Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100001_E10.3.233 |
| Conread position: | 1-166 |
| Cow position: | chr19:22477210-22477045 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-166 |
| Cow position: | chr19:2419052-2418889 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-166 |
| Cow position: | chr19:2445045-2444882 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 155 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-166 |
| Cow position: | chr19:22524380-22524217 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 153 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 3-174 |
| Cow position: | chr19:22707464-22707292 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 0 |
| Conread position: | 163-349 |
| Cow position: | chr19:22475914-22475728 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 163-349 |
| Cow position: | chr19:22523027-22522841 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 165 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-349 |
| Cow position: | chr19:2418178-2417995 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 161 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-349 |
| Cow position: | chr19:2444177-2443994 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 166-349 |
| Cow position: | chr19:22706962-22706779 (view UCSC Genome Browser custom track) |
| Alignm length: | 186 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 148, 139 |
| Conread position: | 348-511 |
| Cow position: | chr19:22706204-22706041 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-520 |
| Cow position: | chr19:2417719-2417547 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 156 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-520 |
| Cow position: | chr19:2443914-2443742 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-520 |
| Cow position: | chr19:22475643-22475471 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 348-520 |
| Cow position: | chr19:22522756-22522584 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 145 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 508-641 |
| Cow position: | chr19:22705781-22705649 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 101 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 8, 0 |
| Conread position: | 516-641 |
| Cow position: | chr19:2417464-2417339 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 118 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 516-641 |
| Cow position: | chr19:22522487-22522362 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 107 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 516-644 |
| Cow position: | chr19:2443647-2443519 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 121 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 516-649 |
| Cow position: | chr19:22475389-22475256 (view UCSC Genome Browser custom track) |
| Alignm length: | 134 |
| Alignm identity: | 118 |
| Alignm E-value: | 8e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 636-950 |
| Cow position: | chr19:22705181-22704867 (view UCSC Genome Browser custom track) |
| Alignm length: | 315 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 639-950 |
| Cow position: | chr19:2416942-2416631 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 639-950 |
| Cow position: | chr19:2443358-2443047 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 639-950 |
| Cow position: | chr19:22474114-22473803 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 276 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 639-950 |
| Cow position: | chr19:22522100-22521789 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 940-1153 |
| Cow position: | chr19:22521162-22520948 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 182 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 948-1153 |
| Cow position: | chr19:2416547-2416342 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 192 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 948-1153 |
| Cow position: | chr19:2442963-2442758 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 191 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 948-1153 |
| Cow position: | chr19:22473168-22472963 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 189 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 948-1153 |
| Cow position: | chr19:22704753-22704548 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1135-1278 |
| Cow position: | chr19:22704492-22704349 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1150-1294 |
| Cow position: | chr19:2416016-2415873 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 133 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 0 |
| Conread position: | 1151-1280 |
| Cow position: | chr19:22471801-22471672 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 105 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1151-1294 |
| Cow position: | chr19:2442226-2442084 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 131 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 1151-1294 |
| Cow position: | chr19:22519699-22519557 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 131 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 137, 0 |
| Conread position: | 1280-1452 |
| Cow position: | chr19:2415797-2415625 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1280-1452 |
| Cow position: | chr19:2442008-2441836 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 166 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1280-1452 |
| Cow position: | chr19:22471587-22471415 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 169 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1280-1452 |
| Cow position: | chr19:22519481-22519309 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 167 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1280-1457 |
| Cow position: | chr19:22703524-22703347 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 170 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1450-1554 |
| Cow position: | chr19:2415361-2415257 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 98 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1450-1554 |
| Cow position: | chr19:2441755-2441651 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 92 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1450-1554 |
| Cow position: | chr19:22471202-22471098 (view UCSC Genome Browser custom track) |
| Alignm length: | 105 |
| Alignm identity: | 89 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1547-1650 |
| Cow position: | chr19:22470584-22470482 (view UCSC Genome Browser custom track) |
| Alignm length: | 104 |
| Alignm identity: | 88 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 5, 0 |
| Conread position: | 1553-1652 |
| Cow position: | chr19:2415139-2415040 (view UCSC Genome Browser custom track) |
| Alignm length: | 100 |
| Alignm identity: | 97 |
| Alignm E-value: | 5e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1651-1780 |
| Cow position: | chr19:22702806-22702678 (view UCSC Genome Browser custom track) |
| Alignm length: | 131 |
| Alignm identity: | 101 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 40, 45 |
| Conread position: | 1651-1873 |
| Cow position: | chr19:22469163-22468941 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 184 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 153, 140 |
| Conread position: | 1651-1877 |
| Cow position: | chr19:22517854-22517628 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1651-1878 |
| Cow position: | chr19:2440162-2439934 (view UCSC Genome Browser custom track) |
| Alignm length: | 230 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 201 |
| Conread position: | 1651-1908 |
| Cow position: | chr19:2413076-2412820 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 228, 0 |
Show alignments to all cow chromosomes.