conread position:30-356
               
               
               Cow position:chr5:741180-740843 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 217

               
               
               Conread position:30-412
               
               
               Cow position:chr5:3771616-3771997 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:394
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 107

               
               
               Conread position:30-418
               
               
               Cow position:chr5:57074565-57074173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):26, 194

               
               
               Conread position:30-488
               
               
               Cow position:chr5:27353466-27353008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:468
               
               
               Alignm identity:295
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):27, 81

               
               
               Conread position:31-259
               
               
               Cow position:chr5:62027175-62026947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:176
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):137, 109

               
               
               Conread position:31-312
               
               
               Cow position:chr5:1766574-1766296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:208
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):25, 159

               
               
               Conread position:31-408
               
               
               Cow position:chr5:72895463-72895835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:380
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 93

               
               
               Conread position:32-156
               
               
               Cow position:chr5:44735157-44735028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:101
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:32-217
               
               
               Cow position:chr5:63456802-63456613 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):25, 14

               
               
               Conread position:32-298
               
               
               Cow position:chr5:51490982-51490725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 51

               
               
               Conread position:33-215
               
               
               Cow position:chr5:66297011-66297194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:145
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):23, 92

               
               
               Conread position:33-243
               
               
               Cow position:chr5:54530755-54530961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:172
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):21, 152

               
               
               Conread position:33-252
               
               
               Cow position:chr5:4063373-4063151 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):94, 26

               
               
               Conread position:33-264
               
               
               Cow position:chr5:69516934-69516699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:163
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):24, 200

               
               
               Conread position:33-283
               
               
               Cow position:chr5:73252869-73253112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:182
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):18, 87

               
               
               Conread position:33-316
               
               
               Cow position:chr5:38882659-38882371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):18, 227

               
               
               Conread position:33-336
               
               
               Cow position:chr5:27154795-27155094 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 72

               
               
               Conread position:33-339
               
               
               Cow position:chr5:28926412-28926100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 31

               
               
               Conread position:33-344
               
               
               Cow position:chr5:46122576-46122268 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 22

               
               
               Conread position:33-351
               
               
               Cow position:chr5:41303318-41302986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:239
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):20, 123

               
               
               Conread position:33-351
               
               
               Cow position:chr5:65765339-65765037 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:222
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):18, 68

               
               
               Conread position:33-354
               
               
               Cow position:chr5:37064866-37065193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 144

               
               
               Conread position:33-355
               
               
               Cow position:chr5:56820487-56820168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 55

               
               
               Conread position:33-356
               
               
               Cow position:chr5:16938235-16937925 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:234
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):23, 74

               
               
               Conread position:33-399
               
               
               Cow position:chr5:71454823-71454472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 166

               
               
               Conread position:33-415
               
               
               Cow position:chr5:56070626-56071014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:391
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 32

               
               
               Conread position:33-423
               
               
               Cow position:chr5:21828637-21829029 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 315

               
               
               Conread position:33-488
               
               
               Cow position:chr5:74858346-74858798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:462
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 37

               
               
               Conread position:33-503
               
               
               Cow position:chr5:52165409-52164946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:480
               
               
               Alignm identity:347
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 311

               
               
               Conread position:34-170
               
               
               Cow position:chr5:43004565-43004702 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:107
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:34-269
               
               
               Cow position:chr5:39710613-39710851 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):91, 22

               
               
               Conread position:35-244
               
               
               Cow position:chr5:52206988-52207199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):21, 30

               
               
               Conread position:35-256
               
               
               Cow position:chr5:72891976-72891760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):31, 76

               
               
               Conread position:35-365
               
               
               Cow position:chr5:68082192-68081867 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):15, 153

               
               
               Conread position:37-240
               
               
               Cow position:chr5:504131-503936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):14, 9

               
               
               Conread position:37-399
               
               
               Cow position:chr5:47696671-47696310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:252
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):80, 11

               
               
               Conread position:38-165
               
               
               Cow position:chr5:62378280-62378410 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:132
               
               
               Alignm identity:109
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:38-216
               
               
               Cow position:chr5:14415551-14415736 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:150
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):86, 66

               
               
               Conread position:38-243
               
               
               Cow position:chr5:5848409-5848205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:164
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):18, 77

               
               
               Conread position:38-247
               
               
               Cow position:chr5:3058458-3058664 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):154, 75

               
               
               Conread position:38-282
               
               
               Cow position:chr5:12803273-12803533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):15, 241

               
               
               Conread position:38-365
               
               
               Cow position:chr5:1950282-1949948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):206, 41

               
               
               Conread position:38-397
               
               
               Cow position:chr5:56028752-56028403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 182

               
               
               Conread position:38-411
               
               
               Cow position:chr5:22243007-22242615 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 33

               
               
               Conread position:39-166
               
               
               Cow position:chr5:55985771-55985639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:105
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-185
               
               
               Cow position:chr5:36479762-36479611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):12, 25

               
               
               Conread position:39-238
               
               
               Cow position:chr5:9024480-9024287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):17, 35

               
               
               Conread position:39-238
               
               
               Cow position:chr5:50425699-50425493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:151
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-249
               
               
               Cow position:chr5:18090506-18090714 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:170
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):17, 77

               
               
               Conread position:39-251
               
               
               Cow position:chr5:39049239-39049441 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:159
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):17, 79

               
               
               Conread position:39-255
               
               
               Cow position:chr5:54111697-54111919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:162
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):15, 106

               
               
               Conread position:39-316
               
               
               Cow position:chr5:48937573-48937291 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:183
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):12, 222

               
               
               Conread position:39-318
               
               
               Cow position:chr5:27492257-27492542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:201
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):64, 20

               
               
               Conread position:39-334
               
               
               Cow position:chr5:59873627-59873331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:210
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):18, 73

               
               
               Conread position:39-351
               
               
               Cow position:chr5:26637445-26637758 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:203
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):88, 40

               
               
               Conread position:39-351
               
               
               Cow position:chr5:32698642-32698317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):18, 102

               
               
               Conread position:39-354
               
               
               Cow position:chr5:48757723-48758035 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:39-358
               
               
               Cow position:chr5:25900085-25899775 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:227
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):59, 17

               
               
               Conread position:39-364
               
               
               Cow position:chr5:40152254-40152591 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):17, 0

               
               
               Conread position:39-384
               
               
               Cow position:chr5:19813433-19813095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 27

               
               
               Conread position:39-392
               
               
               Cow position:chr5:15722275-15721941 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 25

               
               
               Conread position:39-398
               
               
               Cow position:chr5:16025682-16025329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 179

               
               
               Conread position:39-399
               
               
               Cow position:chr5:27411611-27411261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:245
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):17, 33

               
               
               Conread position:39-399
               
               
               Cow position:chr5:29756118-29756476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:219
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):82, 17

               
               
               Conread position:39-409
               
               
               Cow position:chr5:5257518-5257140 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 132

               
               
               Conread position:39-413
               
               
               Cow position:chr5:54086319-54086690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 20

               
               
               Conread position:39-415
               
               
               Cow position:chr5:68718662-68719024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):215, 57

               
               
               Conread position:39-512
               
               
               Cow position:chr5:25495559-25495116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:479
               
               
               Alignm identity:340
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 64

               
               
               Conread position:40-189
               
               
               Cow position:chr5:15412472-15412629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:158
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:40-236
               
               
               Cow position:chr5:14557459-14557256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):27, 0

               
               
               Conread position:40-311
               
               
               Cow position:chr5:2836261-2836537 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:179
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):11, 220

               
               
               Conread position:40-322
               
               
               Cow position:chr5:21964071-21964352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:208
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):43, 28

               
               
               Conread position:40-354
               
               
               Cow position:chr5:2309785-2309461 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 193

               
               
               Conread position:41-348
               
               
               Cow position:chr5:72172804-72173116 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):16, 159

               
               
               Conread position:41-361
               
               
               Cow position:chr5:37425524-37425844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):84, 137

               
               
               Conread position:41-365
               
               
               Cow position:chr5:39442073-39442403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):12, 126

               
               
               Conread position:42-164
               
               
               Cow position:chr5:29860101-29860230 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:104
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:42-212
               
               
               Cow position:chr5:66281011-66280838 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:140
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:42-342
               
               
               Cow position:chr5:59133658-59133357 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:42-342
               
               
               Cow position:chr5:59471684-59471383 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):15, 98

               
               
               Conread position:42-395
               
               
               Cow position:chr5:62142452-62142812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):13, 157

               
               
               Conread position:43-158
               
               
               Cow position:chr5:60183308-60183424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:117
               
               
               Alignm identity:100
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:43-301
               
               
               Cow position:chr5:55145580-55145326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:182
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):28, 147

               
               
               Conread position:43-308
               
               
               Cow position:chr5:60126156-60126422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 112

               
               
               Conread position:43-341
               
               
               Cow position:chr5:63185469-63185172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:225
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):78, 7

               
               
               Conread position:44-180
               
               
               Cow position:chr5:29431806-29431671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:105
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):132, 84

               
               
               Conread position:44-331
               
               
               Cow position:chr5:49362207-49361924 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:216
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):10, 31

               
               
               Conread position:44-397
               
               
               Cow position:chr5:64176337-64175988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 196

               
               
               Conread position:45-311
               
               
               Cow position:chr5:8024407-8024141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:270
               
               
               Alignm identity:205
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 22

               
               
               Conread position:45-332
               
               
               Cow position:chr5:28456626-28456332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 143

               
               
               Conread position:45-332
               
               
               Cow position:chr5:28459928-28459633 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):27, 144

               
               
               Conread position:46-316
               
               
               Cow position:chr5:35235923-35235652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):10, 146

               
               
               Conread position:47-255
               
               
               Cow position:chr5:19078902-19079113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:124
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):125, 93

               
               
               Conread position:47-386
               
               
               Cow position:chr5:44049490-44049824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:243
               
               
               Alignm E-value:7.00649e-45
               
               
               Alignm gaps (pig, cow):125, 71

               
               
               Conread position:47-414
               
               
               Cow position:chr5:4280251-4280601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 77

               
               
               Conread position:48-355
               
               
               Cow position:chr5:56518421-56518126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 0

               
               
               Conread position:48-418
               
               
               Cow position:chr5:7755766-7755407 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:378
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 11

               
               
               Conread position:49-242
               
               
               Cow position:chr5:71158474-71158278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:49-349
               
               
               Cow position:chr5:11427452-11427143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):74, 198

               
               
               Conread position:49-351
               
               
               Cow position:chr5:68265174-68264866 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):66, 151

               
               
               Conread position:49-353
               
               
               Cow position:chr5:29212738-29213032 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):92, 69

               
               
               Conread position:49-360
               
               
               Cow position:chr5:3242684-3242380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 95

               
               
               Conread position:49-384
               
               
               Cow position:chr5:64758973-64758642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 17

               
               
               Conread position:49-385
               
               
               Cow position:chr5:5201706-5202026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):54, 35

               
               
               Conread position:50-171
               
               
               Cow position:chr5:32269563-32269684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:97
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:50-227
               
               
               Cow position:chr5:14512903-14513086 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:139
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):71, 27

               
               
               Conread position:50-233
               
               
               Cow position:chr5:43395347-43395166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:150
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):124, 44

               
               
               Conread position:50-265
               
               
               Cow position:chr5:55821158-55821380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:170
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):92, 9

               
               
               Conread position:50-351
               
               
               Cow position:chr5:47547926-47547631 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 24

               
               
               Conread position:50-351
               
               
               Cow position:chr5:48154682-48154373 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:228
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):79, 50

               
               
               Conread position:50-355
               
               
               Cow position:chr5:40039980-40039670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 99

               
               
               Conread position:50-384
               
               
               Cow position:chr5:6572542-6572869 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):65, 168

               
               
               Conread position:50-392
               
               
               Cow position:chr5:45803851-45804193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 61

               
               
               Conread position:50-399
               
               
               Cow position:chr5:18898774-18899113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:50-412
               
               
               Cow position:chr5:26262883-26262526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:370
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 42

               
               
               Conread position:50-420
               
               
               Cow position:chr5:71494607-71494982 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 168

               
               
               Conread position:50-513
               
               
               Cow position:chr5:35969333-35969777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):430, 141

               
               
               Conread position:50-517
               
               
               Cow position:chr5:57736905-57737360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:317
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):372, 69

               
               
               Conread position:51-249
               
               
               Cow position:chr5:57271473-57271275 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:163
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):58, 75

               
               
               Conread position:51-308
               
               
               Cow position:chr5:7140313-7140057 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:196
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):117, 69

               
               
               Conread position:51-351
               
               
               Cow position:chr5:57706707-57707013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:205
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):73, 221

               
               
               Conread position:51-398
               
               
               Cow position:chr5:8821220-8820874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:257
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 141

               
               
               Conread position:51-399
               
               
               Cow position:chr5:58320670-58320331 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:242
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):213, 77

               
               
               Conread position:52-366
               
               
               Cow position:chr5:51053855-51053542 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):244, 149

               
               
               Conread position:52-398
               
               
               Cow position:chr5:41713109-41713438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):57, 23

               
               
               Conread position:53-249
               
               
               Cow position:chr5:72845979-72845789 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):73, 56

               
               
               Conread position:54-298
               
               
               Cow position:chr5:8994771-8994526 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:194
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):204, 121

               
               
               Conread position:54-366
               
               
               Cow position:chr5:6896332-6896020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):73, 107

               
               
               Conread position:55-335
               
               
               Cow position:chr5:35449049-35449312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:212
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 0

               
               
               Conread position:55-350
               
               
               Cow position:chr5:52667823-52668129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:227
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):10, 14

               
               
               Conread position:56-488
               
               
               Cow position:chr5:23169022-23168590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:328
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):202, 64

               
               
               Conread position:56-512
               
               
               Cow position:chr5:34977039-34976608 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:461
               
               
               Alignm identity:314
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):152, 7

               
               
               Conread position:57-351
               
               
               Cow position:chr5:45409123-45409415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:219
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 74

               
               
               Conread position:58-352
               
               
               Cow position:chr5:9390334-9390646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 0

               
               
               Conread position:62-170
               
               
               Cow position:chr5:56137242-56137133 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:110
               
               
               Alignm identity:93
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:63-298
               
               
               Cow position:chr5:62995649-62995886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):112, 24

               
               
               Conread position:63-305
               
               
               Cow position:chr5:24485622-24485388 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:184
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):178, 51

               
               
               Conread position:63-398
               
               
               Cow position:chr5:69731321-69731639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:244
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):186, 55

               
               
               Conread position:65-253
               
               
               Cow position:chr5:74019965-74019777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):109, 19

               
               
               Conread position:65-404
               
               
               Cow position:chr5:22643412-22643087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:254
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):88, 126

               
               
               Conread position:66-284
               
               
               Cow position:chr5:24361340-24361552 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):105, 122

               
               
               Conread position:66-328
               
               
               Cow position:chr5:32282137-32282406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:175
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):59, 263

               
               
               Conread position:66-358
               
               
               Cow position:chr5:3649654-3649363 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:203
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):61, 46

               
               
               Conread position:66-398
               
               
               Cow position:chr5:50215752-50215425 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 21

               
               
               Conread position:66-410
               
               
               Cow position:chr5:50943347-50943005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:353
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):61, 192

               
               
               Conread position:67-229
               
               
               Cow position:chr5:50870349-50870516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:134
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:67-249
               
               
               Cow position:chr5:75230491-75230668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):101, 47

               
               
               Conread position:67-384
               
               
               Cow position:chr5:57575574-57575898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 8

               
               
               Conread position:67-392
               
               
               Cow position:chr5:74003820-74003502 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):105, 47

               
               
               Conread position:68-321
               
               
               Cow position:chr5:1678208-1678454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:185
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):105, 51

               
               
               Conread position:68-386
               
               
               Cow position:chr5:30178702-30178378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:226
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):66, 168

               
               
               Conread position:69-334
               
               
               Cow position:chr5:66403953-66404208 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:200
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:70-263
               
               
               Cow position:chr5:53146075-53145881 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):57, 6

               
               
               Conread position:70-276
               
               
               Cow position:chr5:67445084-67445284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:148
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):99, 40

               
               
               Conread position:70-336
               
               
               Cow position:chr5:4322221-4322484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):56, 106

               
               
               Conread position:70-351
               
               
               Cow position:chr5:8163013-8162726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:197
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):52, 0

               
               
               Conread position:70-351
               
               
               Cow position:chr5:52040509-52040231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):59, 83

               
               
               Conread position:70-358
               
               
               Cow position:chr5:57591501-57591787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:70-360
               
               
               Cow position:chr5:17371890-17371597 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):99, 16

               
               
               Conread position:70-384
               
               
               Cow position:chr5:48010036-48009734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):155, 57

               
               
               Conread position:70-386
               
               
               Cow position:chr5:74610881-74610576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:218
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):59, 125

               
               
               Conread position:70-410
               
               
               Cow position:chr5:34561819-34562169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:70-412
               
               
               Cow position:chr5:69461145-69461486 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):180, 147

               
               
               Conread position:70-421
               
               
               Cow position:chr5:4220791-4221141 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):63, 199

               
               
               Conread position:71-157
               
               
               Cow position:chr5:40531638-40531548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:91
               
               
               Alignm identity:80
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:71-384
               
               
               Cow position:chr5:7044899-7044580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 196

               
               
               Conread position:72-308
               
               
               Cow position:chr5:44587481-44587236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):68, 219

               
               
               Conread position:72-365
               
               
               Cow position:chr5:31561348-31561642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):92, 44

               
               
               Conread position:73-217
               
               
               Cow position:chr5:12820131-12820271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):97, 55

               
               
               Conread position:73-249
               
               
               Cow position:chr5:17644842-17644665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:145
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:73-317
               
               
               Cow position:chr5:59354560-59354310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):53, 171

               
               
               Conread position:73-399
               
               
               Cow position:chr5:68330169-68329848 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):44, 101

               
               
               Conread position:74-214
               
               
               Cow position:chr5:64939178-64939319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:117
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 119

               
               
               Conread position:74-429
               
               
               Cow position:chr5:76366467-76366122 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):142, 7

               
               
               Conread position:75-243
               
               
               Cow position:chr5:30561535-30561705 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):88, 26

               
               
               Conread position:75-333
               
               
               Cow position:chr5:6670382-6670119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 135

               
               
               Conread position:75-398
               
               
               Cow position:chr5:61810608-61810910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:230
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):61, 0

               
               
               Conread position:75-531
               
               
               Cow position:chr5:46512951-46512516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:334
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 22

               
               
               Conread position:76-397
               
               
               Cow position:chr5:5855696-5855996 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:219
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:76-398
               
               
               Cow position:chr5:3639666-3639358 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):10, 68

               
               
               Conread position:76-398
               
               
               Cow position:chr5:37808848-37808524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:231
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):167, 60

               
               
               Conread position:76-406
               
               
               Cow position:chr5:34624785-34625105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:242
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 100

               
               
               Conread position:77-227
               
               
               Cow position:chr5:57576031-57576184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):50, 34

               
               
               Conread position:77-366
               
               
               Cow position:chr5:55928760-55929051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:205
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):175, 106

               
               
               Conread position:77-417
               
               
               Cow position:chr5:47323268-47323618 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:247
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):40, 80

               
               
               Conread position:77-464
               
               
               Cow position:chr5:17768326-17767943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 39

               
               
               Conread position:78-258
               
               
               Cow position:chr5:66281230-66281408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:142
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):114, 135

               
               
               Conread position:78-265
               
               
               Cow position:chr5:39242371-39242193 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:78-351
               
               
               Cow position:chr5:71722879-71723168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:210
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:78-358
               
               
               Cow position:chr5:54089856-54090134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 115

               
               
               Conread position:79-252
               
               
               Cow position:chr5:34167780-34167953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):117, 66

               
               
               Conread position:79-398
               
               
               Cow position:chr5:14629996-14629666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:332
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 17

               
               
               Conread position:80-297
               
               
               Cow position:chr5:17812835-17812620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 133

               
               
               Conread position:80-480
               
               
               Cow position:chr5:59631301-59631688 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:273
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):5, 115

               
               
               Conread position:81-323
               
               
               Cow position:chr5:3668719-3668962 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):35, 134

               
               
               Conread position:81-406
               
               
               Cow position:chr5:44028480-44028164 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 111

               
               
               Conread position:81-419
               
               
               Cow position:chr5:65136105-65136423 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 85

               
               
               Conread position:82-322
               
               
               Cow position:chr5:28957794-28957551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:173
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):45, 140

               
               
               Conread position:82-392
               
               
               Cow position:chr5:6286604-6286300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 148

               
               
               Conread position:83-235
               
               
               Cow position:chr5:35231363-35231521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:83-236
               
               
               Cow position:chr5:31945394-31945550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 132

               
               
               Conread position:83-298
               
               
               Cow position:chr5:42705088-42705300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):85, 128

               
               
               Conread position:83-351
               
               
               Cow position:chr5:57266074-57265812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:191
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 93

               
               
               Conread position:83-415
               
               
               Cow position:chr5:31217235-31216897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):85, 102

               
               
               Conread position:83-478
               
               
               Cow position:chr5:38838234-38837837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:258
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):44, 160

               
               
               Conread position:83-498
               
               
               Cow position:chr5:51935006-51935442 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:441
               
               
               Alignm identity:292
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):42, 194

               
               
               Conread position:83-515
               
               
               Cow position:chr5:3428376-3428819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:450
               
               
               Alignm identity:278
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 155

               
               
               Conread position:84-249
               
               
               Cow position:chr5:43816786-43816620 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):43, 8

               
               
               Conread position:84-351
               
               
               Cow position:chr5:19778759-19778481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):61, 56

               
               
               Conread position:84-355
               
               
               Cow position:chr5:69520715-69520987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:202
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 127

               
               
               Conread position:84-365
               
               
               Cow position:chr5:45472090-45472393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:222
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):51, 193

               
               
               Conread position:84-399
               
               
               Cow position:chr5:62638730-62639044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 173

               
               
               Conread position:85-227
               
               
               Cow position:chr5:45026092-45025950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):89, 127

               
               
               Conread position:85-318
               
               
               Cow position:chr5:29980160-29979922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:243
               
               
               Alignm identity:172
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):48, 93

               
               
               Conread position:85-488
               
               
               Cow position:chr5:52192822-52192414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:416
               
               
               Alignm identity:264
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):42, 158

               
               
               Conread position:86-415
               
               
               Cow position:chr5:3549951-3549647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:245
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):161, 35

               
               
               Conread position:87-209
               
               
               Cow position:chr5:23913914-23914043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:130
               
               
               Alignm identity:103
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:87-347
               
               
               Cow position:chr5:67645308-67645050 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-31
               
               
               Alignm gaps (pig, cow):209, 40

               
               
               Conread position:87-398
               
               
               Cow position:chr5:41452839-41452533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):40, 61

               
               
               Conread position:87-519
               
               
               Cow position:chr5:60708322-60708751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:449
               
               
               Alignm identity:287
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 192

               
               
               Conread position:89-278
               
               
               Cow position:chr5:31223087-31222896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):38, 150

               
               
               Conread position:89-369
               
               
               Cow position:chr5:41010167-41009894 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 118

               
               
               Conread position:89-438
               
               
               Cow position:chr5:56317124-56317465 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 112

               
               
               Conread position:90-292
               
               
               Cow position:chr5:59777867-59777661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:150
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 7

               
               
               Conread position:90-398
               
               
               Cow position:chr5:74580623-74580928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:220
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):37, 109

               
               
               Conread position:90-431
               
               
               Cow position:chr5:11540213-11539882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:229
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):78, 29

               
               
               Conread position:91-264
               
               
               Cow position:chr5:51995301-51995480 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:129
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:91-299
               
               
               Cow position:chr5:43448813-43448599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:91-397
               
               
               Cow position:chr5:30950088-30949777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 135

               
               
               Conread position:92-236
               
               
               Cow position:chr5:6140808-6140953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:92-238
               
               
               Cow position:chr5:61875345-61875205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):31, 51

               
               
               Conread position:92-259
               
               
               Cow position:chr5:69414002-69414173 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:124
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):35, 149

               
               
               Conread position:92-301
               
               
               Cow position:chr5:40169354-40169146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):76, 41

               
               
               Conread position:92-358
               
               
               Cow position:chr5:44028913-44028654 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):35, 107

               
               
               Conread position:92-365
               
               
               Cow position:chr5:7552586-7552310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:92-399
               
               
               Cow position:chr5:56014567-56014871 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 110

               
               
               Conread position:92-405
               
               
               Cow position:chr5:12866996-12866684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:216
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):31, 179

               
               
               Conread position:92-414
               
               
               Cow position:chr5:30092797-30092467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-37
               
               
               Alignm gaps (pig, cow):28, 172

               
               
               Conread position:92-517
               
               
               Cow position:chr5:69511491-69511927 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:270
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):35, 167

               
               
               Conread position:93-262
               
               
               Cow position:chr5:24616289-24616115 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:178
               
               
               Alignm identity:137
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 158

               
               
               Conread position:93-460
               
               
               Cow position:chr5:59115214-59115583 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:256
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):48, 165

               
               
               Conread position:93-503
               
               
               Cow position:chr5:30629324-30628926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):153, 129

               
               
               Conread position:94-396
               
               
               Cow position:chr5:65967897-65967594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 126

               
               
               Conread position:94-399
               
               
               Cow position:chr5:39874957-39875264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:314
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):33, 23

               
               
               Conread position:96-279
               
               
               Cow position:chr5:41486901-41486717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:189
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):5, 30

               
               
               Conread position:96-279
               
               
               Cow position:chr5:64060457-64060274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:137
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):71, 89

               
               
               Conread position:96-334
               
               
               Cow position:chr5:62985353-62985599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):33, 118

               
               
               Conread position:96-398
               
               
               Cow position:chr5:54060110-54060415 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):39, 139

               
               
               Conread position:96-399
               
               
               Cow position:chr5:16214524-16214827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:211
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):156, 61

               
               
               Conread position:97-336
               
               
               Cow position:chr5:21920205-21920457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):30, 226

               
               
               Conread position:99-215
               
               
               Cow position:chr5:39872688-39872801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:118
               
               
               Alignm identity:102
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):51, 97

               
               
               Conread position:99-249
               
               
               Cow position:chr5:71579013-71579165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:126
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:99-351
               
               
               Cow position:chr5:36255420-36255165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):71, 92

               
               
               Conread position:99-399
               
               
               Cow position:chr5:46426011-46425715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:303
               
               
               Alignm identity:216
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):157, 118

               
               
               Conread position:99-402
               
               
               Cow position:chr5:35247271-35246968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:224
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 100

               
               
               Conread position:99-409
               
               
               Cow position:chr5:45397418-45397717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 98

               
               
               Conread position:99-488
               
               
               Cow position:chr5:66581803-66582181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:275
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):73, 146

               
               
               Conread position:102-249
               
               
               Cow position:chr5:44673526-44673678 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:117
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:102-398
               
               
               Cow position:chr5:3582415-3582699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:221
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):18, 60

               
               
               Conread position:103-256
               
               
               Cow position:chr5:44849879-44849730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:156
               
               
               Alignm identity:123
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):74, 36

               
               
               Conread position:103-318
               
               
               Cow position:chr5:23866317-23866112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:103-363
               
               
               Cow position:chr5:67540360-67540095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:189
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):10, 158

               
               
               Conread position:103-399
               
               
               Cow position:chr5:42050391-42050691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 123

               
               
               Conread position:104-247
               
               
               Cow position:chr5:51919517-51919659 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):67, 87

               
               
               Conread position:104-251
               
               
               Cow position:chr5:17921416-17921564 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:104-331
               
               
               Cow position:chr5:55750407-55750192 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:165
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):64, 130

               
               
               Conread position:104-349
               
               
               Cow position:chr5:36856674-36856431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):65, 36

               
               
               Conread position:104-364
               
               
               Cow position:chr5:54048504-54048246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:185
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):65, 41

               
               
               Conread position:104-507
               
               
               Cow position:chr5:44726483-44726083 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:409
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 156

               
               
               Conread position:106-355
               
               
               Cow position:chr5:32673211-32672969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):63, 9

               
               
               Conread position:107-406
               
               
               Cow position:chr5:56877336-56877627 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):227, 73

               
               
               Conread position:108-392
               
               
               Cow position:chr5:72951688-72951977 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:207
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:108-404
               
               
               Cow position:chr5:35459446-35459150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):33, 66

               
               
               Conread position:109-349
               
               
               Cow position:chr5:61809834-61809596 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):61, 5

               
               
               Conread position:109-398
               
               
               Cow position:chr5:55955760-55956051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:215
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):131, 5

               
               
               Conread position:109-415
               
               
               Cow position:chr5:12673610-12673324 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:227
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:110-351
               
               
               Cow position:chr5:12761265-12761026 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):58, 47

               
               
               Conread position:112-312
               
               
               Cow position:chr5:51801117-51800919 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:114-216
               
               
               Cow position:chr5:54750691-54750794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:104
               
               
               Alignm identity:87
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:114-264
               
               
               Cow position:chr5:37068750-37068897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:118
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):130, 58

               
               
               Conread position:114-332
               
               
               Cow position:chr5:50972385-50972599 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):54, 107

               
               
               Conread position:114-344
               
               
               Cow position:chr5:39182056-39181831 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):78, 99

               
               
               Conread position:114-355
               
               
               Cow position:chr5:63865650-63865891 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:184
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):137, 205

               
               
               Conread position:114-364
               
               
               Cow position:chr5:65883921-65883666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:114-397
               
               
               Cow position:chr5:70952021-70951751 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:207
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):145, 0

               
               
               Conread position:114-398
               
               
               Cow position:chr5:45574475-45574759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):8, 26

               
               
               Conread position:114-398
               
               
               Cow position:chr5:66972282-66972568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:203
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):64, 0

               
               
               Conread position:114-400
               
               
               Cow position:chr5:20422324-20422054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:212
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):261, 29

               
               
               Conread position:115-255
               
               
               Cow position:chr5:47721393-47721536 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:113
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):12, 129

               
               
               Conread position:115-412
               
               
               Cow position:chr5:49919782-49920079 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):56, 18

               
               
               Conread position:117-255
               
               
               Cow position:chr5:19294628-19294493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:117-304
               
               
               Cow position:chr5:7921542-7921359 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):134, 0

               
               
               Conread position:118-268
               
               
               Cow position:chr5:56334536-56334690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):7, 0

               
               
               Conread position:118-349
               
               
               Cow position:chr5:29097218-29097458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:118-398
               
               
               Cow position:chr5:61830010-61829725 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:195
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):51, 27

               
               
               Conread position:118-399
               
               
               Cow position:chr5:29844138-29844420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:190
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):125, 146

               
               
               Conread position:119-336
               
               
               Cow position:chr5:25447424-25447641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:120-341
               
               
               Cow position:chr5:991327-991546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:177
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:122-247
               
               
               Cow position:chr5:43844932-43844805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:103
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):78, 85

               
               
               Conread position:122-308
               
               
               Cow position:chr5:63763323-63763515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:195
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):52, 143

               
               
               Conread position:122-326
               
               
               Cow position:chr5:30134103-30133898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:146
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):48, 103

               
               
               Conread position:122-399
               
               
               Cow position:chr5:23529410-23529143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):136, 30

               
               
               Conread position:122-414
               
               
               Cow position:chr5:14473550-14473250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:215
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):45, 11

               
               
               Conread position:122-414
               
               
               Cow position:chr5:55259290-55259565 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):210, 50

               
               
               Conread position:123-351
               
               
               Cow position:chr5:36624097-36624341 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:181
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):46, 77

               
               
               Conread position:123-359
               
               
               Cow position:chr5:50857801-50858034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-26
               
               
               Alignm gaps (pig, cow):194, 56

               
               
               Conread position:123-398
               
               
               Cow position:chr5:64027144-64026880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:203
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):130, 0

               
               
               Conread position:124-298
               
               
               Cow position:chr5:38647224-38647394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:175
               
               
               Alignm identity:138
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:124-421
               
               
               Cow position:chr5:64592227-64591935 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):132, 28

               
               
               Conread position:125-299
               
               
               Cow position:chr5:63913830-63913650 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 0

               
               
               Conread position:125-311
               
               
               Cow position:chr5:69047496-69047312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):57, 37

               
               
               Conread position:125-345
               
               
               Cow position:chr5:50684123-50684342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:160
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 84

               
               
               Conread position:125-398
               
               
               Cow position:chr5:18288995-18289261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:194
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):43, 130

               
               
               Conread position:125-398
               
               
               Cow position:chr5:44447002-44446726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):128, 0

               
               
               Conread position:125-398
               
               
               Cow position:chr5:57419925-57419655 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:189
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):38, 13

               
               
               Conread position:125-406
               
               
               Cow position:chr5:57101910-57101638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:290
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):33, 69

               
               
               Conread position:126-414
               
               
               Cow position:chr5:22666960-22667225 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:212
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):71, 0

               
               
               Conread position:127-351
               
               
               Cow position:chr5:45273633-45273409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:166
               
               
               Alignm E-value:4e-39
               
               
               Alignm gaps (pig, cow):51, 131

               
               
               Conread position:127-376
               
               
               Cow position:chr5:59717616-59717853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):203, 68

               
               
               Conread position:127-494
               
               
               Cow position:chr5:54768042-54767665 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 156

               
               
               Conread position:128-326
               
               
               Cow position:chr5:34483666-34483466 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):67, 48

               
               
               Conread position:128-353
               
               
               Cow position:chr5:33552539-33552329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:165
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:128-415
               
               
               Cow position:chr5:64140399-64140694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:194
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):39, 78

               
               
               Conread position:129-503
               
               
               Cow position:chr5:7057537-7057170 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:253
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):13, 121

               
               
               Conread position:130-299
               
               
               Cow position:chr5:41227113-41226944 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):39, 116

               
               
               Conread position:131-364
               
               
               Cow position:chr5:58490589-58490835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:180
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 80

               
               
               Conread position:131-408
               
               
               Cow position:chr5:49474670-49474397 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):90, 14

               
               
               Conread position:132-284
               
               
               Cow position:chr5:34467224-34467072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:111
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):37, 119

               
               
               Conread position:132-354
               
               
               Cow position:chr5:60747403-60747185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):114, 21

               
               
               Conread position:132-412
               
               
               Cow position:chr5:12434409-12434694 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:208
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):111, 19

               
               
               Conread position:133-315
               
               
               Cow position:chr5:64181701-64181519 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:133
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 105

               
               
               Conread position:133-351
               
               
               Cow position:chr5:19335913-19335689 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):34, 154

               
               
               Conread position:133-439
               
               
               Cow position:chr5:56680121-56680434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):35, 287

               
               
               Conread position:137-339
               
               
               Cow position:chr5:50799418-50799614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):114, 73

               
               
               Conread position:138-423
               
               
               Cow position:chr5:12557410-12557125 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):105, 10

               
               
               Conread position:140-395
               
               
               Cow position:chr5:16179644-16179375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:191
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):34, 58

               
               
               Conread position:140-498
               
               
               Cow position:chr5:49440991-49440630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 72

               
               
               Conread position:141-351
               
               
               Cow position:chr5:19523779-19523992 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:142-358
               
               
               Cow position:chr5:6891135-6890921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:149
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):117, 162

               
               
               Conread position:142-414
               
               
               Cow position:chr5:33560851-33560581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:188
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):29, 118

               
               
               Conread position:142-415
               
               
               Cow position:chr5:766716-766983 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:186
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):31, 104

               
               
               Conread position:144-504
               
               
               Cow position:chr5:12901800-12902147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):30, 130

               
               
               Conread position:145-351
               
               
               Cow position:chr5:38076597-38076391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):29, 46

               
               
               Conread position:146-355
               
               
               Cow position:chr5:57561404-57561619 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:146-397
               
               
               Cow position:chr5:4927680-4927427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:167
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):49, 181

               
               
               Conread position:146-468
               
               
               Cow position:chr5:13717684-13717362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:229
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):28, 120

               
               
               Conread position:146-494
               
               
               Cow position:chr5:60599298-60598969 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:239
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):26, 38

               
               
               Conread position:147-386
               
               
               Cow position:chr5:42670968-42670737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:179
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):161, 39

               
               
               Conread position:147-398
               
               
               Cow position:chr5:7697893-7698139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):208, 106

               
               
               Conread position:147-408
               
               
               Cow position:chr5:60016055-60016313 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:193
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):107, 118

               
               
               Conread position:147-494
               
               
               Cow position:chr5:58446691-58447046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:239
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):76, 297

               
               
               Conread position:148-307
               
               
               Cow position:chr5:55849854-55849696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):94, 116

               
               
               Conread position:149-309
               
               
               Cow position:chr5:60448105-60448266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):25, 128

               
               
               Conread position:149-400
               
               
               Cow position:chr5:60183691-60183946 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:196
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):100, 0

               
               
               Conread position:149-515
               
               
               Cow position:chr5:23678814-23678439 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:264
               
               
               Alignm E-value:6.02558e-44
               
               
               Alignm gaps (pig, cow):25, 179

               
               
               Conread position:150-351
               
               
               Cow position:chr5:35125945-35126147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):96, 9

               
               
               Conread position:150-404
               
               
               Cow position:chr5:14921039-14920784 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:184
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):103, 75

               
               
               Conread position:152-351
               
               
               Cow position:chr5:43371305-43371103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:149
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):21, 133

               
               
               Conread position:152-367
               
               
               Cow position:chr5:56635793-56636003 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:160
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):22, 69

               
               
               Conread position:153-351
               
               
               Cow position:chr5:64168346-64168147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:145
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):20, 174

               
               
               Conread position:153-354
               
               
               Cow position:chr5:31475575-31475777 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:143
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):16, 100

               
               
               Conread position:153-399
               
               
               Cow position:chr5:48945368-48945114 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:174
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):16, 200

               
               
               Conread position:153-503
               
               
               Cow position:chr5:41293974-41294325 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:249
               
               
               Alignm E-value:1.99965e-42
               
               
               Alignm gaps (pig, cow):21, 113

               
               
               Conread position:154-360
               
               
               Cow position:chr5:53946790-53946998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:154-412
               
               
               Cow position:chr5:62378686-62378931 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:259
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):90, 0

               
               
               Conread position:155-397
               
               
               Cow position:chr5:54375611-54375364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:156-355
               
               
               Cow position:chr5:22188558-22188767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:210
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:156-399
               
               
               Cow position:chr5:36039107-36038861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 51

               
               
               Conread position:156-403
               
               
               Cow position:chr5:35785079-35784845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:171
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):18, 42

               
               
               Conread position:158-412
               
               
               Cow position:chr5:36650448-36650708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):11, 228

               
               
               Conread position:159-421
               
               
               Cow position:chr5:73418382-73418129 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:187
               
               
               Alignm E-value:8e-36
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:160-403
               
               
               Cow position:chr5:55019194-55019436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:170
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):19, 65

               
               
               Conread position:161-404
               
               
               Cow position:chr5:17555126-17554888 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):103, 14

               
               
               Conread position:161-478
               
               
               Cow position:chr5:64555432-64555730 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:215
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):21, 11

               
               
               Conread position:162-351
               
               
               Cow position:chr5:33833948-33834134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:132
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:162-500
               
               
               Cow position:chr5:30232802-30233134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:3e-36
               
               
               Alignm gaps (pig, cow):40, 212

               
               
               Conread position:167-395
               
               
               Cow position:chr5:35976429-35976646 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:167-403
               
               
               Cow position:chr5:50575693-50575926 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:167-414
               
               
               Cow position:chr5:59384782-59384535 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):64, 117

               
               
               Conread position:167-437
               
               
               Cow position:chr5:1087288-1087023 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):253, 36

               
               
               Conread position:168-526
               
               
               Cow position:chr5:61912403-61912039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):80, 89

               
               
               Conread position:173-398
               
               
               Cow position:chr5:61771028-61771258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):129, 77

               
               
               Conread position:176-398
               
               
               Cow position:chr5:17602281-17602066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:164
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):44, 18

               
               
               Conread position:176-407
               
               
               Cow position:chr5:43402817-43403053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:179
               
               
               Alignm E-value:4.99983e-42
               
               
               Alignm gaps (pig, cow):77, 208

               
               
               Conread position:178-415
               
               
               Cow position:chr5:66551980-66551742 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:169
               
               
               Alignm E-value:6e-33
               
               
               Alignm gaps (pig, cow):87, 220

               
               
               Conread position:179-385
               
               
               Cow position:chr5:57640049-57639849 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):7, 104

               
               
               Conread position:180-355
               
               
               Cow position:chr5:19752226-19752398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):60, 44

               
               
               Conread position:180-410
               
               
               Cow position:chr5:69636156-69636375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:167
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):72, 0

               
               
               Conread position:181-351
               
               
               Cow position:chr5:37893255-37893426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:172
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:181-509
               
               
               Cow position:chr5:29912341-29912671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:232
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):75, 33

               
               
               Conread position:183-404
               
               
               Cow position:chr5:30805092-30805307 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:153
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:188-397
               
               
               Cow position:chr5:63234897-63234691 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:146
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):70, 115

               
               
               Conread position:190-406
               
               
               Cow position:chr5:72006561-72006344 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):63, 25

               
               
               Conread position:196-384
               
               
               Cow position:chr5:26150484-26150296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):57, 125

               
               
               Conread position:197-392
               
               
               Cow position:chr5:1461025-1461222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:139
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:197-400
               
               
               Cow position:chr5:63150229-63150028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:197-415
               
               
               Cow position:chr5:59627036-59626816 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:176
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):56, 179

               
               
               Conread position:198-414
               
               
               Cow position:chr5:45420195-45419984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:217
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-31
               
               
               Alignm gaps (pig, cow):60, 0

               
               
               Conread position:202-415
               
               
               Cow position:chr5:40241985-40242198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:154
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):48, 147

               
               
               Conread position:203-398
               
               
               Cow position:chr5:56339074-56338882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:205-386
               
               
               Cow position:chr5:14345149-14344972 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:5e-21
               
               
               Alignm gaps (pig, cow):56, 38

               
               
               Conread position:206-522
               
               
               Cow position:chr5:24136660-24136981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):44, 60

               
               
               Conread position:207-511
               
               
               Cow position:chr5:43408411-43408105 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):57, 76

               
               
               Conread position:210-398
               
               
               Cow position:chr5:67118369-67118559 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:212-518
               
               
               Cow position:chr5:58555093-58555395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:201
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):50, 19

               
               
               Conread position:213-353
               
               
               Cow position:chr5:63192788-63192647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:113
               
               
               Alignm E-value:1e-27
               
               
               Alignm gaps (pig, cow):51, 114

               
               
               Conread position:214-398
               
               
               Cow position:chr5:56517057-56517243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):52, 113

               
               
               Conread position:216-397
               
               
               Cow position:chr5:55796008-55795828 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):111, 38

               
               
               Conread position:216-415
               
               
               Cow position:chr5:69099675-69099875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):49, 187

               
               
               Conread position:218-510
               
               
               Cow position:chr5:49342090-49341801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:203
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 13

               
               
               Conread position:219-363
               
               
               Cow position:chr5:31052345-31052484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:145
               
               
               Alignm identity:111
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:219-412
               
               
               Cow position:chr5:66530877-66531072 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:140
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):46, 135

               
               
               Conread position:219-421
               
               
               Cow position:chr5:35982781-35982574 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:208
               
               
               Alignm identity:157
               
               
               Alignm E-value:9e-37
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:220-421
               
               
               Cow position:chr5:61102675-61102878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):31, 74

               
               
               Conread position:220-513
               
               
               Cow position:chr5:20288303-20288024 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:213
               
               
               Alignm E-value:7e-35
               
               
               Alignm gaps (pig, cow):42, 192

               
               
               Conread position:223-517
               
               
               Cow position:chr5:24069362-24069652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:206
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):61, 9

               
               
               Conread position:224-398
               
               
               Cow position:chr5:57686776-57686598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:129
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:224-420
               
               
               Cow position:chr5:22795178-22795375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-27
               
               
               Alignm gaps (pig, cow):29, 103

               
               
               Conread position:225-415
               
               
               Cow position:chr5:49501859-49501668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:226-412
               
               
               Cow position:chr5:26549175-26548986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:138
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:231-404
               
               
               Cow position:chr5:57230368-57230194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:126
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):29, 166

               
               
               Conread position:246-411
               
               
               Cow position:chr5:17104839-17105000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 35

               
               
               Conread position:247-414
               
               
               Cow position:chr5:9170593-9170431 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:122
               
               
               Alignm E-value:6e-23
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:249-397
               
               
               Cow position:chr5:69383246-69383392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:250-411
               
               
               Cow position:chr5:74974336-74974179 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:118
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:250-414
               
               
               Cow position:chr5:9233999-9233835 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:127
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 146

               
               
               Conread position:256-398
               
               
               Cow position:chr5:34915056-34914914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:257-384
               
               
               Cow position:chr5:21223322-21223448 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):99, 24

               
               
               Conread position:258-415
               
               
               Cow position:chr5:38168893-38169049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:159
               
               
               Alignm identity:119
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):113, 137

               
               
               Conread position:261-399
               
               
               Cow position:chr5:50824594-50824732 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:139
               
               
               Alignm identity:110
               
               
               Alignm E-value:4e-29
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:265-384
               
               
               Cow position:chr5:12169762-12169644 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:120
               
               
               Alignm identity:96
               
               
               Alignm E-value:7e-24
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:271-399
               
               
               Cow position:chr5:35647355-35647483 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:97
               
               
               Alignm E-value:2e-21
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:271-415
               
               
               Cow position:chr5:46704287-46704144 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:146
               
               
               Alignm identity:113
               
               
               Alignm E-value:8e-26
               
               
               Alignm gaps (pig, cow):105, 96

               
               
               Conread position:283-531
               
               
               Cow position:chr5:60596107-60595861 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:177
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):58, 42

               
               
               Conread position:289-500
               
               
               Cow position:chr5:38647670-38647880 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):191, 111
Show alignments to all cow chromosomes.
Conread position:	1-110
Cow position:	chr5:12867108-12866998 (view UCSC Genome Browser custom track)
Alignm length:	111
Alignm identity:	91
Alignm E-value:	2e-23
Alignm gaps (pig, cow):	55, 0
Conread position:	1-135
Cow position:	chr5:75259569-75259704 (view UCSC Genome Browser custom track)
Alignm length:	136
Alignm identity:	102
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	57, 0
Conread position:	1-148
Cow position:	chr5:39284540-39284388 (view UCSC Genome Browser custom track)
Alignm length:	153
Alignm identity:	113
Alignm E-value:	5e-21
Alignm gaps (pig, cow):	52, 0
Conread position:	1-157
Cow position:	chr5:42671287-42671142 (view UCSC Genome Browser custom track)
Alignm length:	158
Alignm identity:	122
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	71, 24
Conread position:	1-167
Cow position:	chr5:52289513-52289685 (view UCSC Genome Browser custom track)
Alignm length:	173
Alignm identity:	126
Alignm E-value:	2e-24
Alignm gaps (pig, cow):	55, 0
Conread position:	1-168
Cow position:	chr5:27011035-27011206 (view UCSC Genome Browser custom track)
Alignm length:	173
Alignm identity:	134
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	50, 75
Conread position:	1-169
Cow position:	chr5:31437269-31437101 (view UCSC Genome Browser custom track)
Alignm length:	170
Alignm identity:	122
Alignm E-value:	7e-24
Alignm gaps (pig, cow):	95, 89
Conread position:	1-170
Cow position:	chr5:4353756-4353931 (view UCSC Genome Browser custom track)
Alignm length:	177
Alignm identity:	132
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	54, 99
Conread position:	1-171
Cow position:	chr5:40269986-40269815 (view UCSC Genome Browser custom track)
Alignm length:	174
Alignm identity:	129
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	51, 28
Conread position:	1-172
Cow position:	chr5:26058876-26059049 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	125
Alignm E-value:	5e-22
Alignm gaps (pig, cow):	125, 55
Conread position:	1-173
Cow position:	chr5:46080515-46080343 (view UCSC Genome Browser custom track)
Alignm length:	176
Alignm identity:	136
Alignm E-value:	2e-31
Alignm gaps (pig, cow):	125, 142
Conread position:	1-174
Cow position:	chr5:19969291-19969113 (view UCSC Genome Browser custom track)
Alignm length:	179
Alignm identity:	149
Alignm E-value:	2.00386e-43
Alignm gaps (pig, cow):	56, 0
Conread position:	1-175
Cow position:	chr5:57494674-57494493 (view UCSC Genome Browser custom track)
Alignm length:	182
Alignm identity:	141
Alignm E-value:	6e-33
Alignm gaps (pig, cow):	56, 0
Conread position:	1-177
Cow position:	chr5:52269445-52269267 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	136
Alignm E-value:	1e-29
Alignm gaps (pig, cow):	51, 115
Conread position:	1-179
Cow position:	chr5:73070188-73070365 (view UCSC Genome Browser custom track)
Alignm length:	181
Alignm identity:	132
Alignm E-value:	8e-26
Alignm gaps (pig, cow):	56, 123
Conread position:	1-182
Cow position:	chr5:60947959-60948143 (view UCSC Genome Browser custom track)
Alignm length:	186
Alignm identity:	145
Alignm E-value:	8e-36
Alignm gaps (pig, cow):	55, 114
Conread position:	1-185
Cow position:	chr5:46708921-46709112 (view UCSC Genome Browser custom track)
Alignm length:	193
Alignm identity:	137
Alignm E-value:	2e-21
Alignm gaps (pig, cow):	21, 80
Conread position:	1-186
Cow position:	chr5:58548627-58548442 (view UCSC Genome Browser custom track)
Alignm length:	187
Alignm identity:	135
Alignm E-value:	3e-28
Alignm gaps (pig, cow):	51, 168
Conread position:	1-189
Cow position:	chr5:15362810-15363000 (view UCSC Genome Browser custom track)
Alignm length:	192
Alignm identity:	134
Alignm E-value:	6e-23
Alignm gaps (pig, cow):	56, 174
Conread position:	1-196
Cow position:	chr5:30176439-30176239 (view UCSC Genome Browser custom track)
Alignm length:	201
Alignm identity:	143
Alignm E-value:	9e-27
Alignm gaps (pig, cow):	55, 0