Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-215 |
| Cow position: | chr23:25660523-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-222 |
| Cow position: | chr23:24560350-24560129 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 163 |
| Alignm E-value: | 5.99994e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-256 |
| Cow position: | chr23:24522448-24522193 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-295 |
| Cow position: | chr23:24521942-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 6e-21 |
| Alignm gaps (pig, cow): | 171, 214 |
| Conread position: | 1-295 |
| Cow position: | chr23:25724007-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 201 |
| Alignm E-value: | 5e-40 |
| Alignm gaps (pig, cow): | 281, 275 |
| Conread position: | 1-298 |
| Cow position: | chr23:24546958-24546661 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-311 |
| Cow position: | chr23:24639756-24640066 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-390 |
| Cow position: | chr23:24522781-24522395 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 250 |
| Alignm E-value: | 2e-39 |
| Alignm gaps (pig, cow): | 200, 173 |
| Conread position: | 1-404 |
| Cow position: | chr23:25626651-25627054 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 188, 173 |
| Conread position: | 1-451 |
| Cow position: | chr23:25626570-25627016 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 322 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 209, 14 |
| Conread position: | 1-461 |
| Cow position: | chr23:25626318-25626772 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 302 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 123, 118 |
| Conread position: | 1-478 |
| Cow position: | chr23:25698536-25698061 (view UCSC Genome Browser custom track) |
| Alignm length: | 482 |
| Alignm identity: | 300 |
| Alignm E-value: | 5e-39 |
| Alignm gaps (pig, cow): | 213, 228 |
| Conread position: | 1-489 |
| Cow position: | chr23:24560686-24560200 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 345 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 388, 0 |
| Conread position: | 1-489 |
| Cow position: | chr23:24560770-24560284 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-490 |
| Cow position: | chr23:24547210-24546723 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 1-490 |
| Cow position: | chr23:25660187-25660674 (view UCSC Genome Browser custom track) |
| Alignm length: | 492 |
| Alignm identity: | 325 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 203, 193 |
| Conread position: | 1-575 |
| Cow position: | chr23:24535841-24535266 (view UCSC Genome Browser custom track) |
| Alignm length: | 583 |
| Alignm identity: | 510 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 514, 424 |
| Conread position: | 2-371 |
| Cow position: | chr23:24547041-24546672 (view UCSC Genome Browser custom track) |
| Alignm length: | 370 |
| Alignm identity: | 254 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-372 |
| Cow position: | chr23:24654070-24654439 (view UCSC Genome Browser custom track) |
| Alignm length: | 372 |
| Alignm identity: | 244 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 349, 327 |
| Conread position: | 2-378 |
| Cow position: | chr23:25660356-25660732 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 30 |
| Conread position: | 2-379 |
| Cow position: | chr23:24522363-24521971 (view UCSC Genome Browser custom track) |
| Alignm length: | 393 |
| Alignm identity: | 241 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 198, 0 |
| Conread position: | 2-385 |
| Cow position: | chr23:24626345-24626729 (view UCSC Genome Browser custom track) |
| Alignm length: | 385 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 379, 0 |
| Conread position: | 2-391 |
| Cow position: | chr23:24639673-24640062 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 267 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 280, 274 |
| Conread position: | 2-424 |
| Cow position: | chr23:24639506-24639926 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 0 |
| Conread position: | 2-451 |
| Cow position: | chr23:24639590-24640037 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 298 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 271, 7 |
| Conread position: | 2-452 |
| Cow position: | chr23:24547125-24546676 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 315 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 2-497 |
| Cow position: | chr23:24560517-24560023 (view UCSC Genome Browser custom track) |
| Alignm length: | 499 |
| Alignm identity: | 364 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 414, 399 |
| Conread position: | 2-506 |
| Cow position: | chr23:24639253-24639753 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 333 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 148 |
| Conread position: | 2-508 |
| Cow position: | chr23:25626067-25626569 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 317 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 3-443 |
| Cow position: | chr23:24535923-24535484 (view UCSC Genome Browser custom track) |
| Alignm length: | 441 |
| Alignm identity: | 282 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 7-457 |
| Cow position: | chr23:24536003-24535554 (view UCSC Genome Browser custom track) |
| Alignm length: | 452 |
| Alignm identity: | 288 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 245, 252 |
| Conread position: | 7-490 |
| Cow position: | chr23:24547288-24546807 (view UCSC Genome Browser custom track) |
| Alignm length: | 484 |
| Alignm identity: | 329 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 386, 0 |
| Conread position: | 11-223 |
| Cow position: | chr23:24546864-24546652 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-379 |
| Cow position: | chr23:25724077-25723713 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 246 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 15-418 |
| Cow position: | chr23:24560840-24560438 (view UCSC Genome Browser custom track) |
| Alignm length: | 404 |
| Alignm identity: | 285 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 378, 0 |
| Conread position: | 19-299 |
| Cow position: | chr23:25660457-25660737 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 20-490 |
| Cow position: | chr23:24639439-24639907 (view UCSC Genome Browser custom track) |
| Alignm length: | 471 |
| Alignm identity: | 316 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 372, 0 |
| Conread position: | 24-430 |
| Cow position: | chr23:25626173-25626578 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 268, 262 |
| Conread position: | 29-325 |
| Cow position: | chr23:24626456-24626750 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 203 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 279, 0 |
| Conread position: | 29-358 |
| Cow position: | chr23:24522504-24522175 (view UCSC Genome Browser custom track) |
| Alignm length: | 331 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 248 |
| Conread position: | 29-379 |
| Cow position: | chr23:25698424-25698074 (view UCSC Genome Browser custom track) |
| Alignm length: | 352 |
| Alignm identity: | 231 |
| Alignm E-value: | 6.99949e-42 |
| Alignm gaps (pig, cow): | 20, 33 |
| Conread position: | 29-442 |
| Cow position: | chr23:24522669-24522260 (view UCSC Genome Browser custom track) |
| Alignm length: | 414 |
| Alignm identity: | 265 |
| Alignm E-value: | 7.9874e-44 |
| Alignm gaps (pig, cow): | 59, 0 |
| Conread position: | 29-451 |
| Cow position: | chr23:25626010-25626431 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 284 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 224, 243 |
| Conread position: | 29-452 |
| Cow position: | chr23:25698676-25698254 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 278 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 222, 229 |
| Conread position: | 29-490 |
| Cow position: | chr23:25626262-25626718 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 291 |
| Alignm E-value: | 2.94273e-44 |
| Alignm gaps (pig, cow): | 321, 0 |
| Conread position: | 30-452 |
| Cow position: | chr23:24639197-24639618 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 280 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 184, 192 |
| Conread position: | 44-443 |
| Cow position: | chr23:25660146-25660544 (view UCSC Genome Browser custom track) |
| Alignm length: | 400 |
| Alignm identity: | 283 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 349, 0 |
| Conread position: | 44-451 |
| Cow position: | chr23:24626303-24626709 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 17 |
| Conread position: | 47-459 |
| Cow position: | chr23:24522815-24522411 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 96, 6 |
| Conread position: | 48-452 |
| Cow position: | chr23:24522569-24522166 (view UCSC Genome Browser custom track) |
| Alignm length: | 405 |
| Alignm identity: | 258 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 345, 0 |
| Conread position: | 49-383 |
| Cow position: | chr23:24654032-24654367 (view UCSC Genome Browser custom track) |
| Alignm length: | 336 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 6, 0 |
| Conread position: | 51-451 |
| Cow position: | chr23:24560888-24560489 (view UCSC Genome Browser custom track) |
| Alignm length: | 401 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 339, 0 |
| Conread position: | 53-451 |
| Cow position: | chr23:24547326-24546929 (view UCSC Genome Browser custom track) |
| Alignm length: | 399 |
| Alignm identity: | 269 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 343, 0 |
| Conread position: | 55-379 |
| Cow position: | chr23:24521972-24521653 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 211 |
| Alignm E-value: | 6e-30 |
| Alignm gaps (pig, cow): | 198, 244 |
| Conread position: | 64-506 |
| Cow position: | chr23:24536030-24535592 (view UCSC Genome Browser custom track) |
| Alignm length: | 443 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 328, 0 |
| Conread position: | 71-448 |
| Cow position: | chr23:25724105-25723730 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 252 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 325 |
| Conread position: | 90-430 |
| Cow position: | chr23:25698699-25698360 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 220 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 58, 35 |
| Conread position: | 99-488 |
| Cow position: | chr23:24626274-24626661 (view UCSC Genome Browser custom track) |
| Alignm length: | 392 |
| Alignm identity: | 260 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 30, 20 |
| Conread position: | 132-504 |
| Cow position: | chr23:24536046-24535678 (view UCSC Genome Browser custom track) |
| Alignm length: | 375 |
| Alignm identity: | 242 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 159, 133 |
| Conread position: | 133-451 |
| Cow position: | chr23:24547330-24547013 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 259, 0 |
| Conread position: | 133-459 |
| Cow position: | chr23:24560890-24560565 (view UCSC Genome Browser custom track) |
| Alignm length: | 327 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-34 |
| Alignm gaps (pig, cow): | 260, 0 |
| Conread position: | 146-451 |
| Cow position: | chr23:24654046-24654350 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-28 |
| Alignm gaps (pig, cow): | 240, 260 |
| Conread position: | 153-451 |
| Cow position: | chr23:25724107-25723810 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-35 |
| Alignm gaps (pig, cow): | 128, 114 |
| Conread position: | 196-442 |
| Cow position: | chr23:24560911-24560666 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 161 |
| Alignm E-value: | 3e-23 |
| Alignm gaps (pig, cow): | 55, 68 |
| Conread position: | 211-390 |
| Cow position: | chr23:25660145-25660324 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 38, 49 |
Show alignments to all cow chromosomes.