Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-313 |
| Cow position: | chr13:39930850-39931160 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 205 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 94, 103 |
| Conread position: | 1-391 |
| Cow position: | chr13:22125047-22125437 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 1-391 |
| Cow position: | chr13:24162773-24163163 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 240 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 51, 44 |
| Conread position: | 1-401 |
| Cow position: | chr13:22124795-22125196 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 280, 264 |
| Conread position: | 1-401 |
| Cow position: | chr13:24162521-24162922 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 258 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 94, 105 |
| Conread position: | 1-425 |
| Cow position: | chr13:22125383-22125807 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 264 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 43, 62 |
| Conread position: | 1-434 |
| Cow position: | chr13:22124963-22125394 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 272 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 135, 128 |
| Conread position: | 1-436 |
| Cow position: | chr13:24162689-24163123 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 271 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 135, 128 |
| Conread position: | 1-463 |
| Cow position: | chr13:39984018-39984477 (view UCSC Genome Browser custom track) |
| Alignm length: | 464 |
| Alignm identity: | 276 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 328, 336 |
| Conread position: | 2-340 |
| Cow position: | chr13:22125300-22125638 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 206 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-390 |
| Cow position: | chr13:39984355-39984743 (view UCSC Genome Browser custom track) |
| Alignm length: | 389 |
| Alignm identity: | 245 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-391 |
| Cow position: | chr13:24162438-24162827 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 242 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 92, 102 |
| Conread position: | 2-391 |
| Cow position: | chr13:24163026-24163415 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 233 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-403 |
| Cow position: | chr13:22124712-22125114 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 92, 102 |
| Conread position: | 2-452 |
| Cow position: | chr13:56317382-56317823 (view UCSC Genome Browser custom track) |
| Alignm length: | 455 |
| Alignm identity: | 274 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 183, 94 |
| Conread position: | 15-352 |
| Cow position: | chr13:56292150-56291812 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 219 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 289, 0 |
| Conread position: | 20-494 |
| Cow position: | chr13:56333517-56333987 (view UCSC Genome Browser custom track) |
| Alignm length: | 478 |
| Alignm identity: | 288 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 79, 72 |
| Conread position: | 24-479 |
| Cow position: | chr13:56333605-56334058 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 282 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 227, 246 |
| Conread position: | 28-435 |
| Cow position: | chr13:56333861-56334275 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 206, 374 |
| Conread position: | 29-341 |
| Cow position: | chr13:39984550-39984862 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 198 |
| Alignm E-value: | 9e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-368 |
| Cow position: | chr13:56333946-56334294 (view UCSC Genome Browser custom track) |
| Alignm length: | 350 |
| Alignm identity: | 226 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 110, 163 |
| Conread position: | 29-390 |
| Cow position: | chr13:39984466-39984827 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 228 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 243, 228 |
| Conread position: | 29-391 |
| Cow position: | chr13:39984130-39984492 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-394 |
| Cow position: | chr13:39930794-39931157 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 242 |
| Alignm E-value: | 7e-39 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 29-401 |
| Cow position: | chr13:39930710-39931083 (view UCSC Genome Browser custom track) |
| Alignm length: | 377 |
| Alignm identity: | 248 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 66, 77 |
| Conread position: | 29-424 |
| Cow position: | chr13:22125243-22125637 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 245 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 29-424 |
| Cow position: | chr13:24162969-24163363 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 247 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 28, 11 |
| Conread position: | 29-430 |
| Cow position: | chr13:39984298-39984698 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 262 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 243, 228 |
| Conread position: | 29-459 |
| Cow position: | chr13:39984214-39984643 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 267 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 366, 382 |
| Conread position: | 32-436 |
| Cow position: | chr13:39930629-39931032 (view UCSC Genome Browser custom track) |
| Alignm length: | 407 |
| Alignm identity: | 262 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 63, 74 |
| Conread position: | 33-408 |
| Cow position: | chr13:22124911-22125287 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 237 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 187, 180 |
| Conread position: | 33-408 |
| Cow position: | chr13:24162637-24163013 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 238 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 187, 180 |
| Conread position: | 38-463 |
| Cow position: | chr13:39983887-39984309 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 252 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 354, 0 |
| Conread position: | 41-451 |
| Cow position: | chr13:39983974-39984383 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 354, 370 |
| Conread position: | 48-460 |
| Cow position: | chr13:56292198-56291789 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 43, 0 |
| Conread position: | 64-442 |
| Cow position: | chr13:24163172-24163549 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 232 |
| Alignm E-value: | 6e-26 |
| Alignm gaps (pig, cow): | 32, 39 |
| Conread position: | 65-437 |
| Cow position: | chr13:22124691-22125062 (view UCSC Genome Browser custom track) |
| Alignm length: | 376 |
| Alignm identity: | 227 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 113, 133 |
| Conread position: | 65-437 |
| Cow position: | chr13:24162417-24162788 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-23 |
| Alignm gaps (pig, cow): | 184, 202 |
| Conread position: | 65-463 |
| Cow position: | chr13:56292846-56292456 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 249 |
| Alignm E-value: | 6e-27 |
| Alignm gaps (pig, cow): | 206, 71 |
| Conread position: | 70-436 |
| Cow position: | chr13:39930583-39930948 (view UCSC Genome Browser custom track) |
| Alignm length: | 369 |
| Alignm identity: | 234 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 179, 185 |
| Conread position: | 74-489 |
| Cow position: | chr13:56292332-56291930 (view UCSC Genome Browser custom track) |
| Alignm length: | 418 |
| Alignm identity: | 257 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 207, 134 |
| Conread position: | 111-341 |
| Cow position: | chr13:56317928-56318158 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 154 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 79, 68 |
Show alignments to all cow chromosomes.