Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 361-1138 |
| Cow position: | chr7:42879175-42878398 (view UCSC Genome Browser custom track) |
| Alignm length: | 784 |
| Alignm identity: | 483 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 57 |
| Conread position: | 427-885 |
| Cow position: | chr7:1015023-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 219, 13 |
| Conread position: | 439-885 |
| Cow position: | chr7:3180380-3180824 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 267 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 226, 232 |
| Conread position: | 447-1131 |
| Cow position: | chr7:1014706-1015390 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 415 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 165, 158 |
| Conread position: | 451-929 |
| Cow position: | chr7:42878749-42878271 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 290 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 27, 18 |
| Conread position: | 451-1057 |
| Cow position: | chr7:3180140-3180746 (view UCSC Genome Browser custom track) |
| Alignm length: | 610 |
| Alignm identity: | 368 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 211, 220 |
| Conread position: | 451-1137 |
| Cow position: | chr7:11601164-11600478 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 406 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 214, 220 |
| Conread position: | 451-1181 |
| Cow position: | chr7:1014464-1015188 (view UCSC Genome Browser custom track) |
| Alignm length: | 736 |
| Alignm identity: | 432 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 111, 101 |
| Conread position: | 451-1187 |
| Cow position: | chr7:8277703-8278439 (view UCSC Genome Browser custom track) |
| Alignm length: | 745 |
| Alignm identity: | 430 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 35, 18 |
| Conread position: | 452-907 |
| Cow position: | chr7:18390354-18390810 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 277 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 446, 0 |
| Conread position: | 452-969 |
| Cow position: | chr7:18390270-18390787 (view UCSC Genome Browser custom track) |
| Alignm length: | 519 |
| Alignm identity: | 307 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 213, 220 |
| Conread position: | 452-1018 |
| Cow position: | chr7:3180309-3180874 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 340 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 225, 235 |
| Conread position: | 452-1131 |
| Cow position: | chr7:42879252-42878573 (view UCSC Genome Browser custom track) |
| Alignm length: | 682 |
| Alignm identity: | 410 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 452-1138 |
| Cow position: | chr7:1439578-1440264 (view UCSC Genome Browser custom track) |
| Alignm length: | 696 |
| Alignm identity: | 409 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 452-1139 |
| Cow position: | chr7:3179973-3180660 (view UCSC Genome Browser custom track) |
| Alignm length: | 691 |
| Alignm identity: | 401 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 217, 211 |
| Conread position: | 452-1140 |
| Cow position: | chr7:42879000-42878312 (view UCSC Genome Browser custom track) |
| Alignm length: | 690 |
| Alignm identity: | 417 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 278, 270 |
| Conread position: | 452-1200 |
| Cow position: | chr7:8325009-8325753 (view UCSC Genome Browser custom track) |
| Alignm length: | 763 |
| Alignm identity: | 452 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 32, 17 |
| Conread position: | 482-1143 |
| Cow position: | chr7:8325123-8325784 (view UCSC Genome Browser custom track) |
| Alignm length: | 672 |
| Alignm identity: | 398 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 176, 155 |
| Conread position: | 491-1010 |
| Cow position: | chr7:42878793-42878274 (view UCSC Genome Browser custom track) |
| Alignm length: | 523 |
| Alignm identity: | 310 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 171, 189 |
| Conread position: | 491-1178 |
| Cow position: | chr7:3179676-3180363 (view UCSC Genome Browser custom track) |
| Alignm length: | 693 |
| Alignm identity: | 425 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 28, 20 |
| Conread position: | 495-969 |
| Cow position: | chr7:1015006-1015482 (view UCSC Genome Browser custom track) |
| Alignm length: | 480 |
| Alignm identity: | 294 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 73, 61 |
| Conread position: | 498-1054 |
| Cow position: | chr7:1014841-1015396 (view UCSC Genome Browser custom track) |
| Alignm length: | 558 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 189 |
| Conread position: | 498-1148 |
| Cow position: | chr7:8325391-8326041 (view UCSC Genome Browser custom track) |
| Alignm length: | 660 |
| Alignm identity: | 382 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 152, 163 |
| Conread position: | 498-1176 |
| Cow position: | chr7:3180103-3180781 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 411 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 54, 76 |
| Conread position: | 506-890 |
| Cow position: | chr7:1439885-1440268 (view UCSC Genome Browser custom track) |
| Alignm length: | 388 |
| Alignm identity: | 243 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 156, 86 |
| Conread position: | 514-1156 |
| Cow position: | chr7:8325323-8325965 (view UCSC Genome Browser custom track) |
| Alignm length: | 651 |
| Alignm identity: | 390 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 44, 61 |
| Conread position: | 515-860 |
| Cow position: | chr7:42878601-42878256 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 218 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 162, 172 |
| Conread position: | 515-1056 |
| Cow position: | chr7:18390165-18390706 (view UCSC Genome Browser custom track) |
| Alignm length: | 544 |
| Alignm identity: | 334 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 61, 43 |
| Conread position: | 519-1150 |
| Cow position: | chr7:3179872-3180503 (view UCSC Genome Browser custom track) |
| Alignm length: | 636 |
| Alignm identity: | 387 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 49, 32 |
| Conread position: | 521-1107 |
| Cow position: | chr7:8278025-8278609 (view UCSC Genome Browser custom track) |
| Alignm length: | 591 |
| Alignm identity: | 342 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 129, 140 |
| Conread position: | 521-1136 |
| Cow position: | chr7:8243395-8244009 (view UCSC Genome Browser custom track) |
| Alignm length: | 622 |
| Alignm identity: | 360 |
| Alignm E-value: | 1e-25 |
| Alignm gaps (pig, cow): | 118, 159 |
| Conread position: | 525-1176 |
| Cow position: | chr7:3179962-3180613 (view UCSC Genome Browser custom track) |
| Alignm length: | 657 |
| Alignm identity: | 394 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 137, 146 |
| Conread position: | 535-1117 |
| Cow position: | chr7:42879253-42878671 (view UCSC Genome Browser custom track) |
| Alignm length: | 586 |
| Alignm identity: | 373 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 127, 136 |
| Conread position: | 542-1178 |
| Cow position: | chr7:11601157-11600521 (view UCSC Genome Browser custom track) |
| Alignm length: | 641 |
| Alignm identity: | 379 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 103, 96 |
| Conread position: | 563-1138 |
| Cow position: | chr7:1014654-1015229 (view UCSC Genome Browser custom track) |
| Alignm length: | 580 |
| Alignm identity: | 360 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 102, 108 |
| Conread position: | 567-1176 |
| Cow position: | chr7:1014412-1015015 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 356 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 110, 123 |
| Conread position: | 574-1066 |
| Cow position: | chr7:1439786-1440276 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 294 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 338, 76 |
| Conread position: | 575-1020 |
| Cow position: | chr7:1015002-1015447 (view UCSC Genome Browser custom track) |
| Alignm length: | 449 |
| Alignm identity: | 271 |
| Alignm E-value: | 7e-29 |
| Alignm gaps (pig, cow): | 87, 105 |
| Conread position: | 575-1139 |
| Cow position: | chr7:1014750-1015314 (view UCSC Genome Browser custom track) |
| Alignm length: | 569 |
| Alignm identity: | 344 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 80, 96 |
| Conread position: | 596-1178 |
| Cow position: | chr7:18390162-18390744 (view UCSC Genome Browser custom track) |
| Alignm length: | 590 |
| Alignm identity: | 358 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 66, 76 |
| Conread position: | 660-1138 |
| Cow position: | chr7:1014087-1014563 (view UCSC Genome Browser custom track) |
| Alignm length: | 483 |
| Alignm identity: | 285 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 24, 16 |
| Conread position: | 676-1192 |
| Cow position: | chr7:1014270-1014779 (view UCSC Genome Browser custom track) |
| Alignm length: | 520 |
| Alignm identity: | 308 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 228, 14 |
| Conread position: | 678-1148 |
| Cow position: | chr7:8324816-8325285 (view UCSC Genome Browser custom track) |
| Alignm length: | 476 |
| Alignm identity: | 287 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 55, 11 |
| Conread position: | 742-1178 |
| Cow position: | chr7:18390140-18390576 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 749-1141 |
| Cow position: | chr7:8243204-8243596 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 234 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 228, 176 |
| Conread position: | 763-1054 |
| Cow position: | chr7:1014272-1014563 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 182 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.