Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-300 |
| Cow position: | chr19:14960019-14959722 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 278, 206 |
| Conread position: | 1-311 |
| Cow position: | chr19:23597403-23597713 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 250, 260 |
| Conread position: | 1-378 |
| Cow position: | chr19:14948428-14948052 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 253 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 316, 26 |
| Conread position: | 1-380 |
| Cow position: | chr19:23649760-23650139 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-389 |
| Cow position: | chr19:14960185-14959801 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 262 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 32 |
| Conread position: | 1-391 |
| Cow position: | chr19:23650012-23650402 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 258 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-394 |
| Cow position: | chr19:20635511-20635118 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 249 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-412 |
| Cow position: | chr19:14940446-14940856 (view UCSC Genome Browser custom track) |
| Alignm length: | 413 |
| Alignm identity: | 275 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 281, 266 |
| Conread position: | 1-427 |
| Cow position: | chr19:23597235-23597660 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-451 |
| Cow position: | chr19:23596902-23597348 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 283 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 131, 0 |
| Conread position: | 1-452 |
| Cow position: | chr19:14960269-14959821 (view UCSC Genome Browser custom track) |
| Alignm length: | 453 |
| Alignm identity: | 300 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 389, 116 |
| Conread position: | 1-459 |
| Cow position: | chr19:14940194-14940651 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 449, 391 |
| Conread position: | 1-459 |
| Cow position: | chr19:23597151-23597608 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 296 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-489 |
| Cow position: | chr19:14940026-14940512 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 336 |
| Conread position: | 1-505 |
| Cow position: | chr19:23614478-23614979 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 326 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 264, 271 |
| Conread position: | 2-224 |
| Cow position: | chr19:14959041-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 143 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-384 |
| Cow position: | chr19:23650097-23650479 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-442 |
| Cow position: | chr19:14960352-14959915 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 199, 0 |
| Conread position: | 2-451 |
| Cow position: | chr19:23613891-23614339 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 252, 264 |
| Conread position: | 2-489 |
| Cow position: | chr19:23649845-23650330 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 93, 103 |
| Conread position: | 2-490 |
| Cow position: | chr19:23614311-23614797 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 310 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 256, 268 |
| Conread position: | 7-308 |
| Cow position: | chr19:14959120-14958819 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 202 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 271, 261 |
| Conread position: | 11-379 |
| Cow position: | chr19:14940708-14941076 (view UCSC Genome Browser custom track) |
| Alignm length: | 373 |
| Alignm identity: | 257 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 132, 137 |
| Conread position: | 15-306 |
| Cow position: | chr19:14959601-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 265, 253 |
| Conread position: | 15-505 |
| Cow position: | chr19:23614156-23614642 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 239, 247 |
| Conread position: | 18-506 |
| Cow position: | chr19:23613655-23614139 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 371, 0 |
| Conread position: | 20-251 |
| Cow position: | chr19:14948242-14948011 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 154 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 23-449 |
| Cow position: | chr19:43570248-43569823 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 366, 0 |
| Conread position: | 24-444 |
| Cow position: | chr19:23614249-23614668 (view UCSC Genome Browser custom track) |
| Alignm length: | 421 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 368, 0 |
| Conread position: | 24-452 |
| Cow position: | chr19:23613997-23614424 (view UCSC Genome Browser custom track) |
| Alignm length: | 430 |
| Alignm identity: | 274 |
| Alignm E-value: | 9.80909e-45 |
| Alignm gaps (pig, cow): | 249, 233 |
| Conread position: | 24-459 |
| Cow position: | chr19:43570404-43569981 (view UCSC Genome Browser custom track) |
| Alignm length: | 439 |
| Alignm identity: | 288 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 245, 11 |
| Conread position: | 24-501 |
| Cow position: | chr19:14940385-14940858 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 258, 243 |
| Conread position: | 25-222 |
| Cow position: | chr19:23614922-23615117 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 141 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 27-277 |
| Cow position: | chr19:23614840-23615090 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 172 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 27-424 |
| Cow position: | chr19:23597093-23597489 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 277 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 0 |
| Conread position: | 29-319 |
| Cow position: | chr19:23614086-23614376 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 205 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 247, 232 |
| Conread position: | 29-371 |
| Cow position: | chr19:43570074-43569732 (view UCSC Genome Browser custom track) |
| Alignm length: | 344 |
| Alignm identity: | 221 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 24, 17 |
| Conread position: | 29-372 |
| Cow position: | chr19:23614758-23615101 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 247, 238 |
| Conread position: | 29-380 |
| Cow position: | chr19:23597347-23597698 (view UCSC Genome Browser custom track) |
| Alignm length: | 354 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 228 |
| Conread position: | 29-390 |
| Cow position: | chr19:14916029-14916386 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 235 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 60, 64 |
| Conread position: | 29-390 |
| Cow position: | chr19:14959669-14959310 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 245 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 23, 15 |
| Conread position: | 29-391 |
| Cow position: | chr19:14959176-14958820 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 231 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 328, 57 |
| Conread position: | 29-397 |
| Cow position: | chr19:20635399-20635030 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 245 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 97, 93 |
| Conread position: | 29-423 |
| Cow position: | chr19:14948484-14948092 (view UCSC Genome Browser custom track) |
| Alignm length: | 395 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 84, 0 |
| Conread position: | 29-424 |
| Cow position: | chr19:14940558-14940952 (view UCSC Genome Browser custom track) |
| Alignm length: | 397 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 162, 169 |
| Conread position: | 29-424 |
| Cow position: | chr19:23649368-23649762 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 256 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 29-430 |
| Cow position: | chr19:23597014-23597411 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 247 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 244, 27 |
| Conread position: | 29-443 |
| Cow position: | chr19:14959335-14958937 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 253 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 76, 29 |
| Conread position: | 29-447 |
| Cow position: | chr19:20678101-20678518 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 93, 98 |
| Conread position: | 29-452 |
| Cow position: | chr19:23649536-23649958 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 29-459 |
| Cow position: | chr19:23613582-23614011 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 238 |
| Conread position: | 29-488 |
| Cow position: | chr19:23613414-23613871 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 307 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 432, 363 |
| Conread position: | 29-488 |
| Cow position: | chr19:23649620-23650077 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 299 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 365, 381 |
| Conread position: | 29-489 |
| Cow position: | chr19:14960409-14959953 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 305 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 0 |
| Conread position: | 29-489 |
| Cow position: | chr19:20677513-20677971 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 284 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 29-489 |
| Cow position: | chr19:23613750-23614208 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 304 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 360, 0 |
| Conread position: | 29-506 |
| Cow position: | chr19:23614422-23614895 (view UCSC Genome Browser custom track) |
| Alignm length: | 479 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 71 |
| Conread position: | 32-451 |
| Cow position: | chr19:23596849-23597264 (view UCSC Genome Browser custom track) |
| Alignm length: | 420 |
| Alignm identity: | 266 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 183, 0 |
| Conread position: | 32-460 |
| Cow position: | chr19:14959257-14958838 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 278 |
| Alignm E-value: | 3.00004e-41 |
| Alignm gaps (pig, cow): | 297, 134 |
| Conread position: | 34-255 |
| Cow position: | chr19:20678442-20678663 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 161 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 164, 152 |
| Conread position: | 34-342 |
| Cow position: | chr19:20678022-20678330 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 203 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 166, 143 |
| Conread position: | 34-358 |
| Cow position: | chr19:20635646-20635322 (view UCSC Genome Browser custom track) |
| Alignm length: | 326 |
| Alignm identity: | 212 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 92, 88 |
| Conread position: | 34-390 |
| Cow position: | chr19:23649289-23649645 (view UCSC Genome Browser custom track) |
| Alignm length: | 357 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-34 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 34-489 |
| Cow position: | chr19:20678190-20678643 (view UCSC Genome Browser custom track) |
| Alignm length: | 460 |
| Alignm identity: | 296 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 146, 141 |
| Conread position: | 35-340 |
| Cow position: | chr19:20677771-20678076 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 209 |
| Alignm E-value: | 3.00018e-42 |
| Alignm gaps (pig, cow): | 246, 219 |
| Conread position: | 35-425 |
| Cow position: | chr19:20678275-20678664 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 257 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 64, 56 |
| Conread position: | 35-429 |
| Cow position: | chr19:14940648-14941041 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 296, 302 |
| Conread position: | 35-489 |
| Cow position: | chr19:20677687-20678139 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 285 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 57, 78 |
| Conread position: | 41-339 |
| Cow position: | chr19:20635303-20635005 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 205 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 240, 236 |
| Conread position: | 47-427 |
| Cow position: | chr19:14960475-14960098 (view UCSC Genome Browser custom track) |
| Alignm length: | 381 |
| Alignm identity: | 239 |
| Alignm E-value: | 4e-35 |
| Alignm gaps (pig, cow): | 322, 0 |
| Conread position: | 47-488 |
| Cow position: | chr19:14939988-14940427 (view UCSC Genome Browser custom track) |
| Alignm length: | 442 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 55-506 |
| Cow position: | chr19:23613356-23613803 (view UCSC Genome Browser custom track) |
| Alignm length: | 454 |
| Alignm identity: | 283 |
| Alignm E-value: | 2e-37 |
| Alignm gaps (pig, cow): | 218, 202 |
| Conread position: | 72-341 |
| Cow position: | chr19:20677307-20677573 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 169 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 52, 0 |
| Conread position: | 133-506 |
| Cow position: | chr19:23613350-23613719 (view UCSC Genome Browser custom track) |
| Alignm length: | 374 |
| Alignm identity: | 233 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 263, 0 |
Show alignments to all cow chromosomes.