Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-246 |
| Cow position: | chr17:22452008-22451763 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 29, 23 |
| Conread position: | 1-252 |
| Cow position: | chr17:22451924-22451673 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-312 |
| Cow position: | chr17:22551807-22551496 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 257, 272 |
| Conread position: | 1-378 |
| Cow position: | chr17:22499274-22498897 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 249 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 192, 197 |
| Conread position: | 1-390 |
| Cow position: | chr17:22553067-22552678 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 255 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 257, 278 |
| Conread position: | 1-424 |
| Cow position: | chr17:41441086-41440664 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 264 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 213, 220 |
| Conread position: | 1-426 |
| Cow position: | chr17:22499106-22498682 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 257 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 385, 399 |
| Conread position: | 1-427 |
| Cow position: | chr17:22473206-22473628 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 262 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 197, 57 |
| Conread position: | 1-428 |
| Cow position: | chr17:22590149-22589723 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 265 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 252, 272 |
| Conread position: | 1-436 |
| Cow position: | chr17:22552731-22552297 (view UCSC Genome Browser custom track) |
| Alignm length: | 436 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-437 |
| Cow position: | chr17:22552563-22552128 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 272 |
| Conread position: | 1-452 |
| Cow position: | chr17:41441002-41440552 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 268 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 129, 136 |
| Conread position: | 1-488 |
| Cow position: | chr17:22552059-22551574 (view UCSC Genome Browser custom track) |
| Alignm length: | 488 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 0 |
| Conread position: | 2-341 |
| Cow position: | chr17:22473456-22473795 (view UCSC Genome Browser custom track) |
| Alignm length: | 341 |
| Alignm identity: | 229 |
| Alignm E-value: | 2.8026e-45 |
| Alignm gaps (pig, cow): | 172, 178 |
| Conread position: | 2-378 |
| Cow position: | chr17:22452175-22451799 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 354, 343 |
| Conread position: | 2-393 |
| Cow position: | chr17:22551890-22551499 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 271 |
| Conread position: | 2-442 |
| Cow position: | chr17:22552226-22551787 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 271 |
| Conread position: | 2-452 |
| Cow position: | chr17:22589728-22589279 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 279 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 178, 174 |
| Conread position: | 9-488 |
| Cow position: | chr17:22590223-22589748 (view UCSC Genome Browser custom track) |
| Alignm length: | 481 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 10 |
| Conread position: | 16-426 |
| Cow position: | chr17:22499427-22499018 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 376, 0 |
| Conread position: | 19-347 |
| Cow position: | chr17:22452074-22451746 (view UCSC Genome Browser custom track) |
| Alignm length: | 330 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 253 |
| Conread position: | 19-489 |
| Cow position: | chr17:22499340-22498872 (view UCSC Genome Browser custom track) |
| Alignm length: | 473 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 329, 324 |
| Conread position: | 20-489 |
| Cow position: | chr17:22589962-22589495 (view UCSC Genome Browser custom track) |
| Alignm length: | 472 |
| Alignm identity: | 291 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 335, 321 |
| Conread position: | 24-263 |
| Cow position: | chr17:22589454-22589215 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 24-451 |
| Cow position: | chr17:22498999-22498573 (view UCSC Genome Browser custom track) |
| Alignm length: | 428 |
| Alignm identity: | 267 |
| Alignm E-value: | 7.00005e-41 |
| Alignm gaps (pig, cow): | 369, 0 |
| Conread position: | 24-489 |
| Cow position: | chr17:22473310-22473773 (view UCSC Genome Browser custom track) |
| Alignm length: | 466 |
| Alignm identity: | 291 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 368, 0 |
| Conread position: | 27-327 |
| Cow position: | chr17:22473649-22473950 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 196 |
| Alignm E-value: | 7e-31 |
| Alignm gaps (pig, cow): | 171, 166 |
| Conread position: | 28-437 |
| Cow position: | chr17:22551948-22551540 (view UCSC Genome Browser custom track) |
| Alignm length: | 412 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 230, 244 |
| Conread position: | 29-245 |
| Cow position: | chr17:22473735-22473952 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 189, 0 |
| Conread position: | 29-321 |
| Cow position: | chr17:22498826-22498534 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-372 |
| Cow position: | chr17:22498910-22498567 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 220 |
| Alignm E-value: | 4e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-390 |
| Cow position: | chr17:22452400-22452039 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 27 |
| Conread position: | 29-390 |
| Cow position: | chr17:22552115-22551754 (view UCSC Genome Browser custom track) |
| Alignm length: | 363 |
| Alignm identity: | 237 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 253, 237 |
| Conread position: | 29-437 |
| Cow position: | chr17:22590289-22589882 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 257 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-443 |
| Cow position: | chr17:22589617-22589204 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 258 |
| Alignm E-value: | 9e-34 |
| Alignm gaps (pig, cow): | 224, 244 |
| Conread position: | 29-458 |
| Cow position: | chr17:22552787-22552361 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 236 |
| Conread position: | 29-483 |
| Cow position: | chr17:22552451-22551999 (view UCSC Genome Browser custom track) |
| Alignm length: | 456 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 431, 363 |
| Conread position: | 29-488 |
| Cow position: | chr17:22552283-22551826 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 287 |
| Alignm E-value: | 8.96831e-44 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-488 |
| Cow position: | chr17:22552955-22552498 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 379 |
| Conread position: | 29-489 |
| Cow position: | chr17:22452316-22451858 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 292 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 364, 0 |
| Conread position: | 29-506 |
| Cow position: | chr17:22499162-22498689 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 296 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 154, 147 |
| Conread position: | 30-438 |
| Cow position: | chr17:22553122-22552715 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 257 |
| Alignm E-value: | 5e-38 |
| Alignm gaps (pig, cow): | 228, 243 |
| Conread position: | 33-380 |
| Cow position: | chr17:22473571-22473918 (view UCSC Genome Browser custom track) |
| Alignm length: | 348 |
| Alignm identity: | 224 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 101-372 |
| Cow position: | chr17:22452412-22452141 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-32 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 137-442 |
| Cow position: | chr17:41441118-41440814 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 250, 0 |
| Conread position: | 221-424 |
| Cow position: | chr17:41441118-41440916 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 136 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 172, 0 |
Show alignments to all cow chromosomes.