Cow genome map

Conread name: Ss1.1-OvF2-UMC-p2mm4-014-f04.3

Conread position: 1-215
Cow position: chr2:82800234-82800448 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 144
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 0, 0

Conread position: 1-256
Cow position: chr2:48689338-48689083 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 161
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 0, 0

Conread position: 1-327
Cow position: chr2:48689505-48689180 (view UCSC Genome Browser custom track)
Alignm length: 328
Alignm identity: 211
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 250, 101

Conread position: 1-339
Cow position: chr2:5875146-5874808 (view UCSC Genome Browser custom track)
Alignm length: 339
Alignm identity: 204
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 1-339
Cow position: chr2:78755288-78755624 (view UCSC Genome Browser custom track)
Alignm length: 341
Alignm identity: 218
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 10, 29

Conread position: 1-394
Cow position: chr2:82799478-82799871 (view UCSC Genome Browser custom track)
Alignm length: 395
Alignm identity: 271
Alignm E-value: 0
Alignm gaps (pig, cow): 250, 271

Conread position: 1-428
Cow position: chr2:78755371-78755794 (view UCSC Genome Browser custom track)
Alignm length: 431
Alignm identity: 280
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 94, 100

Conread position: 1-433
Cow position: chr2:5874894-5874463 (view UCSC Genome Browser custom track)
Alignm length: 437
Alignm identity: 275
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 56, 39

Conread position: 1-436
Cow position: chr2:82799562-82799996 (view UCSC Genome Browser custom track)
Alignm length: 436
Alignm identity: 292
Alignm E-value: 0
Alignm gaps (pig, cow): 389, 0

Conread position: 1-450
Cow position: chr2:78754952-78755399 (view UCSC Genome Browser custom track)
Alignm length: 452
Alignm identity: 288
Alignm E-value: 1.96182e-44
Alignm gaps (pig, cow): 160, 179

Conread position: 1-491
Cow position: chr2:82799814-82800302 (view UCSC Genome Browser custom track)
Alignm length: 491
Alignm identity: 301
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 392, 0

Conread position: 2-318
Cow position: chr2:78756042-78756355 (view UCSC Genome Browser custom track)
Alignm length: 318
Alignm identity: 204
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 124, 72

Conread position: 2-352
Cow position: chr2:78754465-78754811 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 222
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 8, 28

Conread position: 2-380
Cow position: chr2:82800067-82800445 (view UCSC Genome Browser custom track)
Alignm length: 381
Alignm identity: 253
Alignm E-value: 0
Alignm gaps (pig, cow): 279, 275

Conread position: 2-451
Cow position: chr2:82799983-82800431 (view UCSC Genome Browser custom track)
Alignm length: 451
Alignm identity: 290
Alignm E-value: 0
Alignm gaps (pig, cow): 243, 256

Conread position: 8-390
Cow position: chr2:82799401-82799783 (view UCSC Genome Browser custom track)
Alignm length: 385
Alignm identity: 255
Alignm E-value: 0
Alignm gaps (pig, cow): 32, 24

Conread position: 9-256
Cow position: chr2:78756133-78756376 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 169
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 28, 12

Conread position: 19-435
Cow position: chr2:78754886-78755301 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 264
Alignm E-value: 5.00264e-43
Alignm gaps (pig, cow): 373, 0

Conread position: 28-395
Cow position: chr2:5874699-5874332 (view UCSC Genome Browser custom track)
Alignm length: 373
Alignm identity: 237
Alignm E-value: 4e-30
Alignm gaps (pig, cow): 67, 76

Conread position: 29-299
Cow position: chr2:82800178-82800448 (view UCSC Genome Browser custom track)
Alignm length: 272
Alignm identity: 184
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 244, 238

Conread position: 29-341
Cow position: chr2:86465834-86466146 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 116, 100

Conread position: 29-391
Cow position: chr2:82799758-82800120 (view UCSC Genome Browser custom track)
Alignm length: 364
Alignm identity: 233
Alignm E-value: 9e-38
Alignm gaps (pig, cow): 308, 303

Conread position: 29-424
Cow position: chr2:78754812-78755206 (view UCSC Genome Browser custom track)
Alignm length: 397
Alignm identity: 254
Alignm E-value: 4.00001e-41
Alignm gaps (pig, cow): 310, 322

Conread position: 29-424
Cow position: chr2:86465078-86465472 (view UCSC Genome Browser custom track)
Alignm length: 398
Alignm identity: 241
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 169, 164

Conread position: 29-434
Cow position: chr2:5875034-5874630 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 249
Alignm E-value: 7e-25
Alignm gaps (pig, cow): 90, 72

Conread position: 32-312
Cow position: chr2:48689391-48689111 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 187
Alignm E-value: 5e-33
Alignm gaps (pig, cow): 159, 153

Conread position: 34-330
Cow position: chr2:86465335-86465631 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 198
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 0, 0

Conread position: 34-339
Cow position: chr2:86465167-86465471 (view UCSC Genome Browser custom track)
Alignm length: 308
Alignm identity: 199
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 92, 82

Conread position: 34-351
Cow position: chr2:86465923-86466238 (view UCSC Genome Browser custom track)
Alignm length: 323
Alignm identity: 205
Alignm E-value: 5e-22
Alignm gaps (pig, cow): 62, 70

Conread position: 34-490
Cow position: chr2:86465419-86465873 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 275
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 238, 223

Conread position: 34-506
Cow position: chr2:78755905-78756371 (view UCSC Genome Browser custom track)
Alignm length: 477
Alignm identity: 293
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 114, 103

Conread position: 35-330
Cow position: chr2:86465589-86465883 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 187
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 5, 0

Conread position: 40-424
Cow position: chr2:86465761-86466144 (view UCSC Genome Browser custom track)
Alignm length: 387
Alignm identity: 233
Alignm E-value: 6e-24
Alignm gaps (pig, cow): 172, 180

Conread position: 44-390
Cow position: chr2:78755663-78756009 (view UCSC Genome Browser custom track)
Alignm length: 349
Alignm identity: 220
Alignm E-value: 4e-31
Alignm gaps (pig, cow): 133, 145

Conread position: 51-457
Cow position: chr2:5875180-5874775 (view UCSC Genome Browser custom track)
Alignm length: 410
Alignm identity: 251
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 225, 209

Conread position: 56-418
Cow position: chr2:48689534-48689174 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 227
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 139, 121

Conread position: 72-390
Cow position: chr2:86465289-86465607 (view UCSC Genome Browser custom track)
Alignm length: 320
Alignm identity: 202
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 27, 20

Conread position: 112-506
Cow position: chr2:78754811-78755201 (view UCSC Genome Browser custom track)
Alignm length: 396
Alignm identity: 243
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 215, 208

Conread position: 148-394
Cow position: chr2:82799457-82799703 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 165
Alignm E-value: 9e-28
Alignm gaps (pig, cow): 181, 200

Show alignments to all cow chromosomes.