Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 361-1101 |
| Cow position: | chr23:24560872-24560132 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 451 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 83 |
| Conread position: | 371-937 |
| Cow position: | chr23:24536018-24535451 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 331 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 6, 71 |
| Conread position: | 439-1011 |
| Cow position: | chr23:25660163-25660735 (view UCSC Genome Browser custom track) |
| Alignm length: | 575 |
| Alignm identity: | 349 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 197, 209 |
| Conread position: | 439-1187 |
| Cow position: | chr23:25626126-25626871 (view UCSC Genome Browser custom track) |
| Alignm length: | 755 |
| Alignm identity: | 444 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 129, 112 |
| Conread position: | 451-853 |
| Cow position: | chr23:24560530-24560128 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 248 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 211, 229 |
| Conread position: | 451-864 |
| Cow position: | chr23:24626332-24626743 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 451-885 |
| Cow position: | chr23:25698548-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 259 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 111, 106 |
| Conread position: | 451-1054 |
| Cow position: | chr23:24639492-24640094 (view UCSC Genome Browser custom track) |
| Alignm length: | 607 |
| Alignm identity: | 363 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 452-835 |
| Cow position: | chr23:24522543-24522160 (view UCSC Genome Browser custom track) |
| Alignm length: | 386 |
| Alignm identity: | 236 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 193, 188 |
| Conread position: | 452-1008 |
| Cow position: | chr23:24547221-24546665 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 342 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 110, 95 |
| Conread position: | 452-1008 |
| Cow position: | chr23:25698631-25698075 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 328 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 177, 201 |
| Conread position: | 452-1022 |
| Cow position: | chr23:24536020-24535450 (view UCSC Genome Browser custom track) |
| Alignm length: | 572 |
| Alignm identity: | 331 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 235, 214 |
| Conread position: | 452-1137 |
| Cow position: | chr23:24639325-24640010 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 400 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 225, 235 |
| Conread position: | 472-1096 |
| Cow position: | chr23:24547285-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 628 |
| Alignm identity: | 369 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 104, 83 |
| Conread position: | 472-1179 |
| Cow position: | chr23:24560845-24560138 (view UCSC Genome Browser custom track) |
| Alignm length: | 711 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 90, 85 |
| Conread position: | 473-974 |
| Cow position: | chr23:24522687-24522189 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 296 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 115, 85 |
| Conread position: | 487-1187 |
| Cow position: | chr23:24560914-24560214 (view UCSC Genome Browser custom track) |
| Alignm length: | 703 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 189, 203 |
| Conread position: | 490-936 |
| Cow position: | chr23:25626594-25627038 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 274 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 172, 188 |
| Conread position: | 493-1168 |
| Cow position: | chr23:24547347-24546673 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 52, 14 |
| Conread position: | 495-1231 |
| Cow position: | chr23:25626014-25626751 (view UCSC Genome Browser custom track) |
| Alignm length: | 747 |
| Alignm identity: | 444 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 182, 195 |
| Conread position: | 499-1181 |
| Cow position: | chr23:25626354-25627033 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 54 |
| Conread position: | 501-1168 |
| Cow position: | chr23:24522825-24522163 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 397 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 172, 38 |
| Conread position: | 505-1032 |
| Cow position: | chr23:24536051-24535524 (view UCSC Genome Browser custom track) |
| Alignm length: | 529 |
| Alignm identity: | 313 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 155, 149 |
| Conread position: | 514-1109 |
| Cow position: | chr23:24639471-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 601 |
| Alignm identity: | 369 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 43 |
| Conread position: | 517-1057 |
| Cow position: | chr23:25660157-25660697 (view UCSC Genome Browser custom track) |
| Alignm length: | 545 |
| Alignm identity: | 332 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 160, 173 |
| Conread position: | 521-1137 |
| Cow position: | chr23:25626124-25626737 (view UCSC Genome Browser custom track) |
| Alignm length: | 620 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 141, 150 |
| Conread position: | 533-926 |
| Cow position: | chr23:24626330-24626723 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 29, 24 |
| Conread position: | 533-1179 |
| Cow position: | chr23:24639238-24639884 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 129, 139 |
| Conread position: | 561-1008 |
| Cow position: | chr23:24626274-24626721 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 286 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 18, 49 |
| Conread position: | 574-1052 |
| Cow position: | chr23:24522670-24522194 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 306 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 47, 41 |
| Conread position: | 581-930 |
| Cow position: | chr23:25724057-25723708 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 50, 45 |
| Conread position: | 585-1178 |
| Cow position: | chr23:24522825-24522237 (view UCSC Genome Browser custom track) |
| Alignm length: | 597 |
| Alignm identity: | 348 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 77, 32 |
| Conread position: | 609-1136 |
| Cow position: | chr23:25698642-25698114 (view UCSC Genome Browser custom track) |
| Alignm length: | 535 |
| Alignm identity: | 329 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 43, 28 |
| Conread position: | 611-1008 |
| Cow position: | chr23:25724111-25723714 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 241 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 62, 55 |
| Conread position: | 619-1187 |
| Cow position: | chr23:24639240-24639808 (view UCSC Genome Browser custom track) |
| Alignm length: | 571 |
| Alignm identity: | 335 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 54, 47 |
| Conread position: | 639-1110 |
| Cow position: | chr23:25625990-25626461 (view UCSC Genome Browser custom track) |
| Alignm length: | 474 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 47 |
| Conread position: | 670-1117 |
| Cow position: | chr23:24626301-24626744 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 281 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 381, 9 |
| Conread position: | 671-1137 |
| Cow position: | chr23:24639460-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 469 |
| Alignm identity: | 296 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 6, 16 |
| Conread position: | 671-1192 |
| Cow position: | chr23:24535967-24535448 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 308 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 75, 7 |
| Conread position: | 676-1176 |
| Cow position: | chr23:24547335-24546833 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 313 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 7, 48 |
| Conread position: | 678-1117 |
| Cow position: | chr23:25698656-25698218 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 271 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 32, 12 |
| Conread position: | 682-1195 |
| Cow position: | chr23:24536042-24535528 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 324 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 301, 294 |
| Conread position: | 689-1011 |
| Cow position: | chr23:24654043-24654365 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 259, 227 |
| Conread position: | 692-1178 |
| Cow position: | chr23:25660164-25660650 (view UCSC Genome Browser custom track) |
| Alignm length: | 494 |
| Alignm identity: | 314 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 18, 30 |
| Conread position: | 695-1093 |
| Cow position: | chr23:25724111-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 244 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 286, 292 |
| Conread position: | 740-1170 |
| Cow position: | chr23:25626007-25626437 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 254 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 184, 174 |
| Conread position: | 748-1226 |
| Cow position: | chr23:24639201-24639683 (view UCSC Genome Browser custom track) |
| Alignm length: | 485 |
| Alignm identity: | 299 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 159, 163 |
| Conread position: | 761-1118 |
| Cow position: | chr23:24654032-24654388 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 223 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 163, 7 |
| Conread position: | 762-1181 |
| Cow position: | chr23:24547331-24546912 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 279 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 145, 150 |
| Conread position: | 766-1183 |
| Cow position: | chr23:24626312-24626727 (view UCSC Genome Browser custom track) |
| Alignm length: | 419 |
| Alignm identity: | 271 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 386, 8 |
| Conread position: | 785-1139 |
| Cow position: | chr23:25724105-25723751 (view UCSC Genome Browser custom track) |
| Alignm length: | 356 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 139, 133 |
| Conread position: | 804-1139 |
| Cow position: | chr23:25698699-25698364 (view UCSC Genome Browser custom track) |
| Alignm length: | 338 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 292, 300 |
| Conread position: | 807-1178 |
| Cow position: | chr23:24626268-24626639 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 24, 29 |
| Conread position: | 916-1179 |
| Cow position: | chr23:25660139-25660401 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 251, 7 |
Show alignments to all cow chromosomes.