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Cow genome map

           
Conread name:
           
Ss1.1-Mixn-0038g14.5
        

               
Conread position:
               
1-152
               

               
Cow position:
               
chr6:68272374-68272217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
158
               

               
Alignm identity:
               
120
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-153
               

               
Cow position:
               
chr6:60274468-60274312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
122, 0
               

               
Conread position:
               
1-159
               

               
Cow position:
               
chr6:60516483-60516649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
27, 0
               

               
Conread position:
               
1-165
               

               
Cow position:
               
chr6:16397427-16397266 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
166
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
1-167
               

               
Cow position:
               
chr6:37487548-37487376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-168
               

               
Cow position:
               
chr6:59597412-59597585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:6167158-6167322 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
52, 35
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:11829921-11830097 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:14706660-14706490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
122
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
54, 91
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:38987918-38987750 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
171
               

               
Alignm identity:
               
127
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
50, 28
               

               
Conread position:
               
1-170
               

               
Cow position:
               
chr6:48468558-48468730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 114
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr6:12116297-12116123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
140
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
118, 65
               

               
Conread position:
               
1-172
               

               
Cow position:
               
chr6:41961210-41961037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
99, 57
               

               
Conread position:
               
1-180
               

               
Cow position:
               
chr6:53448803-53448988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-182
               

               
Cow position:
               
chr6:60467783-60467961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
182
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-184
               

               
Cow position:
               
chr6:5329910-5330090 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
187
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
168, 45
               

               
Conread position:
               
1-185
               

               
Cow position:
               
chr6:25784068-25784252 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
186
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 66
               

               
Conread position:
               
1-186
               

               
Cow position:
               
chr6:48794249-48794058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
137
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
67, 58
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:7801610-7801420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
118, 165
               

               
Conread position:
               
1-192
               

               
Cow position:
               
chr6:35769727-35769535 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
193
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
8e-37
               

               
Alignm gaps (pig, cow):
               
51, 0
               

               
Conread position:
               
1-195
               

               
Cow position:
               
chr6:57149200-57149001 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
150
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
50, 63
               

               
Conread position:
               
1-200
               

               
Cow position:
               
chr6:12845072-12845267 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
167, 103
               

               
Conread position:
               
1-201
               

               
Cow position:
               
chr6:1002479-1002277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
204
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 38
               

               
Conread position:
               
1-204
               

               
Cow position:
               
chr6:48421904-48421698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
207
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-210
               

               
Cow position:
               
chr6:59277185-59276968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
220
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
51, 77
               

               
Conread position:
               
1-214
               

               
Cow position:
               
chr6:43394424-43394640 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
147
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
55, 159
               

               
Conread position:
               
1-216
               

               
Cow position:
               
chr6:55608051-55607841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
169
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 141
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr6:24074811-24074586 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
226
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-220
               

               
Cow position:
               
chr6:46666861-46667087 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
12, 38
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr6:17111262-17111034 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
56, 16
               

               
Conread position:
               
1-224
               

               
Cow position:
               
chr6:65874200-65873973 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:6569876-6570103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
228
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:49627109-49627344 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
172
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
17, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:50120030-50119806 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 16
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:55903988-55904218 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-225
               

               
Cow position:
               
chr6:62331162-62330935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
125, 69
               

               
Conread position:
               
1-226
               

               
Cow position:
               
chr6:6596333-6596562 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
231
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
30, 59
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:1278756-1278528 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
159
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-227
               

               
Cow position:
               
chr6:19737432-19737664 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
49, 0
               

               
Conread position:
               
1-228
               

               
Cow position:
               
chr6:51296464-51296231 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
234
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
63, 0
               

               
Conread position:
               
1-229
               

               
Cow position:
               
chr6:64426946-64427173 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
232
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 18
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:40549796-40549561 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
236
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
61, 0
               

               
Conread position:
               
1-230
               

               
Cow position:
               
chr6:62592805-62592569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
59, 0
               

               
Conread position:
               
1-234
               

               
Cow position:
               
chr6:54218427-54218665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
123, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:2833120-2832883 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
173
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:7216587-7216822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
55, 220
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:19719475-19719720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
47, 0
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:22507501-22507732 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
68, 64
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:25822248-25822013 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
160
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
168, 132
               

               
Conread position:
               
1-236
               

               
Cow position:
               
chr6:40320437-40320679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
243
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-238
               

               
Cow position:
               
chr6:9733076-9732850 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 107
               

               
Conread position:
               
1-241
               

               
Cow position:
               
chr6:10605439-10605684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
12, 177
               

               
Conread position:
               
1-243
               

               
Cow position:
               
chr6:24327380-24327143 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 63
               

               
Conread position:
               
1-247
               

               
Cow position:
               
chr6:12927875-12928121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
55, 124
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:2012774-2013022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:46161769-46161520 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
56, 191
               

               
Conread position:
               
1-248
               

               
Cow position:
               
chr6:61575359-61575612 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 70
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr6:1174746-1174481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
99, 26
               

               
Conread position:
               
1-249
               

               
Cow position:
               
chr6:54293866-54294112 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
251
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
53, 135
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:12934385-12934131 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
46, 140
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:44510990-44511249 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
30, 221
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:45617685-45617430 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
257
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
50, 176
               

               
Conread position:
               
1-250
               

               
Cow position:
               
chr6:69500085-69500329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 90
               

               
Conread position:
               
1-251
               

               
Cow position:
               
chr6:58594356-58594102 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
17, 157
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:12387565-12387318 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
191, 28
               

               
Conread position:
               
1-252
               

               
Cow position:
               
chr6:32916165-32915916 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 121
               

               
Conread position:
               
1-254
               

               
Cow position:
               
chr6:55538368-55538115 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
16, 20
               

               
Conread position:
               
1-255
               

               
Cow position:
               
chr6:875570-875309 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
262
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr6:31879615-31879371 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
91, 27
               

               
Conread position:
               
1-257
               

               
Cow position:
               
chr6:54806978-54807240 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
54, 242
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:30285444-30285705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
30, 46
               

               
Conread position:
               
1-263
               

               
Cow position:
               
chr6:47625204-47624945 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
63, 55
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:19570030-19569766 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 24
               

               
Conread position:
               
1-264
               

               
Cow position:
               
chr6:42693118-42693398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
25, 57
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr6:56441175-56440906 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 259
               

               
Conread position:
               
1-265
               

               
Cow position:
               
chr6:57309126-57309395 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
6e-24
               

               
Alignm gaps (pig, cow):
               
55, 259
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:30016112-30015842 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
50, 243
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:39998576-39998304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:40357972-40357700 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:45775642-45775379 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
267
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
167, 126
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:46628223-46627950 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
61, 262
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:47674878-47675147 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
125, 258
               

               
Conread position:
               
1-266
               

               
Cow position:
               
chr6:60877200-60877469 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
80, 243
               

               
Conread position:
               
1-267
               

               
Cow position:
               
chr6:2185597-2185330 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 241
               

               
Conread position:
               
1-268
               

               
Cow position:
               
chr6:54647768-54647498 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
273
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
8, 116
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr6:2110362-2110085 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 242
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr6:15137265-15136992 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
276
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
56, 84
               

               
Conread position:
               
1-271
               

               
Cow position:
               
chr6:27526101-27525824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
1-274
               

               
Cow position:
               
chr6:10598881-10599146 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
275
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
55, 32
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr6:28343406-28343677 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
70, 33
               

               
Conread position:
               
1-275
               

               
Cow position:
               
chr6:68830199-68830482 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
50, 45
               

               
Conread position:
               
1-277
               

               
Cow position:
               
chr6:10459492-10459767 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
70, 32
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:9375619-9375342 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
287
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
50, 213
               

               
Conread position:
               
1-278
               

               
Cow position:
               
chr6:16410951-16411224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
224
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
166, 136
               

               
Conread position:
               
1-280
               

               
Cow position:
               
chr6:16518101-16517837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
285
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
126, 58
               

               
Conread position:
               
1-281
               

               
Cow position:
               
chr6:67544537-67544260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
284
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 138
               

               
Conread position:
               
1-290
               

               
Cow position:
               
chr6:20231070-20230781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
296
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 70
               

               
Conread position:
               
1-292
               

               
Cow position:
               
chr6:46205773-46206060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
87, 109
               

               
Conread position:
               
1-296
               

               
Cow position:
               
chr6:60456586-60456880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
55, 14
               

               
Conread position:
               
1-297
               

               
Cow position:
               
chr6:66566211-66566509 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
122, 242
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:5958261-5957975 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 62
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:6614190-6614490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
305
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
56, 33
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:13741452-13741754 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
222
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 23
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:16737776-16738072 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
223
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 179
               

               
Conread position:
               
1-298
               

               
Cow position:
               
chr6:23986981-23986692 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
16, 110
               

               
Conread position:
               
1-299
               

               
Cow position:
               
chr6:47540281-47540585 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 203
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr6:8527051-8527355 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
1-300
               

               
Cow position:
               
chr6:37736825-37737129 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 259
               

               
Conread position:
               
1-301
               

               
Cow position:
               
chr6:59688547-59688243 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
203
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
123, 99
               

               
Conread position:
               
1-304
               

               
Cow position:
               
chr6:66304086-66303781 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
311
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
159, 55
               

               
Conread position:
               
1-305
               

               
Cow position:
               
chr6:47150534-47150852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 0
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:24652425-24652127 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
57, 22
               

               
Conread position:
               
1-312
               

               
Cow position:
               
chr6:28148602-28148902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
213
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
25, 37
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr6:642822-642496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 244
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr6:12623226-12623530 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 63
               

               
Conread position:
               
1-317
               

               
Cow position:
               
chr6:49410929-49410625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
243
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 65
               

               
Conread position:
               
1-319
               

               
Cow position:
               
chr6:44372188-44371871 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
321
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 139
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:2668553-2668232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
327
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
50, 134
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:11772156-11771829 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
217
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 12
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:16417786-16417461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
50, 215
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:26413137-26413460 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
168, 138
               

               
Conread position:
               
1-324
               

               
Cow position:
               
chr6:53740196-53740525 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
215
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
103, 261
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr6:17248487-17248798 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
30, 92
               

               
Conread position:
               
1-325
               

               
Cow position:
               
chr6:22788210-22788539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
331
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
50, 260
               

               
Conread position:
               
1-326
               

               
Cow position:
               
chr6:1273602-1273277 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
216
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
1-327
               

               
Cow position:
               
chr6:20451862-20452190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
336
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 36
               

               
Conread position:
               
1-331
               

               
Cow position:
               
chr6:67044725-67045038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
334
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2.00386e-43
               

               
Alignm gaps (pig, cow):
               
51, 92
               

               
Conread position:
               
1-335
               

               
Cow position:
               
chr6:607017-607353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
344
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 202
               

               
Conread position:
               
1-341
               

               
Cow position:
               
chr6:1944486-1944809 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
345
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
202, 55
               

               
Conread position:
               
1-342
               

               
Cow position:
               
chr6:62925238-62924899 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
347
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 30
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr6:1104294-1103942 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
55, 122
               

               
Conread position:
               
1-344
               

               
Cow position:
               
chr6:27851949-27851606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
349
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
1.4013e-45
               

               
Alignm gaps (pig, cow):
               
177, 142
               

               
Conread position:
               
1-346
               

               
Cow position:
               
chr6:43188648-43188997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
351
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
123, 242
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr6:6642833-6642506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
348
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
168, 56
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr6:15275336-15274990 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
227
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 242
               

               
Conread position:
               
1-347
               

               
Cow position:
               
chr6:48169700-48170040 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
250
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 109
               

               
Conread position:
               
1-348
               

               
Cow position:
               
chr6:6769032-6769383 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr6:18987972-18988312 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
232, 137
               

               
Conread position:
               
1-349
               

               
Cow position:
               
chr6:50423645-50423303 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
123, 66
               

               
Conread position:
               
1-350
               

               
Cow position:
               
chr6:52248382-52248025 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
21, 61
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:706899-707254 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:1770440-1770092 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 88
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:1817110-1816759 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
123, 177
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:3444915-3444564 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
54, 65
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:4948697-4949042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
55, 185
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:6181821-6181462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 290
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:8206092-8206446 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
55, 96
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:8562471-8562826 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 333
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:11288563-11288209 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
231
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
13, 237
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:11721023-11720668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
55, 257
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:12389854-12390204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
126, 46
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:17557130-17557487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
249
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
122, 252
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:20552348-20551994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 260
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:25218684-25219037 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
229
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 259
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:25789832-25789478 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
55, 252
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:28111933-28111582 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
125, 58
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:28172975-28173333 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
232
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 306
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:28276415-28276770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
50, 257
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:36532179-36532534 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
51, 243
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:38872625-38872273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
359
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
55, 188
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:40814267-40814623 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
235
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
50, 244
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:41193255-41193606 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
221
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
56, 89
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:41232366-41232718 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
123, 97
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:47039318-47038974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
41, 59
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:48281750-48282098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
263
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 214
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:49442845-49443197 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
364
               

               
Alignm identity:
               
241
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:50746732-50747103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
17, 94
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:51718460-51718815 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
55, 261
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:53178395-53178735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
260
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
131, 54
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:53401126-53401462 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 27
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:58747965-58748324 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
55, 290
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:60473889-60474236 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
356
               

               
Alignm identity:
               
258
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 192
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:62796262-62795897 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
237
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
56, 67
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:64721051-64721397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
233
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
126, 74
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:65844961-65845308 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
225
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
168, 123
               

               
Conread position:
               
1-351
               

               
Cow position:
               
chr6:66199541-66199888 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
54, 184
               

               
Conread position:
               
1-352
               

               
Cow position:
               
chr6:64449147-64449484 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
57, 82
               

               
Conread position:
               
1-353
               

               
Cow position:
               
chr6:12337740-12338101 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
167, 0
               

               
Conread position:
               
1-354
               

               
Cow position:
               
chr6:35181498-35181148 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 134
               

               
Conread position:
               
1-355
               

               
Cow position:
               
chr6:40713744-40713393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
357
               

               
Alignm identity:
               
252
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
134, 46
               

               
Conread position:
               
1-356
               

               
Cow position:
               
chr6:47650-47300 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
363
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
123, 33
               

               
Conread position:
               
1-357
               

               
Cow position:
               
chr6:58073798-58074160 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
19, 113
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr6:31535817-31535456 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 196
               

               
Conread position:
               
1-358
               

               
Cow position:
               
chr6:51835155-51835512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
362
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 133
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:13603222-13603587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
246
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
56, 114
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:34842804-34842442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
367
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
55, 242
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:57857635-57857997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
236
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
62, 55
               

               
Conread position:
               
1-359
               

               
Cow position:
               
chr6:67430134-67429764 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
251
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
57, 139
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr6:24902382-24902041 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
50, 22
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr6:47383756-47384121 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
369
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
55, 265
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr6:65676012-65676358 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
259
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
1-360
               

               
Cow position:
               
chr6:65711582-65711930 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
366
               

               
Alignm identity:
               
261
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 192
               

               
Conread position:
               
1-363
               

               
Cow position:
               
chr6:29210257-29210613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 38
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr6:14696617-14696245 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
379
               

               
Alignm identity:
               
271
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
64, 147
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr6:20951714-20952086 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
55, 265
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr6:23117644-23117275 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
372
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
52, 259
               

               
Conread position:
               
1-364
               

               
Cow position:
               
chr6:52431277-52430902 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
377
               

               
Alignm identity:
               
267
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 262
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr6:11789157-11789508 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
368
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
52, 158
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr6:16625703-16626069 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
375
               

               
Alignm identity:
               
254
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
244, 171
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr6:27870515-27870898 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
28, 120
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr6:56849773-56850139 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
373
               

               
Alignm identity:
               
266
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
1-365
               

               
Cow position:
               
chr6:57119172-57118822 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
244
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
52, 12
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr6:28811240-28810877 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
27, 190
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr6:31635932-31635563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 22
               

               
Conread position:
               
1-366
               

               
Cow position:
               
chr6:63197413-63197042 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
378
               

               
Alignm identity:
               
256
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
54, 14
               

               
Conread position:
               
1-369
               

               
Cow position:
               
chr6:55594147-55594512 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
374
               

               
Alignm identity:
               
248
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
56, 234
               

               
Conread position:
               
1-374
               

               
Cow position:
               
chr6:20329776-20330138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
380
               

               
Alignm identity:
               
265
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 201
               

               
Conread position:
               
1-384
               

               
Cow position:
               
chr6:37634545-37634935 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
291
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 43
               

               
Conread position:
               
1-385
               

               
Cow position:
               
chr6:55688796-55689165 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
392
               

               
Alignm identity:
               
268
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
126, 14
               

               
Conread position:
               
1-388
               

               
Cow position:
               
chr6:3575194-3575584 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
257
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
32, 120
               

               
Conread position:
               
1-395
               

               
Cow position:
               
chr6:34196393-34195999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
283
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 116
               

               
Conread position:
               
1-396
               

               
Cow position:
               
chr6:4864783-4864394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
401
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
42, 33
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr6:21534814-21535191 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 118
               

               
Conread position:
               
1-397
               

               
Cow position:
               
chr6:26728771-26728381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
106, 214
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:12500612-12501002 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
22, 150
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:18447753-18447365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
287
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 140
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:19681761-19681372 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
120, 20
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:21587666-21587278 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 218
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:32867451-32867066 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
301
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 165
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:40031949-40032343 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
404
               

               
Alignm identity:
               
299
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 58
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:63047331-63047745 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
415
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
52, 0
               

               
Conread position:
               
1-398
               

               
Cow position:
               
chr6:67187450-67187837 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
403
               

               
Alignm identity:
               
270
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
257, 46
               

               
Conread position:
               
1-399
               

               
Cow position:
               
chr6:17414698-17414291 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
410
               

               
Alignm identity:
               
307
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
58, 113
               

               
Conread position:
               
1-400
               

               
Cow position:
               
chr6:46570875-46571260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
400
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:12551023-12551427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 95
               

               
Conread position:
               
1-402
               

               
Cow position:
               
chr6:54132574-54132968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
408
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 12
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr6:32121666-32122067 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
313
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 215
               

               
Conread position:
               
1-404
               

               
Cow position:
               
chr6:38853903-38853500 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
411
               

               
Alignm identity:
               
316
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 191
               

               
Conread position:
               
1-406
               

               
Cow position:
               
chr6:36195969-36196368 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
312
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 207
               

               
Conread position:
               
1-407
               

               
Cow position:
               
chr6:11169463-11169863 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
416
               

               
Alignm identity:
               
297
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
103, 57
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:28482770-28483181 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
288
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 243
               

               
Conread position:
               
1-408
               

               
Cow position:
               
chr6:39358584-39358177 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
418
               

               
Alignm identity:
               
306
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
194, 18
               

               
Conread position:
               
1-411
               

               
Cow position:
               
chr6:47519806-47520219 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 47
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:8637030-8637447 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
419
               

               
Alignm identity:
               
327
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
54, 400
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:13688056-13687646 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
325
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 127
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:23695753-23696169 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
318
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
264, 126
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:46557813-46558224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
282
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
51, 42
               

               
Conread position:
               
1-412
               

               
Cow position:
               
chr6:61515442-61515026 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
422
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
125, 366
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr6:323555-323136 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
426
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
56, 211
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr6:2546998-2547425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
338
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
126, 58
               

               
Conread position:
               
1-414
               

               
Cow position:
               
chr6:18080759-18080346 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
280
               

               
Alignm E-value:
               
1e-38
               

               
Alignm gaps (pig, cow):
               
55, 247
               

               
Conread position:
               
1-415
               

               
Cow position:
               
chr6:65870779-65871204 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
321
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 357
               

               
Conread position:
               
1-420
               

               
Cow position:
               
chr6:3952280-3952691 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
420
               

               
Alignm identity:
               
289
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 0
               

               
Conread position:
               
1-421
               

               
Cow position:
               
chr6:42961612-42961190 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
432
               

               
Alignm identity:
               
300
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 218
               

               
Conread position:
               
1-423
               

               
Cow position:
               
chr6:35842416-35842835 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
433
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 35
               

               
Conread position:
               
1-437
               

               
Cow position:
               
chr6:6343181-6343620 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
446
               

               
Alignm identity:
               
324
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 236
               

               
Conread position:
               
1-475
               

               
Cow position:
               
chr6:33460843-33461315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
487
               

               
Alignm identity:
               
310
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
56, 119
               

               
Conread position:
               
1-481
               

               
Cow position:
               
chr6:52408907-52408419 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
496
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
42, 30
               

               
Conread position:
               
1-488
               

               
Cow position:
               
chr6:54980857-54981354 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
505
               

               
Alignm identity:
               
329
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
59, 252
               

               
Conread position:
               
1-500
               

               
Cow position:
               
chr6:55577921-55578425 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
511
               

               
Alignm identity:
               
311
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
55, 114
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr6:28791588-28792098 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
517
               

               
Alignm identity:
               
326
               

               
Alignm E-value:
               
3e-39
               

               
Alignm gaps (pig, cow):
               
55, 240
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr6:55040462-55039946 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
522
               

               
Alignm identity:
               
334
               

               
Alignm E-value:
               
9.99967e-42
               

               
Alignm gaps (pig, cow):
               
53, 243
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr6:55610480-55609988 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
513
               

               
Alignm identity:
               
323
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
59, 37
               

               
Conread position:
               
1-503
               

               
Cow position:
               
chr6:60057910-60057398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
357
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
30, 41
               

               
Conread position:
               
1-513
               

               
Cow position:
               
chr6:7131116-7130611 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
528
               

               
Alignm identity:
               
378
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
55, 119
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr6:15242591-15243089 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
526
               

               
Alignm identity:
               
372
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 37
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr6:40450525-40451029 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
523
               

               
Alignm identity:
               
320
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
128, 137
               

               
Conread position:
               
1-514
               

               
Cow position:
               
chr6:67214497-67215022 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
530
               

               
Alignm identity:
               
365
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
123, 107
               

               
Conread position:
               
1-515
               

               
Cow position:
               
chr6:33302165-33302649 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
527
               

               
Alignm identity:
               
356
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
63, 121
               

               
Conread position:
               
1-548
               

               
Cow position:
               
chr6:66363489-66362931 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
568
               

               
Alignm identity:
               
375
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 155
               

               
Conread position:
               
2-155
               

               
Cow position:
               
chr6:8599545-8599699 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
157
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
11, 115
               

               
Conread position:
               
2-162
               

               
Cow position:
               
chr6:32024582-32024420 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
128
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-169
               

               
Cow position:
               
chr6:16352563-16352398 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
129
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
39, 65
               

               
Conread position:
               
2-170
               

               
Cow position:
               
chr6:32858652-32858823 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
174
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
27, 156
               

               
Conread position:
               
2-171
               

               
Cow position:
               
chr6:6471017-6470845 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
176
               

               
Alignm identity:
               
130
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
20, 63
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr6:26837630-26837453 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
180
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
124, 54
               

               
Conread position:
               
2-177
               

               
Cow position:
               
chr6:37331722-37331893 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
177
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chr6:33865334-33865157 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
183
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
127, 62
               

               
Conread position:
               
2-180
               

               
Cow position:
               
chr6:38594749-38594569 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
181
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
12, 0
               

               
Conread position:
               
2-181
               

               
Cow position:
               
chr6:65260950-65260769 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
54, 100
               

               
Conread position:
               
2-192
               

               
Cow position:
               
chr6:28631551-28631356 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
196
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
124, 0
               

               
Conread position:
               
2-200
               

               
Cow position:
               
chr6:18497653-18497848 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
200
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
52, 22
               

               
Conread position:
               
2-206
               

               
Cow position:
               
chr6:10649262-10649063 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
49, 64
               

               
Conread position:
               
2-207
               

               
Cow position:
               
chr6:54357615-54357414 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
206
               

               
Alignm identity:
               
151
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
54, 0
               

               
Conread position:
               
2-218
               

               
Cow position:
               
chr6:57474136-57474353 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
156
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
65, 115
               

               
Conread position:
               
2-224
               

               
Cow position:
               
chr6:50454724-50454963 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
241
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
18, 81
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr6:3719252-3719018 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1.00053e-42
               

               
Alignm gaps (pig, cow):
               
50, 193
               

               
Conread position:
               
2-229
               

               
Cow position:
               
chr6:25358833-25359058 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
233
               

               
Alignm identity:
               
168
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
120, 57
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr6:180607-180375 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
124, 62
               

               
Conread position:
               
2-236
               

               
Cow position:
               
chr6:41161945-41161701 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
245
               

               
Alignm identity:
               
170
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
41, 0
               

               
Conread position:
               
2-241
               

               
Cow position:
               
chr6:65862442-65862684 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
249
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3.99931e-42
               

               
Alignm gaps (pig, cow):
               
49, 193
               

               
Conread position:
               
2-252
               

               
Cow position:
               
chr6:50446003-50445753 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
254
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
151, 61
               

               
Conread position:
               
2-266
               

               
Cow position:
               
chr6:24263022-24263292 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
12, 264
               

               
Conread position:
               
2-268
               

               
Cow position:
               
chr6:20255632-20255376 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
27, 90
               

               
Conread position:
               
2-275
               

               
Cow position:
               
chr6:65910231-65910505 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
192
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
49, 103
               

               
Conread position:
               
2-283
               

               
Cow position:
               
chr6:15046339-15046044 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
208
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
29, 124
               

               
Conread position:
               
2-312
               

               
Cow position:
               
chr6:58315803-58316116 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
319
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
16, 56
               

               
Conread position:
               
2-316
               

               
Cow position:
               
chr6:23426948-23427268 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
322
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
12, 260
               

               
Conread position:
               
2-324
               

               
Cow position:
               
chr6:3719740-3720068 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
330
               

               
Alignm identity:
               
219
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
54, 259
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr6:181637-181298 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
354
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
55, 131
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr6:48872451-48872103 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
353
               

               
Alignm identity:
               
228
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
60, 126
               

               
Conread position:
               
2-351
               

               
Cow position:
               
chr6:68252540-68252907 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
371
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
55, 254
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr6:32125823-32126164 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
255
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 144
               

               
Conread position:
               
2-354
               

               
Cow position:
               
chr6:57685915-57686258 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
355
               

               
Alignm identity:
               
239
               

               
Alignm E-value:
               
3e-38
               

               
Alignm gaps (pig, cow):
               
55, 120
               

               
Conread position:
               
2-384
               

               
Cow position:
               
chr6:56842916-56843293 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
386
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
245, 123
               

               
Conread position:
               
2-393
               

               
Cow position:
               
chr6:48567586-48567206 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
278
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
48, 127
               

               
Conread position:
               
2-396
               

               
Cow position:
               
chr6:35990465-35990083 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
397
               

               
Alignm identity:
               
286
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
315, 16
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr6:46465584-46465974 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
398
               

               
Alignm identity:
               
292
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
51, 126
               

               
Conread position:
               
2-398
               

               
Cow position:
               
chr6:50090397-50090795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
269
               

               
Alignm E-value:
               
4.00001e-41
               

               
Alignm gaps (pig, cow):
               
54, 15
               

               
Conread position:
               
2-399
               

               
Cow position:
               
chr6:55475006-55475409 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
177, 44
               

               
Conread position:
               
2-404
               

               
Cow position:
               
chr6:49398860-49398461 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
406
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 255
               

               
Conread position:
               
2-421
               

               
Cow position:
               
chr6:22332642-22332222 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
430
               

               
Alignm identity:
               
284
               

               
Alignm E-value:
               
9.99995e-41
               

               
Alignm gaps (pig, cow):
               
60, 54
               

               
Conread position:
               
2-425
               

               
Cow position:
               
chr6:53933084-53932670 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
429
               

               
Alignm identity:
               
294
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
135, 54
               

               
Conread position:
               
2-434
               

               
Cow position:
               
chr6:13564033-13564467 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
442
               

               
Alignm identity:
               
275
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
13, 260
               

               
Conread position:
               
2-474
               

               
Cow position:
               
chr6:40774597-40774104 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
504
               

               
Alignm identity:
               
343
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
14, 129
               

               
Conread position:
               
3-106
               

               
Cow position:
               
chr6:62015402-62015506 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
105
               

               
Alignm identity:
               
87
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
48, 0
               

               
Conread position:
               
3-163
               

               
Cow position:
               
chr6:1866440-1866590 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
163
               

               
Alignm identity:
               
124
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 106
               

               
Conread position:
               
3-166
               

               
Cow position:
               
chr6:53799123-53798959 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
167
               

               
Alignm identity:
               
121
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
53, 62
               

               
Conread position:
               
3-169
               

               
Cow position:
               
chr6:16492163-16491994 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
139
               

               
Alignm E-value:
               
2e-36
               

               
Alignm gaps (pig, cow):
               
53, 155
               

               
Conread position:
               
3-170
               

               
Cow position:
               
chr6:44906248-44906416 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
50, 26
               

               
Conread position:
               
3-171
               

               
Cow position:
               
chr6:11704955-11705125 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
173
               

               
Alignm identity:
               
125
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
53, 18
               

               
Conread position:
               
3-198
               

               
Cow position:
               
chr6:57777272-57777076 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
144
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
136, 15
               

               
Conread position:
               
3-201
               

               
Cow position:
               
chr6:14827083-14827283 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
202
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
55, 191
               

               
Conread position:
               
3-241
               

               
Cow position:
               
chr6:41152406-41152647 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
15, 57
               

               
Conread position:
               
3-246
               

               
Cow position:
               
chr6:40264440-40264199 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
246
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-39
               

               
Alignm gaps (pig, cow):
               
53, 122
               

               
Conread position:
               
3-248
               

               
Cow position:
               
chr6:32210871-32210625 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
248
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 113
               

               
Conread position:
               
3-257
               

               
Cow position:
               
chr6:57411403-57411645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
168, 87
               

               
Conread position:
               
3-258
               

               
Cow position:
               
chr6:33852026-33851784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
256
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
53, 0
               

               
Conread position:
               
3-262
               

               
Cow position:
               
chr6:9737355-9737100 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
117, 137
               

               
Conread position:
               
3-264
               

               
Cow position:
               
chr6:7312345-7312613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
31, 234
               

               
Conread position:
               
3-268
               

               
Cow position:
               
chr6:62479408-62479141 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
132, 240
               

               
Conread position:
               
3-275
               

               
Cow position:
               
chr6:8753552-8753273 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
191
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
53, 255
               

               
Conread position:
               
3-279
               

               
Cow position:
               
chr6:53710873-53711149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
214
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
15, 61
               

               
Conread position:
               
3-296
               

               
Cow position:
               
chr6:53345553-53345840 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
4.00001e-40
               

               
Alignm gaps (pig, cow):
               
49, 228
               

               
Conread position:
               
3-299
               

               
Cow position:
               
chr6:14839269-14838971 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
218
               

               
Alignm E-value:
               
1.96182e-44
               

               
Alignm gaps (pig, cow):
               
121, 61
               

               
Conread position:
               
3-311
               

               
Cow position:
               
chr6:5672986-5673313 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
329
               

               
Alignm identity:
               
234
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
53, 270
               

               
Conread position:
               
3-318
               

               
Cow position:
               
chr6:49706841-49706539 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
318
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
74, 115
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr6:16765635-16765290 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
352
               

               
Alignm identity:
               
242
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
59, 117
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr6:51246708-51247064 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
238
               

               
Alignm E-value:
               
6e-34
               

               
Alignm gaps (pig, cow):
               
54, 139
               

               
Conread position:
               
3-351
               

               
Cow position:
               
chr6:66235234-66235587 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
358
               

               
Alignm identity:
               
230
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
54, 66
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr6:6943920-6943568 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
365
               

               
Alignm identity:
               
247
               

               
Alignm E-value:
               
2e-35
               

               
Alignm gaps (pig, cow):
               
106, 14
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr6:51387523-51387862 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
360
               

               
Alignm identity:
               
240
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
122, 16
               

               
Conread position:
               
3-358
               

               
Cow position:
               
chr6:54365566-54365215 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
361
               

               
Alignm identity:
               
276
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
39, 62
               

               
Conread position:
               
3-365
               

               
Cow position:
               
chr6:18049268-18048904 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
370
               

               
Alignm identity:
               
264
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
165, 110
               

               
Conread position:
               
3-397
               

               
Cow position:
               
chr6:11192695-11192315 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
399
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
53, 115
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr6:222683-222304 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
407
               

               
Alignm identity:
               
281
               

               
Alignm E-value:
               
3e-37
               

               
Alignm gaps (pig, cow):
               
48, 133
               

               
Conread position:
               
3-398
               

               
Cow position:
               
chr6:5095797-5095389 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
298
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
24, 126
               

               
Conread position:
               
3-407
               

               
Cow position:
               
chr6:54991235-54990841 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
409
               

               
Alignm identity:
               
309
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
124, 56
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:6060800-6060403 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
414
               

               
Alignm identity:
               
290
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
49, 122
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:28148008-28148427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
425
               

               
Alignm identity:
               
285
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 30
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:50983965-50984394 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
435
               

               
Alignm identity:
               
296
               

               
Alignm E-value:
               
5.60519e-45
               

               
Alignm gaps (pig, cow):
               
53, 237
               

               
Conread position:
               
3-415
               

               
Cow position:
               
chr6:61269088-61269480 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
417
               

               
Alignm identity:
               
314
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
50, 11
               

               
Conread position:
               
3-520
               

               
Cow position:
               
chr6:21004413-21004937 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
547
               

               
Alignm identity:
               
370
               

               
Alignm E-value:
               
0
               

               
Alignm gaps (pig, cow):
               
56, 36
               

               
Conread position:
               
4-267
               

               
Cow position:
               
chr6:40449760-40449492 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
11, 258
               

               
Conread position:
               
4-275
               

               
Cow position:
               
chr6:1022535-1022811 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
20, 5
               

               
Conread position:
               
4-300
               

               
Cow position:
               
chr6:52022095-52021795 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 241
               

               
Conread position:
               
4-313
               

               
Cow position:
               
chr6:14886920-14886605 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 257
               

               
Conread position:
               
5-170
               

               
Cow position:
               
chr6:39797821-39797650 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
172
               

               
Alignm identity:
               
123
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-181
               

               
Cow position:
               
chr6:19843181-19843365 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
185
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr6:13597134-13596944 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
134
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr6:17364602-17364413 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
190
               

               
Alignm identity:
               
133
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-188
               

               
Cow position:
               
chr6:42731960-42732149 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
191
               

               
Alignm identity:
               
135
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
5-208
               

               
Cow position:
               
chr6:41835208-41835418 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
211
               

               
Alignm identity:
               
145
               

               
Alignm E-value:
               
2e-22
               

               
Alignm gaps (pig, cow):
               
8, 0
               

               
Conread position:
               
5-213
               

               
Cow position:
               
chr6:55289651-55289866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
216
               

               
Alignm identity:
               
148
               

               
Alignm E-value:
               
5e-23
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr6:26925632-26925415 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
218
               

               
Alignm identity:
               
146
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-216
               

               
Cow position:
               
chr6:43955460-43955678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
219
               

               
Alignm identity:
               
152
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-224
               

               
Cow position:
               
chr6:9742073-9742299 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
227
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-226
               

               
Cow position:
               
chr6:25217581-25217357 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
225
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:18911826-18911597 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:28000489-28000261 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
229
               

               
Alignm identity:
               
154
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
45, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:28293917-28293688 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:45723216-45722980 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
4e-21
               

               
Alignm gaps (pig, cow):
               
10, 62
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:45901085-45900856 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
157
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:46371688-46371459 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
158
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-227
               

               
Cow position:
               
chr6:58940464-58940237 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
230
               

               
Alignm identity:
               
155
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
9, 212
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:2389769-2389532 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
238
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:3095198-3094960 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:12972304-12972542 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
164
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:21254800-21255038 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
163
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:21712614-21712852 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
167
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 201
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:31548671-31548435 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
237
               

               
Alignm identity:
               
162
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:43389823-43390061 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
161
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-236
               

               
Cow position:
               
chr6:53052487-53052725 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
239
               

               
Alignm identity:
               
165
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-237
               

               
Cow position:
               
chr6:13605471-13605232 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
240
               

               
Alignm identity:
               
166
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr6:11097714-11097968 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-252
               

               
Cow position:
               
chr6:29077486-29077735 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
252
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
5.00264e-43
               

               
Alignm gaps (pig, cow):
               
13, 204
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr6:39088530-39088784 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
255
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr6:57522083-57522340 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
258
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-255
               

               
Cow position:
               
chr6:65863232-65863490 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
175
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 226
               

               
Conread position:
               
5-256
               

               
Cow position:
               
chr6:60066231-60066489 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
260
               

               
Alignm identity:
               
174
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
11, 201
               

               
Conread position:
               
5-259
               

               
Cow position:
               
chr6:60152794-60153051 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
261
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
9e-38
               

               
Alignm gaps (pig, cow):
               
8, 171
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:1911076-1911338 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:10013705-10013967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:10865848-10866110 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:20580871-20580609 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:25410364-25410626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:41798547-41798285 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-261
               

               
Cow position:
               
chr6:46607601-46607339 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
264
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-264
               

               
Cow position:
               
chr6:28486753-28486487 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
11, 67
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:2090166-2090433 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:3153120-3153385 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 225
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:7466743-7466477 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 208
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:10107407-10107674 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:11020566-11020833 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 259
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:11402227-11402494 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:11869029-11868762 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 203
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:12662422-12662155 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
11, 257
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:12947596-12947329 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:16645779-16646046 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:23849933-23849668 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
181
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 196
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:23879151-23878880 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 205
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:31520346-31520613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
8, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:33489327-33489060 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:40278960-40279227 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:43921544-43921804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
265
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
10, 121
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:44146041-44145773 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
10, 35
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:46948720-46948986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
184
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:53542561-53542295 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
268
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
10, 255
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:54202136-54201870 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 208
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:54886707-54886442 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
178
               

               
Alignm E-value:
               
2e-23
               

               
Alignm gaps (pig, cow):
               
10, 233
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:55239598-55239866 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:61629946-61629678 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
176
               

               
Alignm E-value:
               
5e-22
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:67554138-67554406 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
270
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 258
               

               
Conread position:
               
5-266
               

               
Cow position:
               
chr6:68340041-68339775 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
269
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 145
               

               
Conread position:
               
5-267
               

               
Cow position:
               
chr6:3157468-3157198 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
271
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-268
               

               
Cow position:
               
chr6:20215488-20215217 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
272
               

               
Alignm identity:
               
180
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 0
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:7449403-7449679 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:11034349-11034073 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:11455897-11455621 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
183
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:18502906-18502630 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:21719022-21718748 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:24757590-24757319 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
274
               

               
Alignm identity:
               
179
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 103
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:28642984-28643260 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
185
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:28700657-28700381 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
182
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:31567941-31567665 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:36258862-36259138 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 68
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:45976407-45976683 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
279
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 57
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:47387254-47387531 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
280
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
10, 258
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:52482253-52482529 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
188
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:53271562-53271838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:59052326-59052602 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
189
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:62418772-62418496 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:64131548-64131824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
187
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-275
               

               
Cow position:
               
chr6:67818442-67818168 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
278
               

               
Alignm identity:
               
186
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr6:8207590-8207314 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
193
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-278
               

               
Cow position:
               
chr6:33863514-33863790 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
281
               

               
Alignm identity:
               
194
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 244
               

               
Conread position:
               
5-279
               

               
Cow position:
               
chr6:55582239-55581961 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
282
               

               
Alignm identity:
               
190
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 239
               

               
Conread position:
               
5-285
               

               
Cow position:
               
chr6:13619713-13619427 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
288
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-33
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-287
               

               
Cow position:
               
chr6:3936305-3936594 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
297
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
7e-36
               

               
Alignm gaps (pig, cow):
               
99, 49
               

               
Conread position:
               
5-295
               

               
Cow position:
               
chr6:41470825-41471123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
299
               

               
Alignm identity:
               
171
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 0
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:444020-443719 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:508406-508707 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:1957013-1956713 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 240
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:5366927-5366626 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
3e-27
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:6557779-6558080 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:6578016-6577715 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:10536031-10535730 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:13531572-13531873 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:14388818-14388517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:15881916-15881616 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-28
               

               
Alignm gaps (pig, cow):
               
9, 181
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:17935268-17934967 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:18418694-18418393 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:18649006-18648705 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 253
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:19819352-19819651 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
7e-25
               

               
Alignm gaps (pig, cow):
               
9, 228
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:20174290-20174591 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:25207344-25207645 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
196
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:25363459-25363760 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:27173749-27174053 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
195
               

               
Alignm E-value:
               
1e-21
               

               
Alignm gaps (pig, cow):
               
10, 259
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:27541469-27541770 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:34016815-34016514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:37217526-37217827 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:38053647-38053948 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:38917131-38916830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:41822929-41822628 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:43430105-43429804 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
1e-28
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:43604529-43604830 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:43896914-43896613 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:45694769-45695070 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:45751841-45752142 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:45765213-45764912 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:46637940-46638241 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:49963255-49962958 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
197
               

               
Alignm E-value:
               
2e-24
               

               
Alignm gaps (pig, cow):
               
9, 96
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:54899861-54900162 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:55361864-55362163 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 148
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:55721076-55721377 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
199
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:56808331-56808030 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:57796139-57795838 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
304
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 186
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:58761851-58762156 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 260
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:63178028-63178328 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:64337864-64337563 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-300
               

               
Cow position:
               
chr6:68871021-68870720 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
303
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
4e-30
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:126200-125894 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-32
               

               
Alignm gaps (pig, cow):
               
9, 157
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:595978-595672 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
9e-28
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:5280202-5279901 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
307
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
4e-31
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:15776680-15776986 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:21164211-21164517 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
7e-26
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:22627820-22627514 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 201
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:31192569-31192262 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
309
               

               
Alignm identity:
               
200
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:32778771-32778465 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
202
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
9, 261
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:33884175-33883874 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
306
               

               
Alignm identity:
               
198
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 121
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:36901918-36902224 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:40710283-40710589 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
204
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-305
               

               
Cow position:
               
chr6:43049919-43050223 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
308
               

               
Alignm identity:
               
207
               

               
Alignm E-value:
               
5e-33
               

               
Alignm gaps (pig, cow):
               
9, 51
               

               
Conread position:
               
5-307
               

               
Cow position:
               
chr6:28674968-28674660 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
310
               

               
Alignm identity:
               
205
               

               
Alignm E-value:
               
1e-31
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr6:45211052-45211364 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
314
               

               
Alignm identity:
               
177
               

               
Alignm E-value:
               
8e-27
               

               
Alignm gaps (pig, cow):
               
9, 296
               

               
Conread position:
               
5-311
               

               
Cow position:
               
chr6:62665684-62665997 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
3e-29
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-312
               

               
Cow position:
               
chr6:2875137-2874824 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
201
               

               
Alignm E-value:
               
2e-25
               

               
Alignm gaps (pig, cow):
               
9, 257
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:14225435-14225123 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
1e-30
               

               
Alignm gaps (pig, cow):
               
9, 230
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:25095782-25096096 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:25348012-25347698 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
209
               

               
Alignm E-value:
               
2e-32
               

               
Alignm gaps (pig, cow):
               
9, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:25376166-25376481 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
212
               

               
Alignm E-value:
               
2e-34
               

               
Alignm gaps (pig, cow):
               
11, 257
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:27939685-27939999 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
316
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
1e-29
               

               
Alignm gaps (pig, cow):
               
10, 256
               

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:32298710-32298397 (view UCSC Genome Browser custom track)
               

               
Alignm length:
               
315
               

               
Alignm identity:
               
210
               

               
Alignm E-value:
               
6e-35
               

               
Alignm gaps (pig, cow):
               
11, 260
               
UCSC Genome Browser

               
Conread position:
               
5-313
               

               
Cow position:
               
chr6:38061520-38061833 (view  custom track)
               

               
Alignm length:
               
317
               

               
Alignm identity:
               
206
               

               
Alignm E-value:
               
2e-26
               

               
Alignm gaps (pig, cow):
               
9, 41
               
UCSC Genome Browser

               
               
               
Conread position:
5-313

               
               
               
Cow position:
chr6:41033821-41034134 (view  custom track)

               
               
               
Alignm length:
315

               
               
               
Alignm identity:
204

               
               
               
Alignm E-value:
3e-29

               
               
               
Alignm gaps (pig, cow):
9, 255
UCSC Genome Browser

               
               
               
Conread position:
5-313

               
               
               
Cow position:
chr6:44705583-44705269 (view  custom track)

               
               
               
Alignm length:
317

               
               
               
Alignm identity:
210

               
               
               
Alignm E-value:
4e-31

               
               
               
Alignm gaps (pig, cow):
9, 240

               
               
               Conread position:5-313
               
               
               Cow position:chr6:48290700-48291014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr6:49684808-49684494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr6:52462784-52463098 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-313
               
               
               Cow position:chr6:55388645-55388957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:212
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):45, 229

               
               
               Conread position:5-313
               
               
               Cow position:chr6:56888320-56888625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 52

               
               
               Conread position:5-313
               
               
               Cow position:chr6:59834986-59835300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:3937410-3937727 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:7137434-7137117 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 202

               
               
               Conread position:5-316
               
               
               Cow position:chr6:9235420-9235737 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 252

               
               
               Conread position:5-316
               
               
               Cow position:chr6:10045114-10045430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):11, 184

               
               
               Conread position:5-316
               
               
               Cow position:chr6:11452959-11452642 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:209
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-316
               
               
               Cow position:chr6:12998324-12998641 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 196

               
               
               Conread position:5-316
               
               
               Cow position:chr6:13489302-13489621 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):9, 258

               
               
               Conread position:5-316
               
               
               Cow position:chr6:13945771-13946088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:16139807-16139481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-316
               
               
               Cow position:chr6:21857644-21857960 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:206
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):45, 255

               
               
               Conread position:5-316
               
               
               Cow position:chr6:28184413-28184096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):10, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:36299420-36299103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:211
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:40250896-40250580 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:205
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:45938187-45938503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:207
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):10, 217

               
               
               Conread position:5-316
               
               
               Cow position:chr6:51869843-51870159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 255

               
               
               Conread position:5-316
               
               
               Cow position:chr6:52424779-52425095 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 261

               
               
               Conread position:5-316
               
               
               Cow position:chr6:65839116-65838799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:210
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-316
               
               
               Cow position:chr6:67403460-67403143 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:204
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):9, 233

               
               
               Conread position:5-321
               
               
               Cow position:chr6:76534-76213 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:209
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 240

               
               
               Conread position:5-321
               
               
               Cow position:chr6:452390-452711 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):9, 230

               
               
               Conread position:5-321
               
               
               Cow position:chr6:758131-758454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:211
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):9, 0

               
               
               Conread position:5-321
               
               
               Cow position:chr6:2453867-2454190 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):10, 257

               
               
               Conread position:5-321
               
               
               Cow position:chr6:13307499-13307176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:210
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-321
               
               
               Cow position:chr6:22043105-22042785 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):9, 230

               
               
               Conread position:5-321
               
               
               Cow position:chr6:24237445-24237124 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:214
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 257

               
               
               Conread position:5-321
               
               
               Cow position:chr6:37389217-37389539 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:217
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):9, 201

               
               
               Conread position:5-321
               
               
               Cow position:chr6:49580005-49580327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-321
               
               
               Cow position:chr6:49794866-49795188 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):9, 256

               
               
               Conread position:5-323
               
               
               Cow position:chr6:43404348-43404671 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:213
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 196

               
               
               Conread position:5-327
               
               
               Cow position:chr6:27485915-27486243 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):9, 181

               
               
               Conread position:5-330
               
               
               Cow position:chr6:23567700-23567368 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):9, 261

               
               
               Conread position:5-347
               
               
               Cow position:chr6:18803151-18802804 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:232
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):8, 92

               
               
               Conread position:5-351
               
               
               Cow position:chr6:9321188-9321544 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:224
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):9, 260

               
               
               Conread position:5-351
               
               
               Cow position:chr6:51733989-51734336 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:220
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):52, 278

               
               
               Conread position:5-354
               
               
               Cow position:chr6:2607372-2607715 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:357
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):46, 171

               
               
               Conread position:5-354
               
               
               Cow position:chr6:3929081-3929427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):251, 13

               
               
               Conread position:5-365
               
               
               Cow position:chr6:52002128-52002475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:240
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):54, 118

               
               
               Conread position:5-365
               
               
               Cow position:chr6:55842402-55842044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:369
               
               
               Alignm identity:247
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):8, 95

               
               
               Conread position:5-398
               
               
               Cow position:chr6:54867270-54867670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 68

               
               
               Conread position:5-434
               
               
               Cow position:chr6:43014423-43013989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:440
               
               
               Alignm identity:270
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):9, 239

               
               
               Conread position:5-468
               
               
               Cow position:chr6:42481789-42482257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:477
               
               
               Alignm identity:297
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):9, 32

               
               
               Conread position:6-170
               
               
               Cow position:chr6:64061167-64060998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:127
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):14, 71

               
               
               Conread position:6-173
               
               
               Cow position:chr6:54479407-54479578 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:134
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):19, 77

               
               
               Conread position:6-186
               
               
               Cow position:chr6:14063898-14063720 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:143
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:6-188
               
               
               Cow position:chr6:34111175-34110986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:133
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-200
               
               
               Cow position:chr6:17068059-17067863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:156
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):168, 0

               
               
               Conread position:6-207
               
               
               Cow position:chr6:28559175-28559386 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):117, 0

               
               
               Conread position:6-227
               
               
               Cow position:chr6:62323273-62323040 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:158
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):8, 0

               
               
               Conread position:6-232
               
               
               Cow position:chr6:1784012-1783790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:184
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 77

               
               
               Conread position:6-236
               
               
               Cow position:chr6:57597232-57597002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):50, 94

               
               
               Conread position:6-255
               
               
               Cow position:chr6:66431605-66431832 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):51, 85

               
               
               Conread position:6-266
               
               
               Cow position:chr6:16049394-16049128 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:180
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-268
               
               
               Cow position:chr6:40138945-40138695 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 103

               
               
               Conread position:6-299
               
               
               Cow position:chr6:3621873-3622171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:204
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):56, 254

               
               
               Conread position:6-300
               
               
               Cow position:chr6:24601260-24600961 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):8, 254

               
               
               Conread position:6-313
               
               
               Cow position:chr6:2898671-2898984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:208
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):8, 255

               
               
               Conread position:6-323
               
               
               Cow position:chr6:18961762-18961438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 260

               
               
               Conread position:6-324
               
               
               Cow position:chr6:16646475-16646790 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 17

               
               
               Conread position:6-351
               
               
               Cow position:chr6:7103475-7103135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:258
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 32

               
               
               Conread position:6-354
               
               
               Cow position:chr6:456941-457284 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:248
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):32, 144

               
               
               Conread position:6-360
               
               
               Cow position:chr6:63272857-63272497 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 206

               
               
               Conread position:6-393
               
               
               Cow position:chr6:61113510-61113915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:408
               
               
               Alignm identity:295
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 229

               
               
               Conread position:6-398
               
               
               Cow position:chr6:42565446-42565840 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 70

               
               
               Conread position:6-414
               
               
               Cow position:chr6:26915090-26915498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):50, 132

               
               
               Conread position:6-427
               
               
               Cow position:chr6:41375513-41375953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:447
               
               
               Alignm identity:306
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):57, 33

               
               
               Conread position:6-498
               
               
               Cow position:chr6:24781803-24781316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):112, 261

               
               
               Conread position:6-517
               
               
               Cow position:chr6:9736879-9736390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:522
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 50

               
               
               Conread position:7-156
               
               
               Cow position:chr6:39137386-39137549 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:164
               
               
               Alignm identity:123
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:7-249
               
               
               Cow position:chr6:22877393-22877154 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:185
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):48, 22

               
               
               Conread position:7-252
               
               
               Cow position:chr6:46634024-46634261 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):120, 37

               
               
               Conread position:7-261
               
               
               Cow position:chr6:62038302-62038560 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:261
               
               
               Alignm identity:178
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):43, 227

               
               
               Conread position:7-280
               
               
               Cow position:chr6:26696846-26696568 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:192
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):117, 259

               
               
               Conread position:7-321
               
               
               Cow position:chr6:45592060-45592378 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:208
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):7, 253

               
               
               Conread position:7-384
               
               
               Cow position:chr6:20098203-20097820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:308
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:7-384
               
               
               Cow position:chr6:24031136-24031515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:290
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 208

               
               
               Conread position:7-392
               
               
               Cow position:chr6:35471765-35471364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:286
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 345

               
               
               Conread position:7-549
               
               
               Cow position:chr6:6201205-6201719 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:553
               
               
               Alignm identity:364
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):6, 41

               
               
               Conread position:8-187
               
               
               Cow position:chr6:50640592-50640772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):24, 128

               
               
               Conread position:8-254
               
               
               Cow position:chr6:619318-619566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):44, 171

               
               
               Conread position:8-312
               
               
               Cow position:chr6:8318404-8318093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 275

               
               
               Conread position:8-351
               
               
               Cow position:chr6:58031882-58032227 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:233
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):62, 57

               
               
               Conread position:8-355
               
               
               Cow position:chr6:16700021-16700371 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 250

               
               
               Conread position:8-366
               
               
               Cow position:chr6:60673310-60673686 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):116, 37

               
               
               Conread position:8-415
               
               
               Cow position:chr6:10176539-10176134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 47

               
               
               Conread position:9-136
               
               
               Cow position:chr6:3591886-3592014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-175
               
               
               Cow position:chr6:33147822-33147990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 55

               
               
               Conread position:9-192
               
               
               Cow position:chr6:60017831-60018013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:146
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):44, 119

               
               
               Conread position:9-200
               
               
               Cow position:chr6:28180204-28180013 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 115

               
               
               Conread position:9-202
               
               
               Cow position:chr6:42267627-42267818 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):46, 131

               
               
               Conread position:9-209
               
               
               Cow position:chr6:68297824-68297624 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:207
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):47, 82

               
               
               Conread position:9-229
               
               
               Cow position:chr6:21311995-21311764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:178
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-230
               
               
               Cow position:chr6:62967124-62966900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:170
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):48, 99

               
               
               Conread position:9-239
               
               
               Cow position:chr6:24631328-24631097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:171
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):47, 57

               
               
               Conread position:9-275
               
               
               Cow position:chr6:7994707-7994438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:188
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):48, 197

               
               
               Conread position:9-278
               
               
               Cow position:chr6:32335580-32335834 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:274
               
               
               Alignm identity:196
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):47, 75

               
               
               Conread position:9-284
               
               
               Cow position:chr6:58075988-58076269 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:209
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):154, 221

               
               
               Conread position:9-300
               
               
               Cow position:chr6:58172948-58173240 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:220
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 66

               
               
               Conread position:9-312
               
               
               Cow position:chr6:3978900-3978595 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:223
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):113, 52

               
               
               Conread position:9-322
               
               
               Cow position:chr6:34075787-34076107 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:237
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 29

               
               
               Conread position:9-326
               
               
               Cow position:chr6:11637982-11637675 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:225
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):113, 37

               
               
               Conread position:9-332
               
               
               Cow position:chr6:52556711-52556393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:326
               
               
               Alignm identity:223
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):47, 62

               
               
               Conread position:9-332
               
               
               Cow position:chr6:58589796-58590109 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):48, 83

               
               
               Conread position:9-339
               
               
               Cow position:chr6:44098848-44099178 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):143, 249

               
               
               Conread position:9-349
               
               
               Cow position:chr6:66087718-66088045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:235
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 106

               
               
               Conread position:9-351
               
               
               Cow position:chr6:561380-561733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:242
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):11, 244

               
               
               Conread position:9-351
               
               
               Cow position:chr6:54600131-54600454 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:245
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 48

               
               
               Conread position:9-353
               
               
               Cow position:chr6:59508109-59508464 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:249
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):22, 192

               
               
               Conread position:9-364
               
               
               Cow position:chr6:56349933-56350294 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:235
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 229

               
               
               Conread position:9-366
               
               
               Cow position:chr6:54369136-54368783 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):167, 217

               
               
               Conread position:9-384
               
               
               Cow position:chr6:31525812-31526185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 152

               
               
               Conread position:9-397
               
               
               Cow position:chr6:35103564-35103176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:265
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):139, 83

               
               
               Conread position:9-398
               
               
               Cow position:chr6:16706770-16707165 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 109

               
               
               Conread position:9-403
               
               
               Cow position:chr6:6264407-6264810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):81, 112

               
               
               Conread position:9-405
               
               
               Cow position:chr6:15305349-15305728 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:397
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:9-408
               
               
               Cow position:chr6:64431702-64432099 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 167

               
               
               Conread position:9-444
               
               
               Cow position:chr6:34251512-34251103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:439
               
               
               Alignm identity:286
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):163, 38

               
               
               Conread position:9-513
               
               
               Cow position:chr6:13040215-13040703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:514
               
               
               Alignm identity:373
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 193

               
               
               Conread position:9-515
               
               
               Cow position:chr6:8209825-8209322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:523
               
               
               Alignm identity:376
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 9

               
               
               Conread position:11-156
               
               
               Cow position:chr6:41678335-41678481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:147
               
               
               Alignm identity:109
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):10, 0

               
               
               Conread position:11-274
               
               
               Cow position:chr6:64303884-64303616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:180
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):25, 5

               
               
               Conread position:11-344
               
               
               Cow position:chr6:47026249-47026576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:228
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):246, 5

               
               
               Conread position:11-358
               
               
               Cow position:chr6:4383259-4383592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:11-398
               
               
               Cow position:chr6:4468513-4468916 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:413
               
               
               Alignm identity:283
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:12-244
               
               
               Cow position:chr6:39994695-39994462 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):44, 179

               
               
               Conread position:12-252
               
               
               Cow position:chr6:1891079-1890837 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:175
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):132, 182

               
               
               Conread position:12-256
               
               
               Cow position:chr6:29412995-29412761 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):44, 165

               
               
               Conread position:12-351
               
               
               Cow position:chr6:60859540-60859195 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):45, 274

               
               
               Conread position:12-364
               
               
               Cow position:chr6:25407630-25407271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:262
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):48, 246

               
               
               Conread position:12-385
               
               
               Cow position:chr6:16746107-16746482 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:13-216
               
               
               Cow position:chr6:61978414-61978203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):38, 153

               
               
               Conread position:13-240
               
               
               Cow position:chr6:54885146-54884915 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:13-252
               
               
               Cow position:chr6:2582641-2582878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):5, 36

               
               
               Conread position:13-261
               
               
               Cow position:chr6:52177131-52176878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):37, 247

               
               
               Conread position:13-264
               
               
               Cow position:chr6:28099500-28099242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):10, 234

               
               
               Conread position:13-266
               
               
               Cow position:chr6:10422942-10423186 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:255
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):40, 5

               
               
               Conread position:13-275
               
               
               Cow position:chr6:31585929-31585662 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:180
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):37, 247

               
               
               Conread position:13-300
               
               
               Cow position:chr6:41622944-41622652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:197
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):37, 247

               
               
               Conread position:13-305
               
               
               Cow position:chr6:32054771-32054474 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:199
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):37, 247

               
               
               Conread position:13-351
               
               
               Cow position:chr6:43789457-43789111 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:233
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):43, 16

               
               
               Conread position:13-365
               
               
               Cow position:chr6:10695635-10695980 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 62

               
               
               Conread position:13-503
               
               
               Cow position:chr6:21230733-21231231 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:506
               
               
               Alignm identity:320
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):43, 247

               
               
               Conread position:14-229
               
               
               Cow position:chr6:208893-209103 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:155
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):40, 161

               
               
               Conread position:14-242
               
               
               Cow position:chr6:3374801-3374570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):113, 63

               
               
               Conread position:14-273
               
               
               Cow position:chr6:59256223-59256484 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):42, 126

               
               
               Conread position:15-194
               
               
               Cow position:chr6:54947134-54947319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:15-236
               
               
               Cow position:chr6:41824059-41823830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:168
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:15-236
               
               
               Cow position:chr6:46274696-46274469 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:157
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:15-267
               
               
               Cow position:chr6:27854289-27854548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:260
               
               
               Alignm identity:175
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):35, 0

               
               
               Conread position:15-275
               
               
               Cow position:chr6:28680510-28680245 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:179
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):36, 245

               
               
               Conread position:15-313
               
               
               Cow position:chr6:36928421-36928729 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):93, 0

               
               
               Conread position:15-351
               
               
               Cow position:chr6:16593846-16594182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):42, 228

               
               
               Conread position:15-351
               
               
               Cow position:chr6:35872821-35872475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:226
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):26, 127

               
               
               Conread position:15-415
               
               
               Cow position:chr6:52478658-52478242 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:418
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):49, 396

               
               
               Conread position:16-154
               
               
               Cow position:chr6:60144407-60144266 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:116
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):35, 108

               
               
               Conread position:16-365
               
               
               Cow position:chr6:9026287-9026639 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 252

               
               
               Conread position:16-427
               
               
               Cow position:chr6:19401632-19402028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:284
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 105

               
               
               Conread position:17-168
               
               
               Cow position:chr6:16288647-16288500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:117
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):108, 0

               
               
               Conread position:17-168
               
               
               Cow position:chr6:31048735-31048587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:153
               
               
               Alignm identity:114
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):39, 109

               
               
               Conread position:17-170
               
               
               Cow position:chr6:55344711-55344555 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:17-177
               
               
               Cow position:chr6:39954458-39954623 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:121
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:17-181
               
               
               Cow position:chr6:9453879-9454038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:125
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):9, 41

               
               
               Conread position:17-190
               
               
               Cow position:chr6:6164424-6164598 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:131
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):85, 42

               
               
               Conread position:17-191
               
               
               Cow position:chr6:18977393-18977573 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):14, 0

               
               
               Conread position:17-214
               
               
               Cow position:chr6:34235662-34235467 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:155
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):38, 105

               
               
               Conread position:17-226
               
               
               Cow position:chr6:20261103-20261305 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):14, 158

               
               
               Conread position:17-252
               
               
               Cow position:chr6:47327297-47327058 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:173
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-260
               
               
               Cow position:chr6:60931129-60930884 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:184
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):39, 138

               
               
               Conread position:17-264
               
               
               Cow position:chr6:12519288-12519525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:174
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):14, 40

               
               
               Conread position:17-310
               
               
               Cow position:chr6:9322928-9323214 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 89

               
               
               Conread position:17-314
               
               
               Cow position:chr6:64436559-64436257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):37, 95

               
               
               Conread position:17-321
               
               
               Cow position:chr6:68049207-68049507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:231
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 198

               
               
               Conread position:17-336
               
               
               Cow position:chr6:8804755-8804440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 6

               
               
               Conread position:17-342
               
               
               Cow position:chr6:13592482-13592806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):36, 17

               
               
               Conread position:17-349
               
               
               Cow position:chr6:34549186-34549506 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:219
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):227, 36

               
               
               Conread position:17-349
               
               
               Cow position:chr6:42617659-42617989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:217
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):84, 16

               
               
               Conread position:17-350
               
               
               Cow position:chr6:51071481-51071813 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:234
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):107, 87

               
               
               Conread position:17-351
               
               
               Cow position:chr6:10332325-10331995 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:251
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 143

               
               
               Conread position:17-351
               
               
               Cow position:chr6:14201469-14201795 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:241
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):34, 179

               
               
               Conread position:17-351
               
               
               Cow position:chr6:32420906-32421253 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:348
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):47, 0

               
               
               Conread position:17-351
               
               
               Cow position:chr6:63286739-63286399 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:236
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):42, 47

               
               
               Conread position:17-358
               
               
               Cow position:chr6:48573111-48572767 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):81, 53

               
               
               Conread position:17-360
               
               
               Cow position:chr6:35539728-35539394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:246
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):40, 62

               
               
               Conread position:17-366
               
               
               Cow position:chr6:57164201-57164550 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:252
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 47

               
               
               Conread position:17-392
               
               
               Cow position:chr6:60350528-60350145 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:298
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-397
               
               
               Cow position:chr6:15938081-15937703 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 26

               
               
               Conread position:17-397
               
               
               Cow position:chr6:44078293-44078666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 121

               
               
               Conread position:17-397
               
               
               Cow position:chr6:44194774-44194398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:386
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 105

               
               
               Conread position:17-398
               
               
               Cow position:chr6:16103431-16103045 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 107

               
               
               Conread position:17-405
               
               
               Cow position:chr6:24004324-24004696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:389
               
               
               Alignm identity:273
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:17-414
               
               
               Cow position:chr6:14949712-14949312 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:287
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 201

               
               
               Conread position:17-500
               
               
               Cow position:chr6:67950730-67951194 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:357
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 110

               
               
               Conread position:18-156
               
               
               Cow position:chr6:56502081-56502221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:116
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:18-236
               
               
               Cow position:chr6:24658007-24657782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:157
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):38, 44

               
               
               Conread position:18-268
               
               
               Cow position:chr6:3017221-3017472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:178
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):77, 38

               
               
               Conread position:18-359
               
               
               Cow position:chr6:37356394-37356047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):38, 243

               
               
               Conread position:18-369
               
               
               Cow position:chr6:130392-130039 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 198

               
               
               Conread position:18-396
               
               
               Cow position:chr6:49002952-49002589 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:381
               
               
               Alignm identity:268
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):150, 100

               
               
               Conread position:18-414
               
               
               Cow position:chr6:24468620-24468229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:405
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 70

               
               
               Conread position:18-415
               
               
               Cow position:chr6:61631847-61631440 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:410
               
               
               Alignm identity:289
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):39, 258

               
               
               Conread position:19-160
               
               
               Cow position:chr6:24557410-24557551 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:142
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:19-166
               
               
               Cow position:chr6:60781675-60781525 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:152
               
               
               Alignm identity:118
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):107, 46

               
               
               Conread position:19-185
               
               
               Cow position:chr6:14289561-14289398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:19-185
               
               
               Cow position:chr6:22986216-22986049 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:170
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):107, 13

               
               
               Conread position:19-185
               
               
               Cow position:chr6:65846674-65846504 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:173
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):35, 148

               
               
               Conread position:19-227
               
               
               Cow position:chr6:13717625-13717827 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:19-236
               
               
               Cow position:chr6:51191588-51191817 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:164
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):84, 37

               
               
               Conread position:19-249
               
               
               Cow position:chr6:6995171-6994950 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:162
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):60, 26

               
               
               Conread position:19-249
               
               
               Cow position:chr6:67304575-67304807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:174
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):107, 159

               
               
               Conread position:19-253
               
               
               Cow position:chr6:10254015-10254247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:181
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):108, 18

               
               
               Conread position:19-255
               
               
               Cow position:chr6:20171994-20172233 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:165
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:19-256
               
               
               Cow position:chr6:1889308-1889080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:171
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 40

               
               
               Conread position:19-258
               
               
               Cow position:chr6:30826261-30826017 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:188
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):106, 36

               
               
               Conread position:19-260
               
               
               Cow position:chr6:6701495-6701256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:181
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):37, 143

               
               
               Conread position:19-267
               
               
               Cow position:chr6:56902637-56902883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):33, 168

               
               
               Conread position:19-268
               
               
               Cow position:chr6:10635950-10636198 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:197
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):187, 95

               
               
               Conread position:19-268
               
               
               Cow position:chr6:57384293-57384541 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:184
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):38, 126

               
               
               Conread position:19-283
               
               
               Cow position:chr6:4079610-4079346 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:189
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):36, 173

               
               
               Conread position:19-283
               
               
               Cow position:chr6:20379692-20379427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:196
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):34, 120

               
               
               Conread position:19-291
               
               
               Cow position:chr6:52025882-52025604 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):12, 26

               
               
               Conread position:19-300
               
               
               Cow position:chr6:49685358-49685640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:210
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 141

               
               
               Conread position:19-301
               
               
               Cow position:chr6:57504545-57504820 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:192
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):77, 20

               
               
               Conread position:19-302
               
               
               Cow position:chr6:56041849-56041566 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:288
               
               
               Alignm identity:208
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):37, 122

               
               
               Conread position:19-320
               
               
               Cow position:chr6:3118424-3118118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:208
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):36, 99

               
               
               Conread position:19-324
               
               
               Cow position:chr6:54975000-54974693 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:309
               
               
               Alignm identity:198
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):38, 238

               
               
               Conread position:19-346
               
               
               Cow position:chr6:67968852-67968509 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:247
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):51, 192

               
               
               Conread position:19-347
               
               
               Cow position:chr6:66433721-66434051 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 118

               
               
               Conread position:19-353
               
               
               Cow position:chr6:17090372-17090707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):106, 31

               
               
               Conread position:19-371
               
               
               Cow position:chr6:66874135-66874477 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:356
               
               
               Alignm identity:261
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 89

               
               
               Conread position:19-397
               
               
               Cow position:chr6:9452996-9452617 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:281
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):108, 37

               
               
               Conread position:19-397
               
               
               Cow position:chr6:15301044-15300683 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:280
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 109

               
               
               Conread position:19-397
               
               
               Cow position:chr6:38218445-38218819 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):34, 143

               
               
               Conread position:19-398
               
               
               Cow position:chr6:6067904-6067548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 109

               
               
               Conread position:19-398
               
               
               Cow position:chr6:37148970-37149342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:283
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 35

               
               
               Conread position:19-399
               
               
               Cow position:chr6:28476955-28477322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:261
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):37, 101

               
               
               Conread position:19-399
               
               
               Cow position:chr6:28977258-28976886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:296
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):40, 115

               
               
               Conread position:19-399
               
               
               Cow position:chr6:31564560-31564184 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 25

               
               
               Conread position:19-399
               
               
               Cow position:chr6:45065233-45064863 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:19-399
               
               
               Cow position:chr6:66532028-66531668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):224, 37

               
               
               Conread position:19-406
               
               
               Cow position:chr6:54490967-54490576 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 107

               
               
               Conread position:19-414
               
               
               Cow position:chr6:10106223-10105812 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:414
               
               
               Alignm identity:318
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 393

               
               
               Conread position:19-414
               
               
               Cow position:chr6:51581486-51581087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:406
               
               
               Alignm identity:311
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):21, 209

               
               
               Conread position:19-415
               
               
               Cow position:chr6:36202601-36202990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:404
               
               
               Alignm identity:312
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):37, 53

               
               
               Conread position:19-434
               
               
               Cow position:chr6:53460798-53460380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:421
               
               
               Alignm identity:309
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):229, 386

               
               
               Conread position:19-500
               
               
               Cow position:chr6:21869872-21869391 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:490
               
               
               Alignm identity:362
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 109

               
               
               Conread position:19-503
               
               
               Cow position:chr6:38440955-38441420 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:491
               
               
               Alignm identity:344
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 143

               
               
               Conread position:19-517
               
               
               Cow position:chr6:727068-726567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:510
               
               
               Alignm identity:314
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):32, 17

               
               
               Conread position:20-204
               
               
               Cow position:chr6:89135-88945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:145
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:20-327
               
               
               Cow position:chr6:14850937-14850632 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:219
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):148, 27

               
               
               Conread position:20-366
               
               
               Cow position:chr6:27110365-27110718 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:242
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):76, 36

               
               
               Conread position:20-395
               
               
               Cow position:chr6:38771071-38771430 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:277
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):223, 5

               
               
               Conread position:20-413
               
               
               Cow position:chr6:7190343-7189952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 9

               
               
               Conread position:21-170
               
               
               Cow position:chr6:12739356-12739507 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:115
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):106, 38

               
               
               Conread position:21-283
               
               
               Cow position:chr6:50800631-50800369 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):35, 116

               
               
               Conread position:21-292
               
               
               Cow position:chr6:48344103-48344380 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:213
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 0

               
               
               Conread position:21-303
               
               
               Cow position:chr6:25773606-25773327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:222
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 103

               
               
               Conread position:22-414
               
               
               Cow position:chr6:29484868-29485251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:302
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 20

               
               
               Conread position:23-170
               
               
               Cow position:chr6:55140883-55140735 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:149
               
               
               Alignm identity:108
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:23-208
               
               
               Cow position:chr6:51398578-51398764 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:151
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):33, 176

               
               
               Conread position:23-208
               
               
               Cow position:chr6:59302047-59301857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:161
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 10

               
               
               Conread position:23-222
               
               
               Cow position:chr6:19508653-19508463 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):126, 0

               
               
               Conread position:23-225
               
               
               Cow position:chr6:30128548-30128339 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 135

               
               
               Conread position:23-229
               
               
               Cow position:chr6:20605711-20605920 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:211
               
               
               Alignm identity:164
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):103, 149

               
               
               Conread position:23-230
               
               
               Cow position:chr6:388948-389155 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:172
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 64

               
               
               Conread position:23-247
               
               
               Cow position:chr6:48807222-48806993 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:170
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):34, 99

               
               
               Conread position:23-249
               
               
               Cow position:chr6:45160514-45160290 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:186
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):104, 0

               
               
               Conread position:23-263
               
               
               Cow position:chr6:7824540-7824782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:185
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):106, 27

               
               
               Conread position:23-312
               
               
               Cow position:chr6:5445406-5445690 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:208
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):30, 51

               
               
               Conread position:23-322
               
               
               Cow position:chr6:21542097-21542400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:239
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:23-359
               
               
               Cow position:chr6:54140591-54140911 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):146, 98

               
               
               Conread position:23-365
               
               
               Cow position:chr6:7173987-7173630 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:359
               
               
               Alignm identity:236
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):28, 344

               
               
               Conread position:23-399
               
               
               Cow position:chr6:55282513-55282139 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:383
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):5, 136

               
               
               Conread position:23-408
               
               
               Cow position:chr6:41733404-41733793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:395
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 97

               
               
               Conread position:23-415
               
               
               Cow position:chr6:46860390-46859998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:398
               
               
               Alignm identity:304
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):101, 172

               
               
               Conread position:23-497
               
               
               Cow position:chr6:5302627-5302168 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:481
               
               
               Alignm identity:332
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):33, 89

               
               
               Conread position:24-364
               
               
               Cow position:chr6:29239721-29240059 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:240
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:24-365
               
               
               Cow position:chr6:19427227-19427570 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):32, 246

               
               
               Conread position:24-366
               
               
               Cow position:chr6:24649626-24649965 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:240
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):75, 151

               
               
               Conread position:24-385
               
               
               Cow position:chr6:38614602-38614952 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 99

               
               
               Conread position:24-398
               
               
               Cow position:chr6:13367073-13367438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:263
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 80

               
               
               Conread position:24-399
               
               
               Cow position:chr6:9008833-9008458 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:275
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):32, 235

               
               
               Conread position:24-498
               
               
               Cow position:chr6:38207717-38207250 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:488
               
               
               Alignm identity:369
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):82, 212

               
               
               Conread position:25-166
               
               
               Cow position:chr6:6117770-6117629 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):27, 128

               
               
               Conread position:25-173
               
               
               Cow position:chr6:7253647-7253494 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:122
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):31, 0

               
               
               Conread position:25-230
               
               
               Cow position:chr6:52401640-52401845 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:158
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):143, 92

               
               
               Conread position:25-264
               
               
               Cow position:chr6:38895296-38895065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):44, 63

               
               
               Conread position:25-399
               
               
               Cow position:chr6:23532443-23532808 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:382
               
               
               Alignm identity:256
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):30, 11

               
               
               Conread position:25-406
               
               
               Cow position:chr6:53651818-53652199 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:387
               
               
               Alignm identity:292
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):6, 177

               
               
               Conread position:25-414
               
               
               Cow position:chr6:49421997-49421622 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:392
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):226, 69

               
               
               Conread position:25-421
               
               
               Cow position:chr6:24110083-24110455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:400
               
               
               Alignm identity:261
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):28, 100

               
               
               Conread position:26-182
               
               
               Cow position:chr6:10225896-10225746 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:123
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:26-189
               
               
               Cow position:chr6:21184736-21184902 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:128
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:26-210
               
               
               Cow position:chr6:5462268-5462087 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:145
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):142, 82

               
               
               Conread position:26-250
               
               
               Cow position:chr6:6731044-6731271 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):26, 197

               
               
               Conread position:26-257
               
               
               Cow position:chr6:1907319-1907556 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:178
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):28, 166

               
               
               Conread position:26-305
               
               
               Cow position:chr6:34031448-34031721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 89

               
               
               Conread position:26-351
               
               
               Cow position:chr6:52697766-52698088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:331
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):51, 90

               
               
               Conread position:26-362
               
               
               Cow position:chr6:611341-611666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:342
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 151

               
               
               Conread position:26-371
               
               
               Cow position:chr6:899504-899167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 49

               
               
               Conread position:26-384
               
               
               Cow position:chr6:35613629-35613278 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:274
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):225, 37

               
               
               Conread position:26-395
               
               
               Cow position:chr6:36470783-36470412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:282
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 99

               
               
               Conread position:26-397
               
               
               Cow position:chr6:35435783-35436146 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:376
               
               
               Alignm identity:252
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):27, 126

               
               
               Conread position:27-170
               
               
               Cow position:chr6:62486148-62486002 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:112
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):100, 54

               
               
               Conread position:27-203
               
               
               Cow position:chr6:15266488-15266310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:146
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):13, 120

               
               
               Conread position:27-212
               
               
               Cow position:chr6:2896534-2896723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:193
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):24, 11

               
               
               Conread position:27-228
               
               
               Cow position:chr6:7694572-7694365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:167
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):94, 63

               
               
               Conread position:27-242
               
               
               Cow position:chr6:11789780-11789999 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:162
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):29, 100

               
               
               Conread position:27-242
               
               
               Cow position:chr6:27710436-27710649 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):28, 79

               
               
               Conread position:27-243
               
               
               Cow position:chr6:1914402-1914606 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:160
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):96, 49

               
               
               Conread position:27-266
               
               
               Cow position:chr6:1538577-1538822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):97, 230

               
               
               Conread position:27-312
               
               
               Cow position:chr6:22968855-22969150 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:204
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):18, 203

               
               
               Conread position:27-322
               
               
               Cow position:chr6:415877-416185 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:225
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):100, 7

               
               
               Conread position:27-349
               
               
               Cow position:chr6:30315276-30314945 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:336
               
               
               Alignm identity:221
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):97, 29

               
               
               Conread position:27-351
               
               
               Cow position:chr6:50572388-50572721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:225
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):43, 38

               
               
               Conread position:27-351
               
               
               Cow position:chr6:54430600-54430936 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:241
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):24, 0

               
               
               Conread position:27-358
               
               
               Cow position:chr6:55936195-55935865 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:237
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):29, 120

               
               
               Conread position:27-365
               
               
               Cow position:chr6:35415740-35415396 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):76, 52

               
               
               Conread position:27-365
               
               
               Cow position:chr6:38018055-38018381 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:220
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):28, 93

               
               
               Conread position:27-369
               
               
               Cow position:chr6:23248182-23247842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:351
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 173

               
               
               Conread position:27-401
               
               
               Cow position:chr6:6063498-6063138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:379
               
               
               Alignm identity:270
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 105

               
               
               Conread position:28-166
               
               
               Cow position:chr6:6671419-6671554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:140
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):25, 112

               
               
               Conread position:28-240
               
               
               Cow position:chr6:1474978-1475183 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:154
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:28-261
               
               
               Cow position:chr6:15923215-15922981 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:188
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):222, 30

               
               
               Conread position:28-264
               
               
               Cow position:chr6:242596-242830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:182
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):29, 87

               
               
               Conread position:28-268
               
               
               Cow position:chr6:36987612-36987857 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:170
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):43, 216

               
               
               Conread position:28-355
               
               
               Cow position:chr6:45596745-45596422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:334
               
               
               Alignm identity:232
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):139, 28

               
               
               Conread position:29-266
               
               
               Cow position:chr6:59728504-59728748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):41, 36

               
               
               Conread position:29-266
               
               
               Cow position:chr6:60166547-60166306 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:166
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):98, 29

               
               
               Conread position:29-308
               
               
               Cow position:chr6:6460325-6460605 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):98, 27

               
               
               Conread position:29-320
               
               
               Cow position:chr6:33984748-33985054 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):12, 0

               
               
               Conread position:29-364
               
               
               Cow position:chr6:60442202-60442527 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):138, 121

               
               
               Conread position:29-398
               
               
               Cow position:chr6:45690810-45690457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:375
               
               
               Alignm identity:285
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 173

               
               
               Conread position:29-406
               
               
               Cow position:chr6:8965873-8966256 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:390
               
               
               Alignm identity:299
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 35

               
               
               Conread position:29-409
               
               
               Cow position:chr6:21110752-21111113 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:384
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 109

               
               
               Conread position:29-488
               
               
               Cow position:chr6:51674701-51675159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:326
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):27, 92

               
               
               Conread position:30-208
               
               
               Cow position:chr6:42931327-42931142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):34, 0

               
               
               Conread position:30-252
               
               
               Cow position:chr6:6721896-6722108 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:155
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):25, 61

               
               
               Conread position:30-322
               
               
               Cow position:chr6:65096629-65096340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:198
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):126, 8

               
               
               Conread position:30-366
               
               
               Cow position:chr6:28084232-28083901 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:231
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):29, 151

               
               
               Conread position:30-366
               
               
               Cow position:chr6:36652206-36652543 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):231, 26

               
               
               Conread position:30-478
               
               
               Cow position:chr6:52562390-52561948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:459
               
               
               Alignm identity:290
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):41, 184

               
               
               Conread position:31-398
               
               
               Cow position:chr6:47339564-47339203 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):25, 95

               
               
               Conread position:32-238
               
               
               Cow position:chr6:62324776-62324986 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:212
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):26, 158

               
               
               Conread position:32-264
               
               
               Cow position:chr6:62708355-62708588 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:152
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):30, 0

               
               
               Conread position:32-336
               
               
               Cow position:chr6:24961931-24962236 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 159

               
               
               Conread position:32-399
               
               
               Cow position:chr6:827920-827554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:377
               
               
               Alignm identity:248
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):24, 35

               
               
               Conread position:32-526
               
               
               Cow position:chr6:6400732-6401226 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:508
               
               
               Alignm identity:367
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 129

               
               
               Conread position:33-165
               
               
               Cow position:chr6:33311259-33311394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:136
               
               
               Alignm identity:105
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):49, 0

               
               
               Conread position:33-208
               
               
               Cow position:chr6:20747438-20747616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:179
               
               
               Alignm identity:127
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:33-216
               
               
               Cow position:chr6:59015775-59015587 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:156
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 116

               
               
               Conread position:33-226
               
               
               Cow position:chr6:55366536-55366335 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):23, 0

               
               
               Conread position:33-233
               
               
               Cow position:chr6:11383178-11382990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:203
               
               
               Alignm identity:153
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):158, 26

               
               
               Conread position:33-243
               
               
               Cow position:chr6:49647294-49647082 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:151
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):55, 74

               
               
               Conread position:33-243
               
               
               Cow position:chr6:66453588-66453797 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:165
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):22, 70

               
               
               Conread position:33-247
               
               
               Cow position:chr6:30786361-30786153 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:172
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):24, 87

               
               
               Conread position:33-247
               
               
               Cow position:chr6:65904480-65904270 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:157
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:33-251
               
               
               Cow position:chr6:63406465-63406677 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):57, 0

               
               
               Conread position:33-322
               
               
               Cow position:chr6:32677285-32677005 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:193
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):211, 23

               
               
               Conread position:33-351
               
               
               Cow position:chr6:1835391-1835713 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:212
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):23, 79

               
               
               Conread position:33-351
               
               
               Cow position:chr6:59620456-59620759 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 166

               
               
               Conread position:33-360
               
               
               Cow position:chr6:65702614-65702298 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:335
               
               
               Alignm identity:241
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):18, 83

               
               
               Conread position:33-365
               
               
               Cow position:chr6:56376560-56376229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:235
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):159, 23

               
               
               Conread position:33-398
               
               
               Cow position:chr6:65903829-65903472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:248
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):136, 156

               
               
               Conread position:33-500
               
               
               Cow position:chr6:5609653-5609205 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:474
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):23, 163

               
               
               Conread position:34-284
               
               
               Cow position:chr6:24515405-24515159 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:252
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):22, 180

               
               
               Conread position:34-288
               
               
               Cow position:chr6:61130694-61130434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:262
               
               
               Alignm identity:191
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):23, 236

               
               
               Conread position:34-324
               
               
               Cow position:chr6:51186997-51186707 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:187
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):23, 206

               
               
               Conread position:34-336
               
               
               Cow position:chr6:57405336-57405034 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):19, 37

               
               
               Conread position:34-398
               
               
               Cow position:chr6:17997527-17997167 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:367
               
               
               Alignm identity:271
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 187

               
               
               Conread position:34-410
               
               
               Cow position:chr6:59069840-59069457 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:388
               
               
               Alignm identity:276
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):18, 190

               
               
               Conread position:35-236
               
               
               Cow position:chr6:50271305-50271106 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:153
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):21, 138

               
               
               Conread position:35-312
               
               
               Cow position:chr6:6367873-6367600 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:190
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):21, 59

               
               
               Conread position:35-351
               
               
               Cow position:chr6:8534853-8534533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:211
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):24, 49

               
               
               Conread position:35-513
               
               
               Cow position:chr6:240149-239667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:493
               
               
               Alignm identity:304
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):24, 199

               
               
               Conread position:35-515
               
               
               Cow position:chr6:21456900-21456426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:349
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):89, 112

               
               
               Conread position:36-313
               
               
               Cow position:chr6:12629815-12630088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:204
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):132, 118

               
               
               Conread position:36-365
               
               
               Cow position:chr6:14658397-14658726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:222
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):99, 19

               
               
               Conread position:36-498
               
               
               Cow position:chr6:66131098-66131554 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:472
               
               
               Alignm identity:327
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):20, 74

               
               
               Conread position:38-259
               
               
               Cow position:chr6:31425771-31425548 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):18, 144

               
               
               Conread position:39-170
               
               
               Cow position:chr6:59069122-59068991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:133
               
               
               Alignm identity:102
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):32, 26

               
               
               Conread position:39-201
               
               
               Cow position:chr6:31928066-31928221 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:132
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):17, 60

               
               
               Conread position:39-210
               
               
               Cow position:chr6:68112693-68112513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:133
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):17, 28

               
               
               Conread position:39-252
               
               
               Cow position:chr6:44377059-44377277 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):88, 65

               
               
               Conread position:39-255
               
               
               Cow position:chr6:34115988-34116212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):77, 11

               
               
               Conread position:39-255
               
               
               Cow position:chr6:41495500-41495721 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):12, 147

               
               
               Conread position:39-257
               
               
               Cow position:chr6:58439761-58439974 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:166
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):12, 117

               
               
               Conread position:39-264
               
               
               Cow position:chr6:60334939-60335166 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:157
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):42, 205

               
               
               Conread position:39-269
               
               
               Cow position:chr6:53139136-53138896 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:180
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):13, 0

               
               
               Conread position:39-285
               
               
               Cow position:chr6:63921777-63922014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:176
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):18, 81

               
               
               Conread position:39-302
               
               
               Cow position:chr6:61137158-61137432 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:277
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 144

               
               
               Conread position:39-314
               
               
               Cow position:chr6:47988983-47989241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:211
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):86, 17

               
               
               Conread position:39-321
               
               
               Cow position:chr6:22141993-22142280 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:289
               
               
               Alignm identity:183
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):12, 221

               
               
               Conread position:39-326
               
               
               Cow position:chr6:68365766-68366053 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:191
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):17, 89

               
               
               Conread position:39-350
               
               
               Cow position:chr6:7989620-7989310 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 32

               
               
               Conread position:39-351
               
               
               Cow position:chr6:31260780-31261100 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:236
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 188

               
               
               Conread position:39-358
               
               
               Cow position:chr6:45606655-45606345 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:226
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):131, 27

               
               
               Conread position:39-360
               
               
               Cow position:chr6:54864873-54864546 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:244
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):134, 85

               
               
               Conread position:39-365
               
               
               Cow position:chr6:28080104-28079794 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:228
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):14, 91

               
               
               Conread position:39-398
               
               
               Cow position:chr6:21737089-21736740 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:248
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):17, 70

               
               
               Conread position:39-399
               
               
               Cow position:chr6:7539366-7539726 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:368
               
               
               Alignm identity:260
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):12, 120

               
               
               Conread position:39-415
               
               
               Cow position:chr6:19695600-19695978 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:385
               
               
               Alignm identity:263
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):121, 89

               
               
               Conread position:39-436
               
               
               Cow position:chr6:14958556-14958147 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:411
               
               
               Alignm identity:297
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):15, 229

               
               
               Conread position:40-212
               
               
               Cow position:chr6:10705976-10705801 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:129
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:40-397
               
               
               Cow position:chr6:38641292-38641645 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:279
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):16, 97

               
               
               Conread position:40-399
               
               
               Cow position:chr6:5114254-5113900 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:364
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):36, 183

               
               
               Conread position:40-526
               
               
               Cow position:chr6:6098488-6097987 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:509
               
               
               Alignm identity:364
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 100

               
               
               Conread position:41-302
               
               
               Cow position:chr6:24223366-24223097 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:271
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):16, 243

               
               
               Conread position:41-350
               
               
               Cow position:chr6:20157120-20157438 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:236
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):53, 0

               
               
               Conread position:41-351
               
               
               Cow position:chr6:445106-445429 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 0

               
               
               Conread position:41-365
               
               
               Cow position:chr6:15782730-15782395 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:228
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):14, 109

               
               
               Conread position:41-398
               
               
               Cow position:chr6:53025003-53024652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:254
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):15, 104

               
               
               Conread position:42-170
               
               
               Cow position:chr6:16597213-16597340 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:98
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):16, 0

               
               
               Conread position:42-363
               
               
               Cow position:chr6:63252126-63251805 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:324
               
               
               Alignm identity:223
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):134, 214

               
               
               Conread position:42-398
               
               
               Cow position:chr6:51463820-51463481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:267
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 150

               
               
               Conread position:43-238
               
               
               Cow position:chr6:20548797-20548990 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:136
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):129, 0

               
               
               Conread position:43-246
               
               
               Cow position:chr6:48425524-48425320 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:165
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):10, 77

               
               
               Conread position:43-532
               
               
               Cow position:chr6:67456500-67457008 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:516
               
               
               Alignm identity:346
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 231

               
               
               Conread position:44-221
               
               
               Cow position:chr6:16220228-16220047 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:129
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):91, 152

               
               
               Conread position:44-284
               
               
               Cow position:chr6:18968972-18968741 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:187
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):216, 18

               
               
               Conread position:44-384
               
               
               Cow position:chr6:1886865-1886528 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:250
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):7, 79

               
               
               Conread position:44-398
               
               
               Cow position:chr6:10400097-10399762 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:360
               
               
               Alignm identity:257
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):12, 81

               
               
               Conread position:44-399
               
               
               Cow position:chr6:528478-528130 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:361
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):17, 11

               
               
               Conread position:45-220
               
               
               Cow position:chr6:46245524-46245342 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:183
               
               
               Alignm identity:149
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):6, 0

               
               
               Conread position:45-387
               
               
               Cow position:chr6:21231335-21231666 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:269
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):11, 83

               
               
               Conread position:46-336
               
               
               Cow position:chr6:58732513-58732220 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:221
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):70, 258

               
               
               Conread position:47-255
               
               
               Cow position:chr6:17345173-17345377 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:213
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):122, 28

               
               
               Conread position:47-257
               
               
               Cow position:chr6:12964249-12964468 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):8, 24

               
               
               Conread position:47-286
               
               
               Cow position:chr6:46400604-46400372 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:182
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):17, 81

               
               
               Conread position:47-318
               
               
               Cow position:chr6:42566670-42566929 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):212, 45

               
               
               Conread position:47-324
               
               
               Cow position:chr6:60239590-60239314 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:285
               
               
               Alignm identity:212
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):18, 24

               
               
               Conread position:47-351
               
               
               Cow position:chr6:55546359-55546069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:215
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):12, 28

               
               
               Conread position:47-382
               
               
               Cow position:chr6:28414845-28414510 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:345
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):12, 17

               
               
               Conread position:47-395
               
               
               Cow position:chr6:8788236-8787887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 94

               
               
               Conread position:48-318
               
               
               Cow position:chr6:65871701-65871963 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:187
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):78, 8

               
               
               Conread position:48-354
               
               
               Cow position:chr6:22503120-22502802 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:229
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):78, 221

               
               
               Conread position:49-166
               
               
               Cow position:chr6:17246033-17245914 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:122
               
               
               Alignm identity:102
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):77, 37

               
               
               Conread position:49-242
               
               
               Cow position:chr6:62326949-62327138 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:49-259
               
               
               Cow position:chr6:57540034-57540248 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:216
               
               
               Alignm identity:153
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):77, 55

               
               
               Conread position:49-274
               
               
               Cow position:chr6:33276843-33277071 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:179
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):78, 50

               
               
               Conread position:49-344
               
               
               Cow position:chr6:46292534-46292249 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:218
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 70

               
               
               Conread position:49-349
               
               
               Cow position:chr6:43345656-43345338 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:319
               
               
               Alignm identity:220
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):78, 0

               
               
               Conread position:49-354
               
               
               Cow position:chr6:48187777-48187470 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):83, 71

               
               
               Conread position:49-363
               
               
               Cow position:chr6:28318213-28318515 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):252, 73

               
               
               Conread position:49-365
               
               
               Cow position:chr6:54144105-54144422 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):77, 261

               
               
               Conread position:49-366
               
               
               Cow position:chr6:12092180-12091872 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 0

               
               
               Conread position:49-398
               
               
               Cow position:chr6:54701344-54701696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):84, 187

               
               
               Conread position:49-408
               
               
               Cow position:chr6:63720003-63720362 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:272
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):197, 60

               
               
               Conread position:50-166
               
               
               Cow position:chr6:20929902-20929782 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:99
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):74, 0

               
               
               Conread position:50-172
               
               
               Cow position:chr6:39158154-39158033 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:123
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):94, 0

               
               
               Conread position:50-198
               
               
               Cow position:chr6:21812535-21812684 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:150
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:50-223
               
               
               Cow position:chr6:36011500-36011668 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:176
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):117, 16

               
               
               Conread position:50-229
               
               
               Cow position:chr6:10237176-10237350 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:181
               
               
               Alignm identity:130
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):145, 77

               
               
               Conread position:50-250
               
               
               Cow position:chr6:3545509-3545696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):145, 64

               
               
               Conread position:50-302
               
               
               Cow position:chr6:53731326-53731581 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:201
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:50-325
               
               
               Cow position:chr6:11160204-11159923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:282
               
               
               Alignm identity:187
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):80, 0

               
               
               Conread position:50-349
               
               
               Cow position:chr6:37467734-37467436 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:221
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):129, 122

               
               
               Conread position:50-354
               
               
               Cow position:chr6:12652011-12652317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:210
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):132, 184

               
               
               Conread position:50-360
               
               
               Cow position:chr6:47305144-47305455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:232
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 167

               
               
               Conread position:50-365
               
               
               Cow position:chr6:9751235-9750937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:316
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:50-365
               
               
               Cow position:chr6:24545422-24545733 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:206
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):224, 90

               
               
               Conread position:50-385
               
               
               Cow position:chr6:52412659-52412998 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):77, 244

               
               
               Conread position:50-388
               
               
               Cow position:chr6:33918046-33917696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:355
               
               
               Alignm identity:241
               
               
               Alignm E-value:3e-38
               
               
               Alignm gaps (pig, cow):77, 139

               
               
               Conread position:50-391
               
               
               Cow position:chr6:16423504-16423847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:266
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):75, 99

               
               
               Conread position:50-398
               
               
               Cow position:chr6:16191472-16191824 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:362
               
               
               Alignm identity:244
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):77, 16

               
               
               Conread position:50-398
               
               
               Cow position:chr6:63299218-63298878 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:352
               
               
               Alignm identity:230
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):192, 16

               
               
               Conread position:50-515
               
               
               Cow position:chr6:37199740-37199264 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:489
               
               
               Alignm identity:335
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 271

               
               
               Conread position:50-596
               
               
               Cow position:chr6:46865788-46865235 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:559
               
               
               Alignm identity:329
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):125, 205

               
               
               Conread position:52-283
               
               
               Cow position:chr6:57680629-57680390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:244
               
               
               Alignm identity:176
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):8, 173

               
               
               Conread position:52-395
               
               
               Cow position:chr6:32269063-32268738 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:240
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):29, 0

               
               
               Conread position:52-398
               
               
               Cow position:chr6:21062076-21061734 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:247
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):116, 62

               
               
               Conread position:52-414
               
               
               Cow position:chr6:53519816-53519456 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:365
               
               
               Alignm identity:255
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):119, 98

               
               
               Conread position:53-173
               
               
               Cow position:chr6:17220646-17220529 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:121
               
               
               Alignm identity:96
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):95, 0

               
               
               Conread position:53-220
               
               
               Cow position:chr6:37603331-37603496 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:168
               
               
               Alignm identity:128
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):148, 0

               
               
               Conread position:53-247
               
               
               Cow position:chr6:8187711-8187516 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:202
               
               
               Alignm identity:151
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):73, 103

               
               
               Conread position:55-275
               
               
               Cow position:chr6:57535893-57535667 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:156
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):84, 0

               
               
               Conread position:57-384
               
               
               Cow position:chr6:65259655-65259352 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:220
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):39, 0

               
               
               Conread position:57-398
               
               
               Cow position:chr6:47799110-47799446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:344
               
               
               Alignm identity:243
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):117, 51

               
               
               Conread position:57-413
               
               
               Cow position:chr6:50577332-50577687 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:363
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):68, 192

               
               
               Conread position:59-360
               
               
               Cow position:chr6:37246616-37246327 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:310
               
               
               Alignm identity:218
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):64, 162

               
               
               Conread position:61-247
               
               
               Cow position:chr6:67436804-67436991 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:140
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):111, 0

               
               
               Conread position:62-355
               
               
               Cow position:chr6:26910052-26909763 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):53, 80

               
               
               Conread position:63-355
               
               
               Cow position:chr6:25008532-25008829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:302
               
               
               Alignm identity:217
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):172, 93

               
               
               Conread position:63-408
               
               
               Cow position:chr6:47574723-47575069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:265
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):127, 0

               
               
               Conread position:63-539
               
               
               Cow position:chr6:35993394-35993882 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:494
               
               
               Alignm identity:336
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):14, 167

               
               
               Conread position:66-257
               
               
               Cow position:chr6:62854879-62855077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):81, 0

               
               
               Conread position:66-282
               
               
               Cow position:chr6:16634399-16634176 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:66-355
               
               
               Cow position:chr6:1703635-1703910 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:211
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):66, 169

               
               
               Conread position:66-399
               
               
               Cow position:chr6:52901062-52901392 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:228
               
               
               Alignm E-value:1e-38
               
               
               Alignm gaps (pig, cow):181, 38

               
               
               Conread position:66-513
               
               
               Cow position:chr6:44566233-44566676 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:467
               
               
               Alignm identity:318
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):60, 184

               
               
               Conread position:67-362
               
               
               Cow position:chr6:1499460-1499760 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:304
               
               
               Alignm identity:234
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):60, 80

               
               
               Conread position:67-386
               
               
               Cow position:chr6:6226846-6227148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:327
               
               
               Alignm identity:225
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):74, 32

               
               
               Conread position:69-364
               
               
               Cow position:chr6:59104432-59104722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:300
               
               
               Alignm identity:207
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):262, 92

               
               
               Conread position:69-404
               
               
               Cow position:chr6:59798492-59798807 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:340
               
               
               Alignm identity:230
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):100, 49

               
               
               Conread position:69-410
               
               
               Cow position:chr6:11246589-11246932 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:350
               
               
               Alignm identity:243
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):174, 7

               
               
               Conread position:70-249
               
               
               Cow position:chr6:49604508-49604680 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:142
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):20, 0

               
               
               Conread position:70-298
               
               
               Cow position:chr6:57274294-57274520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):99, 57

               
               
               Conread position:70-299
               
               
               Cow position:chr6:35276292-35276521 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:154
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):98, 185

               
               
               Conread position:70-312
               
               
               Cow position:chr6:9838987-9839239 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:187
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):98, 0

               
               
               Conread position:70-354
               
               
               Cow position:chr6:32518048-32517771 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:209
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):102, 58

               
               
               Conread position:70-415
               
               
               Cow position:chr6:8125157-8125498 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:354
               
               
               Alignm identity:253
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):103, 46

               
               
               Conread position:70-480
               
               
               Cow position:chr6:37783239-37783640 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:424
               
               
               Alignm identity:291
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):28, 149

               
               
               Conread position:70-503
               
               
               Cow position:chr6:30973866-30974317 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:463
               
               
               Alignm identity:318
               
               
               Alignm E-value:5.60519e-45
               
               
               Alignm gaps (pig, cow):51, 120

               
               
               Conread position:71-231
               
               
               Cow position:chr6:18904517-18904355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:166
               
               
               Alignm identity:137
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):13, 79

               
               
               Conread position:71-414
               
               
               Cow position:chr6:60819341-60819679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:346
               
               
               Alignm identity:246
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):97, 184

               
               
               Conread position:72-275
               
               
               Cow position:chr6:64388865-64389070 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:149
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):53, 77

               
               
               Conread position:72-354
               
               
               Cow position:chr6:65264708-65264437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:200
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):98, 51

               
               
               Conread position:72-423
               
               
               Cow position:chr6:12668934-12669273 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:358
               
               
               Alignm identity:252
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):95, 47

               
               
               Conread position:73-351
               
               
               Cow position:chr6:17334229-17333947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:73-364
               
               
               Cow position:chr6:54936405-54936699 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:198
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):37, 173

               
               
               Conread position:73-499
               
               
               Cow position:chr6:47355652-47356062 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:430
               
               
               Alignm identity:294
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):408, 151

               
               
               Conread position:74-285
               
               
               Cow position:chr6:54287909-54288112 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:164
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):99, 43

               
               
               Conread position:74-344
               
               
               Cow position:chr6:47978205-47978481 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:181
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):7, 186

               
               
               Conread position:74-370
               
               
               Cow position:chr6:27888179-27888475 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:305
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):52, 10

               
               
               Conread position:74-404
               
               
               Cow position:chr6:39093573-39093906 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:239
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):166, 58

               
               
               Conread position:75-513
               
               
               Cow position:chr6:15447378-15446943 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:452
               
               
               Alignm identity:304
               
               
               Alignm E-value:1.4013e-45
               
               
               Alignm gaps (pig, cow):46, 302

               
               
               Conread position:76-186
               
               
               Cow position:chr6:7111657-7111765 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:111
               
               
               Alignm identity:91
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:76-339
               
               
               Cow position:chr6:53453599-53453856 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:268
               
               
               Alignm identity:193
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):96, 172

               
               
               Conread position:76-365
               
               
               Cow position:chr6:37739017-37739296 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:209
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):96, 119

               
               
               Conread position:77-249
               
               
               Cow position:chr6:59249849-59249679 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):49, 102

               
               
               Conread position:77-286
               
               
               Cow position:chr6:58364180-58363968 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:214
               
               
               Alignm identity:156
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):50, 208

               
               
               Conread position:78-322
               
               
               Cow position:chr6:19012902-19013148 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:182
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):94, 55

               
               
               Conread position:78-363
               
               
               Cow position:chr6:31854185-31854472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):47, 117

               
               
               Conread position:78-384
               
               
               Cow position:chr6:47640604-47640293 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:238
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:78-398
               
               
               Cow position:chr6:16764809-16764493 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:333
               
               
               Alignm identity:223
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):224, 61

               
               
               Conread position:80-305
               
               
               Cow position:chr6:40834638-40834408 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 0

               
               
               Conread position:80-351
               
               
               Cow position:chr6:60850555-60850274 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:206
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):47, 179

               
               
               Conread position:81-305
               
               
               Cow position:chr6:44984162-44984390 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):46, 184

               
               
               Conread position:81-515
               
               
               Cow position:chr6:60783706-60784142 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:445
               
               
               Alignm identity:296
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):101, 57

               
               
               Conread position:82-243
               
               
               Cow position:chr6:32987161-32987000 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:163
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):91, 58

               
               
               Conread position:82-297
               
               
               Cow position:chr6:55479374-55479157 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:154
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):32, 140

               
               
               Conread position:82-343
               
               
               Cow position:chr6:59108779-59109043 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:266
               
               
               Alignm identity:192
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):83, 32

               
               
               Conread position:82-384
               
               
               Cow position:chr6:26450154-26450451 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:213
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:82-416
               
               
               Cow position:chr6:14914402-14914063 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:347
               
               
               Alignm identity:245
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 35

               
               
               Conread position:82-513
               
               
               Cow position:chr6:15243088-15243513 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:443
               
               
               Alignm identity:319
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):28, 119

               
               
               Conread position:83-243
               
               
               Cow position:chr6:52705879-52705724 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):85, 115

               
               
               Conread position:83-285
               
               
               Cow position:chr6:66329674-66329874 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:142
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):91, 68

               
               
               Conread position:83-298
               
               
               Cow position:chr6:54492621-54492403 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:160
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):44, 148

               
               
               Conread position:83-348
               
               
               Cow position:chr6:24934792-24934523 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:189
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):44, 116

               
               
               Conread position:83-351
               
               
               Cow position:chr6:21610685-21610957 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:278
               
               
               Alignm identity:188
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):41, 154

               
               
               Conread position:83-360
               
               
               Cow position:chr6:12543095-12542815 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:217
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):161, 0

               
               
               Conread position:83-365
               
               
               Cow position:chr6:24504083-24503799 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:292
               
               
               Alignm identity:192
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):41, 59

               
               
               Conread position:83-498
               
               
               Cow position:chr6:47699985-47700400 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:425
               
               
               Alignm identity:276
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):76, 98

               
               
               Conread position:84-241
               
               
               Cow position:chr6:50020369-50020533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:125
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):45, 0

               
               
               Conread position:84-303
               
               
               Cow position:chr6:633522-633299 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:225
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):43, 175

               
               
               Conread position:85-279
               
               
               Cow position:chr6:31847380-31847191 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:150
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):87, 80

               
               
               Conread position:85-364
               
               
               Cow position:chr6:55763694-55763973 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:201
               
               
               Alignm E-value:1.00053e-42
               
               
               Alignm gaps (pig, cow):90, 61

               
               
               Conread position:85-414
               
               
               Cow position:chr6:120079-120412 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:248
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):42, 91

               
               
               Conread position:85-420
               
               
               Cow position:chr6:6965543-6965224 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:338
               
               
               Alignm identity:241
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):181, 13

               
               
               Conread position:86-351
               
               
               Cow position:chr6:78071-77810 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:185
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):57, 167

               
               
               Conread position:86-415
               
               
               Cow position:chr6:25615257-25614921 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:343
               
               
               Alignm identity:249
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):164, 27

               
               
               Conread position:86-415
               
               
               Cow position:chr6:48112045-48112365 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:330
               
               
               Alignm identity:259
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):41, 0

               
               
               Conread position:87-298
               
               
               Cow position:chr6:67634012-67633798 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:220
               
               
               Alignm identity:155
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):23, 145

               
               
               Conread position:87-398
               
               
               Cow position:chr6:58590116-58590426 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:321
               
               
               Alignm identity:230
               
               
               Alignm E-value:2.00386e-43
               
               
               Alignm gaps (pig, cow):53, 111

               
               
               Conread position:87-423
               
               
               Cow position:chr6:19264658-19264323 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:341
               
               
               Alignm identity:264
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):35, 174

               
               
               Conread position:89-358
               
               
               Cow position:chr6:61608351-61608625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:275
               
               
               Alignm identity:228
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):38, 0

               
               
               Conread position:91-437
               
               
               Cow position:chr6:582423-582081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:349
               
               
               Alignm identity:242
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):31, 5

               
               
               Conread position:92-311
               
               
               Cow position:chr6:57298867-57299081 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):80, 27

               
               
               Conread position:92-313
               
               
               Cow position:chr6:49694222-49694447 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:155
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):48, 171

               
               
               Conread position:92-385
               
               
               Cow position:chr6:3595641-3595930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:205
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):81, 44

               
               
               Conread position:92-393
               
               
               Cow position:chr6:27815622-27815322 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:210
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):151, 45

               
               
               Conread position:92-397
               
               
               Cow position:chr6:19446107-19446402 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:308
               
               
               Alignm identity:214
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):151, 30

               
               
               Conread position:92-398
               
               
               Cow position:chr6:7128553-7128251 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:233
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):114, 51

               
               
               Conread position:92-403
               
               
               Cow position:chr6:60739862-60740171 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:230
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):78, 163

               
               
               Conread position:92-412
               
               
               Cow position:chr6:19755230-19754912 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:329
               
               
               Alignm identity:225
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):58, 49

               
               
               Conread position:92-414
               
               
               Cow position:chr6:67323163-67323476 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:220
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):86, 112

               
               
               Conread position:92-503
               
               
               Cow position:chr6:57546369-57545989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:415
               
               
               Alignm identity:280
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):25, 79

               
               
               Conread position:93-253
               
               
               Cow position:chr6:30480860-30481020 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:162
               
               
               Alignm identity:122
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):76, 59

               
               
               Conread position:93-366
               
               
               Cow position:chr6:19292660-19292922 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:197
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):75, 24

               
               
               Conread position:93-410
               
               
               Cow position:chr6:63094081-63093748 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:337
               
               
               Alignm identity:232
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):33, 125

               
               
               Conread position:93-478
               
               
               Cow position:chr6:4692136-4691753 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:396
               
               
               Alignm identity:266
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):34, 282

               
               
               Conread position:94-220
               
               
               Cow position:chr6:57088846-57088723 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:129
               
               
               Alignm identity:106
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):76, 20

               
               
               Conread position:94-351
               
               
               Cow position:chr6:48010676-48010421 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:263
               
               
               Alignm identity:188
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):33, 143

               
               
               Conread position:94-398
               
               
               Cow position:chr6:58370593-58370903 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:320
               
               
               Alignm identity:218
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):53, 20

               
               
               Conread position:94-409
               
               
               Cow position:chr6:67574256-67574553 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:323
               
               
               Alignm identity:220
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):29, 57

               
               
               Conread position:96-240
               
               
               Cow position:chr6:22254136-22253989 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:148
               
               
               Alignm identity:120
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):75, 0

               
               
               Conread position:96-334
               
               
               Cow position:chr6:63011317-63011080 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:173
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):73, 160

               
               
               Conread position:96-398
               
               
               Cow position:chr6:9219124-9219419 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:307
               
               
               Alignm identity:219
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):76, 84

               
               
               Conread position:97-372
               
               
               Cow position:chr6:54036283-54036016 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:204
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):91, 0

               
               
               Conread position:97-509
               
               
               Cow position:chr6:17313582-17313984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:422
               
               
               Alignm identity:293
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):30, 138

               
               
               Conread position:97-511
               
               
               Cow position:chr6:46283146-46282743 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:423
               
               
               Alignm identity:301
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 30

               
               
               Conread position:98-406
               
               
               Cow position:chr6:57571326-57571638 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:315
               
               
               Alignm identity:240
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):29, 308

               
               
               Conread position:99-285
               
               
               Cow position:chr6:29266059-29266244 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):69, 40

               
               
               Conread position:99-365
               
               
               Cow position:chr6:16316160-16316437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:196
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):48, 41

               
               
               Conread position:101-261
               
               
               Cow position:chr6:65852687-65852530 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:122
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):103, 0

               
               
               Conread position:101-351
               
               
               Cow position:chr6:4559447-4559200 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:189
               
               
               Alignm E-value:5.04467e-44
               
               
               Alignm gaps (pig, cow):68, 37

               
               
               Conread position:102-225
               
               
               Cow position:chr6:33365480-33365594 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:124
               
               
               Alignm identity:100
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:102-420
               
               
               Cow position:chr6:19996477-19996787 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:322
               
               
               Alignm identity:230
               
               
               Alignm E-value:1.96182e-44
               
               
               Alignm gaps (pig, cow):20, 38

               
               
               Conread position:103-239
               
               
               Cow position:chr6:50509536-50509670 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:113
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):65, 105

               
               
               Conread position:103-351
               
               
               Cow position:chr6:38609826-38610074 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:185
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):73, 155

               
               
               Conread position:104-284
               
               
               Cow position:chr6:602952-603135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:147
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):80, 39

               
               
               Conread position:104-398
               
               
               Cow position:chr6:32287497-32287788 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:299
               
               
               Alignm identity:225
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):9, 25

               
               
               Conread position:105-285
               
               
               Cow position:chr6:55508720-55508534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-29
               
               
               Alignm gaps (pig, cow):22, 0

               
               
               Conread position:106-349
               
               
               Cow position:chr6:7724958-7724716 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:165
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):63, 133

               
               
               Conread position:107-301
               
               
               Cow position:chr6:30123330-30123132 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):62, 0

               
               
               Conread position:108-259
               
               
               Cow position:chr6:40104598-40104749 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):84, 137

               
               
               Conread position:108-398
               
               
               Cow position:chr6:60118009-60118300 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:207
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):19, 261

               
               
               Conread position:108-423
               
               
               Cow position:chr6:45388194-45388501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:317
               
               
               Alignm identity:216
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):181, 6

               
               
               Conread position:109-232
               
               
               Cow position:chr6:62017396-62017520 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:125
               
               
               Alignm identity:101
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:109-300
               
               
               Cow position:chr6:44756907-44757088 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):5, 0

               
               
               Conread position:109-358
               
               
               Cow position:chr6:15022697-15022434 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:190
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):15, 49

               
               
               Conread position:109-360
               
               
               Cow position:chr6:48988301-48988545 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:256
               
               
               Alignm identity:186
               
               
               Alignm E-value:7e-36
               
               
               Alignm gaps (pig, cow):64, 144

               
               
               Conread position:109-386
               
               
               Cow position:chr6:28156282-28156022 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:279
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):49, 34

               
               
               Conread position:109-392
               
               
               Cow position:chr6:29000057-28999793 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:210
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):213, 5

               
               
               Conread position:109-423
               
               
               Cow position:chr6:38640096-38640409 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:318
               
               
               Alignm identity:229
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):149, 5

               
               
               Conread position:110-351
               
               
               Cow position:chr6:34404902-34404661 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:245
               
               
               Alignm identity:163
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):59, 143

               
               
               Conread position:110-354
               
               
               Cow position:chr6:47616748-47616501 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:167
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):17, 154

               
               
               Conread position:110-385
               
               
               Cow position:chr6:55209421-55209696 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:280
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):63, 134

               
               
               Conread position:110-386
               
               
               Cow position:chr6:21399892-21399616 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:197
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):17, 115

               
               
               Conread position:110-414
               
               
               Cow position:chr6:43135079-43134772 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:313
               
               
               Alignm identity:218
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):46, 94

               
               
               Conread position:110-475
               
               
               Cow position:chr6:3081265-3080876 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:393
               
               
               Alignm identity:265
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):61, 99

               
               
               Conread position:114-336
               
               
               Cow position:chr6:12829353-12829134 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:228
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-36
               
               
               Alignm gaps (pig, cow):142, 26

               
               
               Conread position:114-351
               
               
               Cow position:chr6:40024179-40024418 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:242
               
               
               Alignm identity:158
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):57, 177

               
               
               Conread position:114-398
               
               
               Cow position:chr6:53841630-53841353 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:193
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):263, 74

               
               
               Conread position:114-404
               
               
               Cow position:chr6:51840139-51840437 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:301
               
               
               Alignm identity:194
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):69, 246

               
               
               Conread position:115-396
               
               
               Cow position:chr6:60667291-60667561 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:284
               
               
               Alignm identity:199
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):54, 24

               
               
               Conread position:115-397
               
               
               Cow position:chr6:48803767-48803487 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:287
               
               
               Alignm identity:192
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):34, 223

               
               
               Conread position:118-351
               
               
               Cow position:chr6:17704692-17704937 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:171
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):55, 0

               
               
               Conread position:118-370
               
               
               Cow position:chr6:5413692-5413947 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:257
               
               
               Alignm identity:143
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):34, 137

               
               
               Conread position:118-407
               
               
               Cow position:chr6:50975931-50976210 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:291
               
               
               Alignm identity:215
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):140, 78

               
               
               Conread position:119-515
               
               
               Cow position:chr6:10225766-10225398 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:402
               
               
               Alignm identity:280
               
               
               Alignm E-value:9.99995e-41
               
               
               Alignm gaps (pig, cow):5, 114

               
               
               Conread position:121-396
               
               
               Cow position:chr6:23402113-23401842 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:196
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):51, 0

               
               
               Conread position:122-284
               
               
               Cow position:chr6:358013-357847 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:167
               
               
               Alignm identity:123
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:122-298
               
               
               Cow position:chr6:33150529-33150355 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:177
               
               
               Alignm identity:132
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):118, 0

               
               
               Conread position:122-307
               
               
               Cow position:chr6:19351277-19351096 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:146
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):135, 0

               
               
               Conread position:122-314
               
               
               Cow position:chr6:38233837-38234028 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):121, 21

               
               
               Conread position:122-351
               
               
               Cow position:chr6:1371350-1371120 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:173
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):51, 17

               
               
               Conread position:122-351
               
               
               Cow position:chr6:50467012-50467241 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):49, 111

               
               
               Conread position:122-351
               
               
               Cow position:chr6:62929373-62929601 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):68, 50

               
               
               Conread position:122-366
               
               
               Cow position:chr6:31814860-31814628 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:181
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):50, 69

               
               
               Conread position:122-429
               
               
               Cow position:chr6:36189574-36189883 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:311
               
               
               Alignm identity:205
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):45, 193

               
               
               Conread position:122-430
               
               
               Cow position:chr6:21234921-21235229 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:312
               
               
               Alignm identity:213
               
               
               Alignm E-value:4.00001e-40
               
               
               Alignm gaps (pig, cow):120, 94

               
               
               Conread position:123-332
               
               
               Cow position:chr6:37376645-37376427 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:219
               
               
               Alignm identity:168
               
               
               Alignm E-value:4.00001e-41
               
               
               Alignm gaps (pig, cow):18, 0

               
               
               Conread position:123-351
               
               
               Cow position:chr6:16266597-16266830 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:172
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):50, 0

               
               
               Conread position:123-351
               
               
               Cow position:chr6:51092075-51092302 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:158
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):46, 115

               
               
               Conread position:123-399
               
               
               Cow position:chr6:19045503-19045776 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:186
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):32, 14

               
               
               Conread position:123-410
               
               
               Cow position:chr6:35725973-35726260 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:293
               
               
               Alignm identity:207
               
               
               Alignm E-value:1e-39
               
               
               Alignm gaps (pig, cow):53, 140

               
               
               Conread position:123-511
               
               
               Cow position:chr6:60446138-60446533 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:399
               
               
               Alignm identity:250
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):46, 178

               
               
               Conread position:124-249
               
               
               Cow position:chr6:14153238-14153118 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:102
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):49, 15

               
               
               Conread position:124-249
               
               
               Cow position:chr6:61571906-61572031 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:127
               
               
               Alignm identity:100
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):44, 74

               
               
               Conread position:124-354
               
               
               Cow position:chr6:16261665-16261887 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:171
               
               
               Alignm E-value:1e-31
               
               
               Alignm gaps (pig, cow):49, 21

               
               
               Conread position:125-343
               
               
               Cow position:chr6:44127486-44127708 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:153
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):46, 213

               
               
               Conread position:125-354
               
               
               Cow position:chr6:377011-377234 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:169
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):47, 17

               
               
               Conread position:125-433
               
               
               Cow position:chr6:54573123-54573446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:325
               
               
               Alignm identity:221
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):49, 292

               
               
               Conread position:127-269
               
               
               Cow position:chr6:1510470-1510611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:106
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):133, 0

               
               
               Conread position:127-364
               
               
               Cow position:chr6:22850363-22850135 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:240
               
               
               Alignm identity:169
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):42, 81

               
               
               Conread position:127-414
               
               
               Cow position:chr6:21590575-21590875 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:306
               
               
               Alignm identity:206
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):94, 18

               
               
               Conread position:128-384
               
               
               Cow position:chr6:12845262-12845514 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:264
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):51, 133

               
               
               Conread position:128-410
               
               
               Cow position:chr6:54854132-54854414 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:296
               
               
               Alignm identity:201
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):41, 67

               
               
               Conread position:129-268
               
               
               Cow position:chr6:54546987-54547126 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:141
               
               
               Alignm identity:105
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):45, 107

               
               
               Conread position:129-398
               
               
               Cow position:chr6:21514735-21514455 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:283
               
               
               Alignm identity:197
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):39, 146

               
               
               Conread position:129-420
               
               
               Cow position:chr6:58597620-58597329 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:297
               
               
               Alignm identity:226
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):115, 83

               
               
               Conread position:132-243
               
               
               Cow position:chr6:56849030-56848918 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:113
               
               
               Alignm identity:92
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):89, 0

               
               
               Conread position:133-351
               
               
               Cow position:chr6:10039609-10039829 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:158
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):39, 77

               
               
               Conread position:133-364
               
               
               Cow position:chr6:55161353-55161590 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:239
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):36, 127

               
               
               Conread position:133-406
               
               
               Cow position:chr6:61524310-61524046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:201
               
               
               Alignm E-value:9.99967e-42
               
               
               Alignm gaps (pig, cow):117, 12

               
               
               Conread position:133-410
               
               
               Cow position:chr6:46173370-46173093 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:286
               
               
               Alignm identity:188
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):37, 111

               
               
               Conread position:134-364
               
               
               Cow position:chr6:51526380-51526609 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:233
               
               
               Alignm identity:161
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):35, 121

               
               
               Conread position:135-384
               
               
               Cow position:chr6:59603317-59603069 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:195
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):110, 46

               
               
               Conread position:136-366
               
               
               Cow position:chr6:54208248-54208014 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:169
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):37, 26

               
               
               Conread position:137-366
               
               
               Cow position:chr6:17549089-17548853 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:162
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):113, 0

               
               
               Conread position:140-366
               
               
               Cow position:chr6:26043647-26043859 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:227
               
               
               Alignm identity:159
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):77, 0

               
               
               Conread position:140-396
               
               
               Cow position:chr6:6672997-6673258 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:267
               
               
               Alignm identity:186
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):12, 18

               
               
               Conread position:140-397
               
               
               Cow position:chr6:61168670-61168907 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:258
               
               
               Alignm identity:192
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):56, 0

               
               
               Conread position:140-498
               
               
               Cow position:chr6:59718691-59719046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:366
               
               
               Alignm identity:256
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):111, 131

               
               
               Conread position:141-392
               
               
               Cow position:chr6:7119714-7119472 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:253
               
               
               Alignm identity:180
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):121, 46

               
               
               Conread position:142-255
               
               
               Cow position:chr6:61644939-61644821 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:119
               
               
               Alignm identity:96
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):32, 0

               
               
               Conread position:142-406
               
               
               Cow position:chr6:60274109-60273850 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:269
               
               
               Alignm identity:195
               
               
               Alignm E-value:3e-37
               
               
               Alignm gaps (pig, cow):74, 14

               
               
               Conread position:144-384
               
               
               Cow position:chr6:51968963-51969215 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:179
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):17, 179

               
               
               Conread position:145-364
               
               
               Cow position:chr6:27240106-27239886 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:158
               
               
               Alignm E-value:2e-32
               
               
               Alignm gaps (pig, cow):97, 116

               
               
               Conread position:146-398
               
               
               Cow position:chr6:17794855-17794611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:254
               
               
               Alignm identity:182
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):28, 43

               
               
               Conread position:147-412
               
               
               Cow position:chr6:9719021-9718745 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:281
               
               
               Alignm identity:193
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):29, 5

               
               
               Conread position:148-418
               
               
               Cow position:chr6:13564987-13565257 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:276
               
               
               Alignm identity:190
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):95, 143

               
               
               Conread position:149-399
               
               
               Cow position:chr6:66375426-66375181 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:251
               
               
               Alignm identity:191
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):96, 0

               
               
               Conread position:149-513
               
               
               Cow position:chr6:68376417-68376066 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:372
               
               
               Alignm identity:254
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):103, 22

               
               
               Conread position:153-398
               
               
               Cow position:chr6:143460-143222 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:174
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):19, 0

               
               
               Conread position:154-355
               
               
               Cow position:chr6:17245697-17245503 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:205
               
               
               Alignm identity:154
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):67, 8

               
               
               Conread position:154-399
               
               
               Cow position:chr6:10487496-10487739 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:247
               
               
               Alignm identity:167
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):98, 207

               
               
               Conread position:156-421
               
               
               Cow position:chr6:37332018-37332287 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:208
               
               
               Alignm E-value:0
               
               
               Alignm gaps (pig, cow):90, 63

               
               
               Conread position:159-395
               
               
               Cow position:chr6:37462936-37463172 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:241
               
               
               Alignm identity:164
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):92, 52

               
               
               Conread position:161-384
               
               
               Cow position:chr6:20929600-20929375 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:231
               
               
               Alignm identity:165
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):76, 45

               
               
               Conread position:163-342
               
               
               Cow position:chr6:54365085-54364895 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:138
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):87, 0

               
               
               Conread position:164-364
               
               
               Cow position:chr6:55205393-55205189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:143
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):82, 153

               
               
               Conread position:164-398
               
               
               Cow position:chr6:23025193-23024948 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:250
               
               
               Alignm identity:172
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):18, 10

               
               
               Conread position:166-400
               
               
               Cow position:chr6:2623703-2623928 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:235
               
               
               Alignm identity:161
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):97, 0

               
               
               Conread position:166-437
               
               
               Cow position:chr6:23466108-23465844 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:273
               
               
               Alignm identity:199
               
               
               Alignm E-value:3.99931e-42
               
               
               Alignm gaps (pig, cow):211, 79

               
               
               Conread position:167-364
               
               
               Cow position:chr6:8599927-8600119 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:199
               
               
               Alignm identity:140
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):189, 76

               
               
               Conread position:167-402
               
               
               Cow position:chr6:58608517-58608289 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:159
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):169, 77

               
               
               Conread position:167-414
               
               
               Cow position:chr6:33509712-33509953 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:249
               
               
               Alignm identity:169
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 91

               
               
               Conread position:167-437
               
               
               Cow position:chr6:67281819-67282084 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:272
               
               
               Alignm identity:177
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):91, 73

               
               
               Conread position:168-398
               
               
               Cow position:chr6:22985935-22985700 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:236
               
               
               Alignm identity:168
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:169-352
               
               
               Cow position:chr6:694223-694044 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:185
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-35
               
               
               Alignm gaps (pig, cow):94, 47

               
               
               Conread position:169-384
               
               
               Cow position:chr6:4702899-4702685 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:218
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):84, 49

               
               
               Conread position:171-403
               
               
               Cow position:chr6:17068723-17068490 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:234
               
               
               Alignm identity:173
               
               
               Alignm E-value:5.00264e-43
               
               
               Alignm gaps (pig, cow):86, 0

               
               
               Conread position:172-343
               
               
               Cow position:chr6:36493622-36493443 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:139
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):80, 96

               
               
               Conread position:174-351
               
               
               Cow position:chr6:6724431-6724611 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:131
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):5, 154

               
               
               Conread position:176-402
               
               
               Cow position:chr6:67643760-67643534 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:229
               
               
               Alignm identity:167
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):24, 19

               
               
               Conread position:177-397
               
               
               Cow position:chr6:18118120-18117898 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:224
               
               
               Alignm identity:160
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):77, 139

               
               
               Conread position:177-398
               
               
               Cow position:chr6:9302784-9302567 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:223
               
               
               Alignm identity:157
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):13, 74

               
               
               Conread position:177-399
               
               
               Cow position:chr6:33929618-33929393 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:226
               
               
               Alignm identity:151
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):66, 0

               
               
               Conread position:177-412
               
               
               Cow position:chr6:16288120-16287893 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:163
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):227, 73

               
               
               Conread position:178-347
               
               
               Cow position:chr6:7170414-7170246 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:133
               
               
               Alignm E-value:3e-29
               
               
               Alignm gaps (pig, cow):140, 68

               
               
               Conread position:178-366
               
               
               Cow position:chr6:36284175-36284364 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:190
               
               
               Alignm identity:134
               
               
               Alignm E-value:8e-27
               
               
               Alignm gaps (pig, cow):65, 0

               
               
               Conread position:178-398
               
               
               Cow position:chr6:37395475-37395247 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:230
               
               
               Alignm identity:163
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):72, 189

               
               
               Conread position:179-414
               
               
               Cow position:chr6:61142630-61142394 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:238
               
               
               Alignm identity:155
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):79, 209

               
               
               Conread position:179-421
               
               
               Cow position:chr6:28179012-28178779 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:246
               
               
               Alignm identity:172
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):86, 45

               
               
               Conread position:179-476
               
               
               Cow position:chr6:60516762-60517048 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:298
               
               
               Alignm identity:207
               
               
               Alignm E-value:9e-38
               
               
               Alignm gaps (pig, cow):21, 0

               
               
               Conread position:180-343
               
               
               Cow position:chr6:67615496-67615332 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-32
               
               
               Alignm gaps (pig, cow):73, 0

               
               
               Conread position:181-412
               
               
               Cow position:chr6:60468173-60468406 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:237
               
               
               Alignm identity:173
               
               
               Alignm E-value:8e-37
               
               
               Alignm gaps (pig, cow):76, 205

               
               
               Conread position:181-414
               
               
               Cow position:chr6:24536606-24536360 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:248
               
               
               Alignm identity:168
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):69, 196

               
               
               Conread position:181-499
               
               
               Cow position:chr6:35896404-35896092 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:328
               
               
               Alignm identity:217
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):175, 54

               
               
               Conread position:181-513
               
               
               Cow position:chr6:23353489-23353806 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:339
               
               
               Alignm identity:227
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):241, 80

               
               
               Conread position:182-351
               
               
               Cow position:chr6:5845235-5845065 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:171
               
               
               Alignm identity:121
               
               
               Alignm E-value:2e-23
               
               
               Alignm gaps (pig, cow):67, 0

               
               
               Conread position:183-402
               
               
               Cow position:chr6:59770165-59770379 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:221
               
               
               Alignm identity:156
               
               
               Alignm E-value:3e-28
               
               
               Alignm gaps (pig, cow):78, 141

               
               
               Conread position:188-364
               
               
               Cow position:chr6:6195168-6194984 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:186
               
               
               Alignm identity:134
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):62, 177

               
               
               Conread position:190-384
               
               
               Cow position:chr6:68652408-68652212 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:198
               
               
               Alignm identity:140
               
               
               Alignm E-value:7e-26
               
               
               Alignm gaps (pig, cow):54, 179

               
               
               Conread position:193-397
               
               
               Cow position:chr6:60144251-60144046 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:206
               
               
               Alignm identity:151
               
               
               Alignm E-value:2e-35
               
               
               Alignm gaps (pig, cow):79, 0

               
               
               Conread position:197-392
               
               
               Cow position:chr6:31078920-31078722 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:148
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):102, 46

               
               
               Conread position:197-398
               
               
               Cow position:chr6:68816118-68816319 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:204
               
               
               Alignm identity:144
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):68, 82

               
               
               Conread position:199-398
               
               
               Cow position:chr6:69500418-69500614 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:200
               
               
               Alignm identity:135
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:199-421
               
               
               Cow position:chr6:3350973-3351204 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:232
               
               
               Alignm identity:168
               
               
               Alignm E-value:2e-34
               
               
               Alignm gaps (pig, cow):59, 0

               
               
               Conread position:200-349
               
               
               Cow position:chr6:55417572-55417424 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:151
               
               
               Alignm identity:111
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):92, 61

               
               
               Conread position:200-358
               
               
               Cow position:chr6:28973080-28972923 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:160
               
               
               Alignm identity:116
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):56, 67

               
               
               Conread position:200-384
               
               
               Cow position:chr6:32853141-32853326 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:144
               
               
               Alignm E-value:6e-34
               
               
               Alignm gaps (pig, cow):48, 62

               
               
               Conread position:200-403
               
               
               Cow position:chr6:2078865-2078657 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:209
               
               
               Alignm identity:159
               
               
               Alignm E-value:3e-39
               
               
               Alignm gaps (pig, cow):54, 0

               
               
               Conread position:200-413
               
               
               Cow position:chr6:1422440-1422652 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:215
               
               
               Alignm identity:152
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):25, 195

               
               
               Conread position:201-351
               
               
               Cow position:chr6:31806978-31806822 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:157
               
               
               Alignm identity:114
               
               
               Alignm E-value:4e-21
               
               
               Alignm gaps (pig, cow):70, 0

               
               
               Conread position:202-421
               
               
               Cow position:chr6:67451415-67451197 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:222
               
               
               Alignm identity:152
               
               
               Alignm E-value:2e-25
               
               
               Alignm gaps (pig, cow):55, 15

               
               
               Conread position:206-366
               
               
               Cow position:chr6:32517139-32516988 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:161
               
               
               Alignm identity:125
               
               
               Alignm E-value:3e-27
               
               
               Alignm gaps (pig, cow):69, 0

               
               
               Conread position:207-397
               
               
               Cow position:chr6:66570399-66570592 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:140
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):40, 0

               
               
               Conread position:210-398
               
               
               Cow position:chr6:34119390-34119201 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:191
               
               
               Alignm identity:140
               
               
               Alignm E-value:4e-30
               
               
               Alignm gaps (pig, cow):32, 112

               
               
               Conread position:212-501
               
               
               Cow position:chr6:60266215-60265930 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:294
               
               
               Alignm identity:199
               
               
               Alignm E-value:1e-30
               
               
               Alignm gaps (pig, cow):50, 71

               
               
               Conread position:213-405
               
               
               Cow position:chr6:19259377-19259182 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:196
               
               
               Alignm identity:143
               
               
               Alignm E-value:4e-31
               
               
               Alignm gaps (pig, cow):33, 0

               
               
               Conread position:216-406
               
               
               Cow position:chr6:49437303-49437492 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:192
               
               
               Alignm identity:136
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):40, 185

               
               
               Conread position:217-358
               
               
               Cow position:chr6:36921003-36920862 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:110
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):48, 15

               
               
               Conread position:219-504
               
               
               Cow position:chr6:63065798-63066077 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:295
               
               
               Alignm identity:209
               
               
               Alignm E-value:5e-33
               
               
               Alignm gaps (pig, cow):18, 46

               
               
               Conread position:220-398
               
               
               Cow position:chr6:48097627-48097446 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:184
               
               
               Alignm identity:135
               
               
               Alignm E-value:2e-26
               
               
               Alignm gaps (pig, cow):79, 24

               
               
               Conread position:220-398
               
               
               Cow position:chr6:68685529-68685706 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:180
               
               
               Alignm identity:127
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):29, 38

               
               
               Conread position:220-405
               
               
               Cow position:chr6:62056587-62056774 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:188
               
               
               Alignm identity:141
               
               
               Alignm E-value:2e-33
               
               
               Alignm gaps (pig, cow):37, 0

               
               
               Conread position:221-414
               
               
               Cow position:chr6:50504429-50504625 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:197
               
               
               Alignm identity:137
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:222-415
               
               
               Cow position:chr6:26155128-26155316 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:194
               
               
               Alignm identity:137
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:224-408
               
               
               Cow position:chr6:53089986-53090169 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:187
               
               
               Alignm identity:137
               
               
               Alignm E-value:9e-28
               
               
               Alignm gaps (pig, cow):28, 164

               
               
               Conread position:226-399
               
               
               Cow position:chr6:53546016-53546189 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:123
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:229-402
               
               
               Cow position:chr6:58725359-58725524 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:174
               
               
               Alignm identity:129
               
               
               Alignm E-value:6e-24
               
               
               Alignm gaps (pig, cow):25, 0

               
               
               Conread position:242-406
               
               
               Cow position:chr6:58459718-58459879 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:165
               
               
               Alignm identity:118
               
               
               Alignm E-value:5e-22
               
               
               Alignm gaps (pig, cow):131, 0

               
               
               Conread position:255-398
               
               
               Cow position:chr6:30023895-30024038 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:144
               
               
               Alignm identity:106
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:260-414
               
               
               Cow position:chr6:1866747-1866897 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:155
               
               
               Alignm identity:115
               
               
               Alignm E-value:5e-23
               
               
               Alignm gaps (pig, cow):28, 0

               
               
               Conread position:261-412
               
               
               Cow position:chr6:18422974-18422825 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:154
               
               
               Alignm identity:114
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):76, 62

               
               
               Conread position:263-442
               
               
               Cow position:chr6:43651770-43651949 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:182
               
               
               Alignm identity:128
               
               
               Alignm E-value:2e-22
               
               
               Alignm gaps (pig, cow):150, 131

               
               
               Conread position:263-515
               
               
               Cow position:chr6:58227390-58227647 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:265
               
               
               Alignm identity:182
               
               
               Alignm E-value:7e-25
               
               
               Alignm gaps (pig, cow):78, 168

               
               
               Conread position:273-415
               
               
               Cow position:chr6:51933582-51933717 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:143
               
               
               Alignm identity:110
               
               
               Alignm E-value:1e-21
               
               
               Alignm gaps (pig, cow):48, 0

               
               
               Conread position:276-413
               
               
               Cow position:chr6:23938091-23938228 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:138
               
               
               Alignm identity:109
               
               
               Alignm E-value:1e-28
               
               
               Alignm gaps (pig, cow):0, 0

               
               
               Conread position:288-421
               
               
               Cow position:chr6:28900369-28900500 (view  custom track)UCSC Genome Browser
               
               
               Alignm length:134
               
               
               Alignm identity:104
               
               
               Alignm E-value:2e-24
               
               
               Alignm gaps (pig, cow):112, 0
Show alignments to all cow chromosomes.