Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 365-1020 |
| Cow position: | chr22:11640796-11641450 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 393 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 67, 45 |
| Conread position: | 426-937 |
| Cow position: | chr22:12475801-12475291 (view UCSC Genome Browser custom track) |
| Alignm length: | 515 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 13 |
| Conread position: | 439-1168 |
| Cow position: | chr22:11640702-11641431 (view UCSC Genome Browser custom track) |
| Alignm length: | 735 |
| Alignm identity: | 425 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 216, 233 |
| Conread position: | 439-1178 |
| Cow position: | chr22:12399832-12399093 (view UCSC Genome Browser custom track) |
| Alignm length: | 743 |
| Alignm identity: | 440 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 96 |
| Conread position: | 440-1056 |
| Cow position: | chr22:12399411-12398795 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 383 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 231 |
| Conread position: | 440-1187 |
| Cow position: | chr22:12432399-12431652 (view UCSC Genome Browser custom track) |
| Alignm length: | 752 |
| Alignm identity: | 456 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 230 |
| Conread position: | 451-852 |
| Cow position: | chr22:12499566-12499967 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 36, 25 |
| Conread position: | 451-1117 |
| Cow position: | chr22:46654121-46654787 (view UCSC Genome Browser custom track) |
| Alignm length: | 673 |
| Alignm identity: | 393 |
| Alignm E-value: | 7e-33 |
| Alignm gaps (pig, cow): | 41, 29 |
| Conread position: | 451-1131 |
| Cow position: | chr22:12458584-12457904 (view UCSC Genome Browser custom track) |
| Alignm length: | 685 |
| Alignm identity: | 401 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 226, 239 |
| Conread position: | 451-1187 |
| Cow position: | chr22:12458500-12457764 (view UCSC Genome Browser custom track) |
| Alignm length: | 741 |
| Alignm identity: | 432 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 452-915 |
| Cow position: | chr22:12385389-12384926 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 191, 199 |
| Conread position: | 452-920 |
| Cow position: | chr22:12418918-12418451 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 291 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 452-937 |
| Cow position: | chr22:12499483-12499968 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 301 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 116, 104 |
| Conread position: | 452-1011 |
| Cow position: | chr22:12499399-12499958 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 336 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 452-1021 |
| Cow position: | chr22:12475860-12475291 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 348 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 31, 24 |
| Conread position: | 452-1137 |
| Cow position: | chr22:12476364-12475679 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 405 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 221, 214 |
| Conread position: | 452-1137 |
| Cow position: | chr22:12498895-12499580 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 396 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 213, 219 |
| Conread position: | 452-1141 |
| Cow position: | chr22:12432303-12431614 (view UCSC Genome Browser custom track) |
| Alignm length: | 692 |
| Alignm identity: | 399 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 225, 235 |
| Conread position: | 452-1179 |
| Cow position: | chr22:12431715-12430988 (view UCSC Genome Browser custom track) |
| Alignm length: | 731 |
| Alignm identity: | 428 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 221, 214 |
| Conread position: | 474-1139 |
| Cow position: | chr22:12399713-12399048 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 414 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 197 |
| Conread position: | 476-1021 |
| Cow position: | chr22:11701150-11701695 (view UCSC Genome Browser custom track) |
| Alignm length: | 553 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 96, 71 |
| Conread position: | 476-1187 |
| Cow position: | chr22:11640655-11641366 (view UCSC Genome Browser custom track) |
| Alignm length: | 715 |
| Alignm identity: | 409 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 186, 196 |
| Conread position: | 489-969 |
| Cow position: | chr22:14468037-14468517 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 300 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 58, 73 |
| Conread position: | 495-927 |
| Cow position: | chr22:12399188-12398756 (view UCSC Genome Browser custom track) |
| Alignm length: | 440 |
| Alignm identity: | 282 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 66, 52 |
| Conread position: | 495-1023 |
| Cow position: | chr22:12431084-12430556 (view UCSC Genome Browser custom track) |
| Alignm length: | 533 |
| Alignm identity: | 307 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 137, 155 |
| Conread position: | 495-1118 |
| Cow position: | chr22:12475901-12475279 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 385 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 495-1118 |
| Cow position: | chr22:12499358-12499980 (view UCSC Genome Browser custom track) |
| Alignm length: | 627 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 73, 63 |
| Conread position: | 495-1139 |
| Cow position: | chr22:12399440-12398796 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 192 |
| Conread position: | 495-1178 |
| Cow position: | chr22:12399608-12398925 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 418 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 176 |
| Conread position: | 498-1117 |
| Cow position: | chr22:12431333-12430714 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 377 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 401, 391 |
| Conread position: | 498-1178 |
| Cow position: | chr22:12476234-12475554 (view UCSC Genome Browser custom track) |
| Alignm length: | 687 |
| Alignm identity: | 408 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 64, 59 |
| Conread position: | 500-1115 |
| Cow position: | chr22:12385511-12384895 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 365 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 103, 182 |
| Conread position: | 505-1158 |
| Cow position: | chr22:12432084-12431429 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 402 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 10, 184 |
| Conread position: | 506-1142 |
| Cow position: | chr22:12431409-12430773 (view UCSC Genome Browser custom track) |
| Alignm length: | 644 |
| Alignm identity: | 387 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 69, 63 |
| Conread position: | 510-1181 |
| Cow position: | chr22:12399845-12399174 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 416 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 152, 170 |
| Conread position: | 514-969 |
| Cow position: | chr22:12385411-12384956 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 296 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 131, 137 |
| Conread position: | 514-1032 |
| Cow position: | chr22:12419024-12418506 (view UCSC Genome Browser custom track) |
| Alignm length: | 521 |
| Alignm identity: | 317 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 382, 375 |
| Conread position: | 515-1117 |
| Cow position: | chr22:12385664-12385060 (view UCSC Genome Browser custom track) |
| Alignm length: | 608 |
| Alignm identity: | 365 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 31, 47 |
| Conread position: | 515-1140 |
| Cow position: | chr22:14429650-14430275 (view UCSC Genome Browser custom track) |
| Alignm length: | 632 |
| Alignm identity: | 373 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 15, 19 |
| Conread position: | 515-1176 |
| Cow position: | chr22:12475965-12475304 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 150, 140 |
| Conread position: | 515-1176 |
| Cow position: | chr22:12476133-12475472 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 396 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 515-1178 |
| Cow position: | chr22:12499294-12499957 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 158, 151 |
| Conread position: | 515-1192 |
| Cow position: | chr22:12432408-12431731 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 391 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 147, 157 |
| Conread position: | 515-1192 |
| Cow position: | chr22:12499126-12499803 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 400 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 47, 32 |
| Conread position: | 516-1117 |
| Cow position: | chr22:12431568-12430966 (view UCSC Genome Browser custom track) |
| Alignm length: | 604 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 558 |
| Conread position: | 517-1187 |
| Cow position: | chr22:11640612-11641282 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 405 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 75, 81 |
| Conread position: | 519-1187 |
| Cow position: | chr22:12432152-12431484 (view UCSC Genome Browser custom track) |
| Alignm length: | 674 |
| Alignm identity: | 407 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 521-1103 |
| Cow position: | chr22:11701111-11701693 (view UCSC Genome Browser custom track) |
| Alignm length: | 587 |
| Alignm identity: | 348 |
| Alignm E-value: | 9e-35 |
| Alignm gaps (pig, cow): | 128, 136 |
| Conread position: | 521-1122 |
| Cow position: | chr22:11640868-11641468 (view UCSC Genome Browser custom track) |
| Alignm length: | 603 |
| Alignm identity: | 359 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 202, 214 |
| Conread position: | 525-1179 |
| Cow position: | chr22:12431894-12431240 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 33 |
| Conread position: | 533-1136 |
| Cow position: | chr22:12498892-12499496 (view UCSC Genome Browser custom track) |
| Alignm length: | 609 |
| Alignm identity: | 381 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 92, 82 |
| Conread position: | 561-1116 |
| Cow position: | chr22:12476339-12475784 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 353 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 564-1187 |
| Cow position: | chr22:14442013-14442633 (view UCSC Genome Browser custom track) |
| Alignm length: | 629 |
| Alignm identity: | 359 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 108, 102 |
| Conread position: | 573-1139 |
| Cow position: | chr22:46654075-46654641 (view UCSC Genome Browser custom track) |
| Alignm length: | 574 |
| Alignm identity: | 341 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 70, 78 |
| Conread position: | 576-1168 |
| Cow position: | chr22:12458627-12458035 (view UCSC Genome Browser custom track) |
| Alignm length: | 598 |
| Alignm identity: | 386 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 70, 65 |
| Conread position: | 604-1128 |
| Cow position: | chr22:12419018-12418494 (view UCSC Genome Browser custom track) |
| Alignm length: | 528 |
| Alignm identity: | 314 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 80, 62 |
| Conread position: | 626-1187 |
| Cow position: | chr22:12419078-12418519 (view UCSC Genome Browser custom track) |
| Alignm length: | 563 |
| Alignm identity: | 303 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 84, 62 |
| Conread position: | 677-1137 |
| Cow position: | chr22:12399846-12399386 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 281 |
| Alignm E-value: | 8e-34 |
| Alignm gaps (pig, cow): | 106, 110 |
| Conread position: | 678-1222 |
| Cow position: | chr22:12385669-12385119 (view UCSC Genome Browser custom track) |
| Alignm length: | 552 |
| Alignm identity: | 323 |
| Alignm E-value: | 5e-29 |
| Alignm gaps (pig, cow): | 238, 526 |
| Conread position: | 680-1177 |
| Cow position: | chr22:12432495-12431998 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 301 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 244, 236 |
| Conread position: | 683-1138 |
| Cow position: | chr22:12432408-12431953 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 254, 235 |
| Conread position: | 701-1178 |
| Cow position: | chr22:12458586-12458109 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 748-1181 |
| Cow position: | chr22:12458623-12458190 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 270 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 177, 170 |
| Conread position: | 773-1026 |
| Cow position: | chr22:12544591-12544845 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 164 |
| Alignm E-value: | 7e-22 |
| Alignm gaps (pig, cow): | 216, 203 |
| Conread position: | 785-1174 |
| Cow position: | chr22:12476367-12475979 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 245 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 102, 121 |
| Conread position: | 785-1178 |
| Cow position: | chr22:12498892-12499285 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 252 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 103, 121 |
| Conread position: | 826-1187 |
| Cow position: | chr22:12498849-12499210 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 220 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 99, 92 |
Show alignments to all cow chromosomes.