Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 365-1176 |
| Cow position: | chr19:14940012-14940823 (view UCSC Genome Browser custom track) |
| Alignm length: | 815 |
| Alignm identity: | 494 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 439-873 |
| Cow position: | chr19:23597295-23597730 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 268 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 223, 232 |
| Conread position: | 439-1056 |
| Cow position: | chr19:23614454-23615071 (view UCSC Genome Browser custom track) |
| Alignm length: | 619 |
| Alignm identity: | 351 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 372, 367 |
| Conread position: | 439-1179 |
| Cow position: | chr19:23649736-23650478 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 223, 239 |
| Conread position: | 440-1137 |
| Cow position: | chr19:23613867-23614564 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 396 |
| Alignm E-value: | 8e-33 |
| Alignm gaps (pig, cow): | 237, 247 |
| Conread position: | 440-1178 |
| Cow position: | chr19:14940255-14940993 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 449 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 122, 115 |
| Conread position: | 441-1178 |
| Cow position: | chr19:23649486-23650223 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 230 |
| Conread position: | 447-1008 |
| Cow position: | chr19:14940514-14941075 (view UCSC Genome Browser custom track) |
| Alignm length: | 564 |
| Alignm identity: | 339 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 218, 224 |
| Conread position: | 452-1147 |
| Cow position: | chr19:14940351-14941046 (view UCSC Genome Browser custom track) |
| Alignm length: | 699 |
| Alignm identity: | 423 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 219 |
| Conread position: | 452-1168 |
| Cow position: | chr19:14959542-14958841 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 417 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 472, 201 |
| Conread position: | 452-1178 |
| Cow position: | chr19:23649665-23650391 (view UCSC Genome Browser custom track) |
| Alignm length: | 730 |
| Alignm identity: | 439 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 452-1187 |
| Cow position: | chr19:23613543-23614278 (view UCSC Genome Browser custom track) |
| Alignm length: | 739 |
| Alignm identity: | 438 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 452-1187 |
| Cow position: | chr19:23613963-23614698 (view UCSC Genome Browser custom track) |
| Alignm length: | 740 |
| Alignm identity: | 433 |
| Alignm E-value: | 8.00141e-43 |
| Alignm gaps (pig, cow): | 27, 31 |
| Conread position: | 452-1187 |
| Cow position: | chr19:23614215-23614950 (view UCSC Genome Browser custom track) |
| Alignm length: | 742 |
| Alignm identity: | 442 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 110, 94 |
| Conread position: | 452-1189 |
| Cow position: | chr19:20677978-20678716 (view UCSC Genome Browser custom track) |
| Alignm length: | 746 |
| Alignm identity: | 442 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 37, 28 |
| Conread position: | 454-1178 |
| Cow position: | chr19:14960194-14959488 (view UCSC Genome Browser custom track) |
| Alignm length: | 728 |
| Alignm identity: | 445 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 208, 44 |
| Conread position: | 457-1109 |
| Cow position: | chr19:23597061-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 395 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 205, 214 |
| Conread position: | 476-1187 |
| Cow position: | chr19:23596915-23597623 (view UCSC Genome Browser custom track) |
| Alignm length: | 714 |
| Alignm identity: | 429 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 100, 70 |
| Conread position: | 490-1095 |
| Cow position: | chr19:43570243-43569642 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 371 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 172, 200 |
| Conread position: | 491-1140 |
| Cow position: | chr19:20677681-20678330 (view UCSC Genome Browser custom track) |
| Alignm length: | 655 |
| Alignm identity: | 383 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 67, 84 |
| Conread position: | 495-1139 |
| Cow position: | chr19:23614090-23614734 (view UCSC Genome Browser custom track) |
| Alignm length: | 646 |
| Alignm identity: | 368 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 320, 311 |
| Conread position: | 495-1176 |
| Cow position: | chr19:23613418-23614099 (view UCSC Genome Browser custom track) |
| Alignm length: | 684 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 176 |
| Conread position: | 495-1178 |
| Cow position: | chr19:14959665-14958999 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 412 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 165, 17 |
| Conread position: | 499-1183 |
| Cow position: | chr19:23614430-23615115 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 163, 181 |
| Conread position: | 503-1178 |
| Cow position: | chr19:23597024-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 681 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 58, 21 |
| Conread position: | 506-1156 |
| Cow position: | chr19:20677948-20678598 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 382 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 64, 95 |
| Conread position: | 509-1131 |
| Cow position: | chr19:23613348-23613970 (view UCSC Genome Browser custom track) |
| Alignm length: | 625 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 48 |
| Conread position: | 515-1103 |
| Cow position: | chr19:20635627-20635039 (view UCSC Genome Browser custom track) |
| Alignm length: | 594 |
| Alignm identity: | 351 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 162, 172 |
| Conread position: | 515-1137 |
| Cow position: | chr19:23613858-23614480 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 394 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 156, 150 |
| Conread position: | 515-1140 |
| Cow position: | chr19:20678125-20678748 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 384 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 167, 159 |
| Conread position: | 515-1177 |
| Cow position: | chr19:14960385-14959725 (view UCSC Genome Browser custom track) |
| Alignm length: | 668 |
| Alignm identity: | 406 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 515-1187 |
| Cow position: | chr19:23649392-23650064 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 167 |
| Conread position: | 520-969 |
| Cow position: | chr19:20677626-20678075 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 274 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 155, 162 |
| Conread position: | 525-964 |
| Cow position: | chr19:14948450-14948012 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 267 |
| Alignm E-value: | 4e-27 |
| Alignm gaps (pig, cow): | 137, 50 |
| Conread position: | 527-1132 |
| Cow position: | chr19:43570447-43569853 (view UCSC Genome Browser custom track) |
| Alignm length: | 611 |
| Alignm identity: | 372 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 35, 50 |
| Conread position: | 568-1119 |
| Cow position: | chr19:43570249-43569700 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 332 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 94, 101 |
| Conread position: | 581-1187 |
| Cow position: | chr19:20635645-20635039 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 354 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 96, 106 |
| Conread position: | 595-1176 |
| Cow position: | chr19:23613350-23613931 (view UCSC Genome Browser custom track) |
| Alignm length: | 584 |
| Alignm identity: | 344 |
| Alignm E-value: | 4e-36 |
| Alignm gaps (pig, cow): | 67, 76 |
| Conread position: | 595-1177 |
| Cow position: | chr19:23649304-23649886 (view UCSC Genome Browser custom track) |
| Alignm length: | 585 |
| Alignm identity: | 345 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 436, 424 |
| Conread position: | 660-1018 |
| Cow position: | chr19:14959667-14959312 (view UCSC Genome Browser custom track) |
| Alignm length: | 360 |
| Alignm identity: | 218 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 264, 11 |
| Conread position: | 671-1131 |
| Cow position: | chr19:20677527-20677985 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 279 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 56, 5 |
| Conread position: | 678-1178 |
| Cow position: | chr19:14960473-14959976 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 12, 0 |
| Conread position: | 681-1168 |
| Cow position: | chr19:14939992-14940479 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 297 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 681-1178 |
| Cow position: | chr19:43570378-43569891 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 101, 0 |
| Conread position: | 683-1179 |
| Cow position: | chr19:23649308-23649806 (view UCSC Genome Browser custom track) |
| Alignm length: | 500 |
| Alignm identity: | 307 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 397, 390 |
| Conread position: | 743-1109 |
| Cow position: | chr19:14948401-14948036 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 232 |
| Alignm E-value: | 9e-24 |
| Alignm gaps (pig, cow): | 144, 158 |
| Conread position: | 756-1178 |
| Cow position: | chr19:23613343-23613765 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 227, 204 |
| Conread position: | 762-1167 |
| Cow position: | chr19:14948463-14948061 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 253 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 386, 11 |
| Conread position: | 763-1102 |
| Cow position: | chr19:14959156-14958823 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 208 |
| Alignm E-value: | 7e-21 |
| Alignm gaps (pig, cow): | 133, 37 |
| Conread position: | 763-1176 |
| Cow position: | chr19:14939990-14940403 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 265, 256 |
| Conread position: | 845-1187 |
| Cow position: | chr19:14939988-14940330 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 213 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 77, 70 |
Show alignments to all cow chromosomes.