Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 178-1283 |
| Cow position: | chr25:34713532-34714637 (view UCSC Genome Browser custom track) |
| Alignm length: | 1107 |
| Alignm identity: | 900 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 229, 239 |
| Conread position: | 361-1032 |
| Cow position: | chr25:33157456-33156786 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 30 |
| Conread position: | 361-1044 |
| Cow position: | chr25:34447123-34447799 (view UCSC Genome Browser custom track) |
| Alignm length: | 686 |
| Alignm identity: | 402 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 73, 65 |
| Conread position: | 364-890 |
| Cow position: | chr25:23420319-23420845 (view UCSC Genome Browser custom track) |
| Alignm length: | 530 |
| Alignm identity: | 323 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 68, 45 |
| Conread position: | 364-1181 |
| Cow position: | chr25:33298751-33299568 (view UCSC Genome Browser custom track) |
| Alignm length: | 822 |
| Alignm identity: | 476 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 68, 61 |
| Conread position: | 395-1178 |
| Cow position: | chr25:25652407-25653190 (view UCSC Genome Browser custom track) |
| Alignm length: | 788 |
| Alignm identity: | 439 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 167, 162 |
| Conread position: | 412-934 |
| Cow position: | chr25:33127702-33128224 (view UCSC Genome Browser custom track) |
| Alignm length: | 525 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 461, 454 |
| Conread position: | 447-1007 |
| Cow position: | chr25:33299338-33299891 (view UCSC Genome Browser custom track) |
| Alignm length: | 562 |
| Alignm identity: | 338 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 230, 243 |
| Conread position: | 448-1177 |
| Cow position: | chr25:25652292-25653021 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 407 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 539, 531 |
| Conread position: | 451-939 |
| Cow position: | chr25:34769681-34769193 (view UCSC Genome Browser custom track) |
| Alignm length: | 493 |
| Alignm identity: | 298 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 117, 96 |
| Conread position: | 451-1183 |
| Cow position: | chr25:36801242-36801963 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 434 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 292, 105 |
| Conread position: | 452-1057 |
| Cow position: | chr25:34769848-34769243 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 370 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 39, 27 |
| Conread position: | 452-1119 |
| Cow position: | chr25:34447046-34447714 (view UCSC Genome Browser custom track) |
| Alignm length: | 675 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 105 |
| Conread position: | 452-1131 |
| Cow position: | chr25:33298923-33299602 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 402 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 217, 210 |
| Conread position: | 487-1187 |
| Cow position: | chr25:33157581-33156882 (view UCSC Genome Browser custom track) |
| Alignm length: | 707 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 50, 5 |
| Conread position: | 490-1103 |
| Cow position: | chr25:33157411-33156798 (view UCSC Genome Browser custom track) |
| Alignm length: | 617 |
| Alignm identity: | 392 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 155, 148 |
| Conread position: | 490-1176 |
| Cow position: | chr25:34447000-34447686 (view UCSC Genome Browser custom track) |
| Alignm length: | 695 |
| Alignm identity: | 430 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 82, 76 |
| Conread position: | 495-1133 |
| Cow position: | chr25:33298630-33299268 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 398 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 182, 187 |
| Conread position: | 495-1178 |
| Cow position: | chr25:34770057-34769374 (view UCSC Genome Browser custom track) |
| Alignm length: | 688 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 167, 185 |
| Conread position: | 498-1052 |
| Cow position: | chr25:33299305-33299855 (view UCSC Genome Browser custom track) |
| Alignm length: | 559 |
| Alignm identity: | 333 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 164, 173 |
| Conread position: | 502-1116 |
| Cow position: | chr25:36800705-36801319 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 382 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 94, 83 |
| Conread position: | 515-936 |
| Cow position: | chr25:36801546-36801967 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 157, 147 |
| Conread position: | 515-1048 |
| Cow position: | chr25:36800802-36801335 (view UCSC Genome Browser custom track) |
| Alignm length: | 537 |
| Alignm identity: | 323 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 162, 172 |
| Conread position: | 515-1133 |
| Cow position: | chr25:33298482-33299100 (view UCSC Genome Browser custom track) |
| Alignm length: | 624 |
| Alignm identity: | 379 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 162, 172 |
| Conread position: | 515-1179 |
| Cow position: | chr25:34446941-34447605 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 421 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 515-1186 |
| Cow position: | chr25:33298566-33299240 (view UCSC Genome Browser custom track) |
| Alignm length: | 678 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 396 |
| Conread position: | 519-1136 |
| Cow position: | chr25:34447197-34447807 (view UCSC Genome Browser custom track) |
| Alignm length: | 621 |
| Alignm identity: | 380 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 152 |
| Conread position: | 521-1131 |
| Cow position: | chr25:33299076-33299686 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 370 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 162, 145 |
| Conread position: | 521-1131 |
| Cow position: | chr25:33299160-33299770 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 371 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 150, 144 |
| Conread position: | 521-1178 |
| Cow position: | chr25:25652449-25653106 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 124, 116 |
| Conread position: | 524-1186 |
| Cow position: | chr25:36800643-36801308 (view UCSC Genome Browser custom track) |
| Alignm length: | 667 |
| Alignm identity: | 403 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 138, 145 |
| Conread position: | 529-1056 |
| Cow position: | chr25:23420316-23420843 (view UCSC Genome Browser custom track) |
| Alignm length: | 532 |
| Alignm identity: | 324 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 123, 114 |
| Conread position: | 533-1178 |
| Cow position: | chr25:326434-327085 (view UCSC Genome Browser custom track) |
| Alignm length: | 658 |
| Alignm identity: | 383 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 363, 349 |
| Conread position: | 536-885 |
| Cow position: | chr25:33145038-33145387 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 100, 107 |
| Conread position: | 561-1139 |
| Cow position: | chr25:33157424-33156846 (view UCSC Genome Browser custom track) |
| Alignm length: | 579 |
| Alignm identity: | 358 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 574-1105 |
| Cow position: | chr25:33144911-33145439 (view UCSC Genome Browser custom track) |
| Alignm length: | 534 |
| Alignm identity: | 320 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 98, 91 |
| Conread position: | 597-926 |
| Cow position: | chr25:326924-327253 (view UCSC Genome Browser custom track) |
| Alignm length: | 334 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 602-1053 |
| Cow position: | chr25:22235754-22236202 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 271 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 48, 37 |
| Conread position: | 602-1137 |
| Cow position: | chr25:36800637-36801172 (view UCSC Genome Browser custom track) |
| Alignm length: | 541 |
| Alignm identity: | 320 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 75, 85 |
| Conread position: | 619-1103 |
| Cow position: | chr25:23420322-23420806 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 61 |
| Conread position: | 619-1114 |
| Cow position: | chr25:33127741-33128235 (view UCSC Genome Browser custom track) |
| Alignm length: | 498 |
| Alignm identity: | 304 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 58, 67 |
| Conread position: | 620-1117 |
| Cow position: | chr25:33144873-33145367 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 304, 164 |
| Conread position: | 620-1134 |
| Cow position: | chr25:33305940-33305431 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 322 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 42, 51 |
| Conread position: | 624-1187 |
| Cow position: | chr25:34770097-34769533 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 348 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 7, 67 |
| Conread position: | 655-1054 |
| Cow position: | chr25:34732633-34732233 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 16, 36 |
| Conread position: | 672-1187 |
| Cow position: | chr25:34770132-34769617 (view UCSC Genome Browser custom track) |
| Alignm length: | 518 |
| Alignm identity: | 321 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 313, 288 |
| Conread position: | 683-1128 |
| Cow position: | chr25:34763249-34763691 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 203, 0 |
| Conread position: | 683-1168 |
| Cow position: | chr25:25652191-25652676 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 397, 390 |
| Conread position: | 683-1177 |
| Cow position: | chr25:25652359-25652853 (view UCSC Genome Browser custom track) |
| Alignm length: | 496 |
| Alignm identity: | 294 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 397, 390 |
| Conread position: | 683-1184 |
| Cow position: | chr25:33127721-33128225 (view UCSC Genome Browser custom track) |
| Alignm length: | 505 |
| Alignm identity: | 308 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 483, 0 |
| Conread position: | 683-1192 |
| Cow position: | chr25:33305399-33304895 (view UCSC Genome Browser custom track) |
| Alignm length: | 513 |
| Alignm identity: | 311 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 356, 78 |
| Conread position: | 683-1195 |
| Cow position: | chr25:36800634-36801147 (view UCSC Genome Browser custom track) |
| Alignm length: | 516 |
| Alignm identity: | 299 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 330, 340 |
| Conread position: | 689-887 |
| Cow position: | chr25:34433029-34433227 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 701-1161 |
| Cow position: | chr25:23420320-23420781 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 287 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 206, 211 |
| Conread position: | 701-1167 |
| Cow position: | chr25:33144870-33145333 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 283 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 172, 143 |
| Conread position: | 701-1178 |
| Cow position: | chr25:25652293-25652770 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 289 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 233, 227 |
| Conread position: | 746-1178 |
| Cow position: | chr25:33127701-33128132 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 752-1139 |
| Cow position: | chr25:34433512-34433896 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 146, 93 |
| Conread position: | 754-1176 |
| Cow position: | chr25:33298469-33298891 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 260 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 97, 90 |
| Conread position: | 758-1187 |
| Cow position: | chr25:34732614-34732185 (view UCSC Genome Browser custom track) |
| Alignm length: | 434 |
| Alignm identity: | 263 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 149, 155 |
| Conread position: | 761-1187 |
| Cow position: | chr25:22235826-22236252 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 55, 46 |
| Conread position: | 762-1017 |
| Cow position: | chr25:427329-427582 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 164 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 42, 7 |
| Conread position: | 763-1168 |
| Cow position: | chr25:346447-346852 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 248 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 136, 158 |
| Conread position: | 764-1178 |
| Cow position: | chr25:25652188-25652602 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 316, 309 |
| Conread position: | 769-1181 |
| Cow position: | chr25:36800636-36801048 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 261 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 159, 147 |
| Conread position: | 776-1181 |
| Cow position: | chr25:23420311-23420716 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 246 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 376, 386 |
| Conread position: | 844-1177 |
| Cow position: | chr25:34446934-34447267 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 236, 229 |
| Conread position: | 930-1214 |
| Cow position: | chr25:34446936-34447224 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 250, 256 |
Show alignments to all cow chromosomes.