Cow genome map
| Conread name: | Ss1.1-Mus1-POSM0100011_B06F.5 |
| Conread position: | 440-886 |
| Cow position: | chr8:46816897-46817343 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 277 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 225, 231 |
| Conread position: | 440-1011 |
| Cow position: | chr8:45201366-45201937 (view UCSC Genome Browser custom track) |
| Alignm length: | 576 |
| Alignm identity: | 346 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 124, 134 |
| Conread position: | 440-1016 |
| Cow position: | chr8:48406862-48406286 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 348 |
| Alignm E-value: | 9e-33 |
| Alignm gaps (pig, cow): | 101, 130 |
| Conread position: | 440-1178 |
| Cow position: | chr8:45201114-45201852 (view UCSC Genome Browser custom track) |
| Alignm length: | 744 |
| Alignm identity: | 452 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 135, 106 |
| Conread position: | 441-1187 |
| Cow position: | chr8:46816562-46817308 (view UCSC Genome Browser custom track) |
| Alignm length: | 751 |
| Alignm identity: | 465 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 236, 249 |
| Conread position: | 451-1181 |
| Cow position: | chr8:46816068-46816798 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 446 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 701, 713 |
| Conread position: | 452-1017 |
| Cow position: | chr8:46816825-46817390 (view UCSC Genome Browser custom track) |
| Alignm length: | 570 |
| Alignm identity: | 344 |
| Alignm E-value: | 6e-39 |
| Alignm gaps (pig, cow): | 210, 219 |
| Conread position: | 452-1103 |
| Cow position: | chr8:48407438-48406787 (view UCSC Genome Browser custom track) |
| Alignm length: | 656 |
| Alignm identity: | 383 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 210, 229 |
| Conread position: | 452-1137 |
| Cow position: | chr8:46816153-46816838 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 427 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 18 |
| Conread position: | 452-1137 |
| Cow position: | chr8:55580846-55581531 (view UCSC Genome Browser custom track) |
| Alignm length: | 689 |
| Alignm identity: | 409 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 116, 99 |
| Conread position: | 452-1166 |
| Cow position: | chr8:55580930-55581644 (view UCSC Genome Browser custom track) |
| Alignm length: | 719 |
| Alignm identity: | 426 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 109, 94 |
| Conread position: | 452-1168 |
| Cow position: | chr8:45201210-45201926 (view UCSC Genome Browser custom track) |
| Alignm length: | 722 |
| Alignm identity: | 434 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 33 |
| Conread position: | 452-1168 |
| Cow position: | chr8:48407018-48406302 (view UCSC Genome Browser custom track) |
| Alignm length: | 726 |
| Alignm identity: | 436 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 193, 187 |
| Conread position: | 452-1181 |
| Cow position: | chr8:45201042-45201771 (view UCSC Genome Browser custom track) |
| Alignm length: | 732 |
| Alignm identity: | 441 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 113, 123 |
| Conread position: | 484-1137 |
| Cow position: | chr8:45200821-45201476 (view UCSC Genome Browser custom track) |
| Alignm length: | 659 |
| Alignm identity: | 380 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 7, 168 |
| Conread position: | 490-1053 |
| Cow position: | chr8:55581136-55581699 (view UCSC Genome Browser custom track) |
| Alignm length: | 568 |
| Alignm identity: | 347 |
| Alignm E-value: | 8.99634e-43 |
| Alignm gaps (pig, cow): | 71, 66 |
| Conread position: | 490-1131 |
| Cow position: | chr8:46816275-46816916 (view UCSC Genome Browser custom track) |
| Alignm length: | 647 |
| Alignm identity: | 390 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 72, 66 |
| Conread position: | 495-1137 |
| Cow position: | chr8:48407311-48406669 (view UCSC Genome Browser custom track) |
| Alignm length: | 648 |
| Alignm identity: | 387 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 156, 144 |
| Conread position: | 495-1151 |
| Cow position: | chr8:46816700-46817358 (view UCSC Genome Browser custom track) |
| Alignm length: | 665 |
| Alignm identity: | 402 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 141, 174 |
| Conread position: | 498-1177 |
| Cow position: | chr8:55581060-55581739 (view UCSC Genome Browser custom track) |
| Alignm length: | 683 |
| Alignm identity: | 395 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 70, 57 |
| Conread position: | 514-1181 |
| Cow position: | chr8:46815963-46816630 (view UCSC Genome Browser custom track) |
| Alignm length: | 671 |
| Alignm identity: | 395 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 148, 157 |
| Conread position: | 515-1110 |
| Cow position: | chr8:48407543-48406948 (view UCSC Genome Browser custom track) |
| Alignm length: | 602 |
| Alignm identity: | 363 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 27, 38 |
| Conread position: | 515-1140 |
| Cow position: | chr8:46816468-46817093 (view UCSC Genome Browser custom track) |
| Alignm length: | 631 |
| Alignm identity: | 384 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 148, 156 |
| Conread position: | 515-1181 |
| Cow position: | chr8:48407627-48406961 (view UCSC Genome Browser custom track) |
| Alignm length: | 669 |
| Alignm identity: | 396 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 147, 156 |
| Conread position: | 525-1136 |
| Cow position: | chr8:55580835-55581447 (view UCSC Genome Browser custom track) |
| Alignm length: | 615 |
| Alignm identity: | 372 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 51, 27 |
| Conread position: | 526-1137 |
| Cow position: | chr8:46816395-46817007 (view UCSC Genome Browser custom track) |
| Alignm length: | 618 |
| Alignm identity: | 379 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 29 |
| Conread position: | 533-1187 |
| Cow position: | chr8:46815652-46816300 (view UCSC Genome Browser custom track) |
| Alignm length: | 662 |
| Alignm identity: | 390 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 183, 139 |
| Conread position: | 574-1187 |
| Cow position: | chr8:45201080-45201693 (view UCSC Genome Browser custom track) |
| Alignm length: | 616 |
| Alignm identity: | 371 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 88, 97 |
| Conread position: | 575-1187 |
| Cow position: | chr8:45200829-45201441 (view UCSC Genome Browser custom track) |
| Alignm length: | 614 |
| Alignm identity: | 361 |
| Alignm E-value: | 6e-40 |
| Alignm gaps (pig, cow): | 207, 212 |
| Conread position: | 611-1139 |
| Cow position: | chr8:55580837-55581365 (view UCSC Genome Browser custom track) |
| Alignm length: | 536 |
| Alignm identity: | 324 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 51, 32 |
| Conread position: | 619-1167 |
| Cow position: | chr8:48407607-48407059 (view UCSC Genome Browser custom track) |
| Alignm length: | 551 |
| Alignm identity: | 341 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 57, 47 |
| Conread position: | 621-1139 |
| Cow position: | chr8:46815899-46816420 (view UCSC Genome Browser custom track) |
| Alignm length: | 522 |
| Alignm identity: | 317 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 34, 0 |
| Conread position: | 678-1176 |
| Cow position: | chr8:55580736-55581234 (view UCSC Genome Browser custom track) |
| Alignm length: | 501 |
| Alignm identity: | 310 |
| Alignm E-value: | 2.99878e-43 |
| Alignm gaps (pig, cow): | 218, 212 |
| Conread position: | 689-1187 |
| Cow position: | chr8:46815883-46816384 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 310 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 77, 242 |
| Conread position: | 691-1178 |
| Cow position: | chr8:55580833-55581320 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 291 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 231, 227 |
| Conread position: | 762-1207 |
| Cow position: | chr8:55580735-55581183 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 267 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 10, 154 |
| Conread position: | 776-1181 |
| Cow position: | chr8:45200778-45201183 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 240 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 126, 136 |
| Conread position: | 847-1181 |
| Cow position: | chr8:48407631-48407297 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-24 |
| Alignm gaps (pig, cow): | 101, 92 |
Show alignments to all cow chromosomes.