Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 451-1109 |
| Cow position: | chr17:22473275-22473934 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 384 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 211, 227 |
| Conread position: | 451-1137 |
| Cow position: | chr17:22552323-22551637 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 428 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 221, 204 |
| Conread position: | 451-1181 |
| Cow position: | chr17:22552911-22552181 (view UCSC Genome Browser custom track) |
| Alignm length: | 734 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 204, 220 |
| Conread position: | 452-914 |
| Cow position: | chr17:22551986-22551524 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 225, 240 |
| Conread position: | 452-1010 |
| Cow position: | chr17:22589740-22589182 (view UCSC Genome Browser custom track) |
| Alignm length: | 565 |
| Alignm identity: | 334 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 190, 186 |
| Conread position: | 452-1058 |
| Cow position: | chr17:22589824-22589218 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 368 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 40, 28 |
| Conread position: | 452-1107 |
| Cow position: | chr17:22552238-22551583 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 399 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 220 |
| Conread position: | 452-1110 |
| Cow position: | chr17:22552658-22552000 (view UCSC Genome Browser custom track) |
| Alignm length: | 664 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 220 |
| Conread position: | 452-1116 |
| Cow position: | chr17:22552574-22551910 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 419 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 103 |
| Conread position: | 452-1139 |
| Cow position: | chr17:22589992-22589305 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 225, 238 |
| Conread position: | 452-1147 |
| Cow position: | chr17:22499369-22498674 (view UCSC Genome Browser custom track) |
| Alignm length: | 701 |
| Alignm identity: | 403 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 303, 319 |
| Conread position: | 452-1181 |
| Cow position: | chr17:22552490-22551761 (view UCSC Genome Browser custom track) |
| Alignm length: | 733 |
| Alignm identity: | 429 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 481-1046 |
| Cow position: | chr17:22452242-22451677 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 340 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 81, 65 |
| Conread position: | 498-1117 |
| Cow position: | chr17:22590114-22589495 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 58 |
| Conread position: | 498-1137 |
| Cow position: | chr17:22590198-22589559 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 189 |
| Conread position: | 499-1125 |
| Cow position: | chr17:22590029-22589403 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 379 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 178, 192 |
| Conread position: | 500-1181 |
| Cow position: | chr17:22552694-22552013 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 171 |
| Conread position: | 511-1128 |
| Cow position: | chr17:22452380-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 363 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 166, 179 |
| Conread position: | 512-1178 |
| Cow position: | chr17:41441121-41440455 (view UCSC Genome Browser custom track) |
| Alignm length: | 670 |
| Alignm identity: | 380 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 141, 160 |
| Conread position: | 515-924 |
| Cow position: | chr17:22589593-22589184 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 253 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 515-1047 |
| Cow position: | chr17:22552091-22551559 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 156 |
| Conread position: | 521-1145 |
| Cow position: | chr17:22499384-22498760 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 371 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 148, 133 |
| Conread position: | 521-1192 |
| Cow position: | chr17:22553093-22552422 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 391 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 114, 105 |
| Conread position: | 526-1110 |
| Cow position: | chr17:22590254-22589670 (view UCSC Genome Browser custom track) |
| Alignm length: | 589 |
| Alignm identity: | 365 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 136, 146 |
| Conread position: | 534-1138 |
| Cow position: | chr17:22552996-22552391 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 370 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 143, 153 |
| Conread position: | 561-1181 |
| Cow position: | chr17:22590303-22589683 (view UCSC Genome Browser custom track) |
| Alignm length: | 623 |
| Alignm identity: | 372 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 101, 110 |
| Conread position: | 573-1168 |
| Cow position: | chr17:22452402-22451807 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 367 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 89, 98 |
| Conread position: | 602-1176 |
| Cow position: | chr17:22499387-22498813 (view UCSC Genome Browser custom track) |
| Alignm length: | 578 |
| Alignm identity: | 347 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 60, 69 |
| Conread position: | 683-1178 |
| Cow position: | chr17:22473423-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 129, 123 |
| Conread position: | 683-1181 |
| Cow position: | chr17:22553099-22552601 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 311 |
| Alignm E-value: | 6.00036e-42 |
| Alignm gaps (pig, cow): | 309, 313 |
| Conread position: | 690-1187 |
| Cow position: | chr17:22473262-22473759 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 293, 284 |
| Conread position: | 755-1187 |
| Cow position: | chr17:22452388-22451956 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 256 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 141, 123 |
| Conread position: | 764-1178 |
| Cow position: | chr17:22499393-22498979 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.