Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-222 |
| Cow position: | chr28:9253390-9253611 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-327 |
| Cow position: | chr28:11333850-11333524 (view UCSC Genome Browser custom track) |
| Alignm length: | 329 |
| Alignm identity: | 221 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 251, 269 |
| Conread position: | 1-361 |
| Cow position: | chr28:7758527-7758887 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 228 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 125, 120 |
| Conread position: | 1-381 |
| Cow position: | chr28:34696199-34696579 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 251 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 125, 115 |
| Conread position: | 1-391 |
| Cow position: | chr28:33210263-33210654 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 268 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 1-443 |
| Cow position: | chr28:34695863-34696304 (view UCSC Genome Browser custom track) |
| Alignm length: | 448 |
| Alignm identity: | 285 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 117, 123 |
| Conread position: | 1-506 |
| Cow position: | chr28:11334186-11333685 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 311 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 2-305 |
| Cow position: | chr28:9299257-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 279, 263 |
| Conread position: | 2-345 |
| Cow position: | chr28:9253307-9253651 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 304, 0 |
| Conread position: | 2-390 |
| Cow position: | chr28:9290124-9290506 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 251 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 93, 84 |
| Conread position: | 2-425 |
| Cow position: | chr28:7757620-7758042 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 267 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 394, 0 |
| Conread position: | 2-451 |
| Cow position: | chr28:7758124-7758556 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 251 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 212, 0 |
| Conread position: | 2-451 |
| Cow position: | chr28:9253055-9253503 (view UCSC Genome Browser custom track) |
| Alignm length: | 450 |
| Alignm identity: | 291 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 390, 0 |
| Conread position: | 2-459 |
| Cow position: | chr28:7757872-7758328 (view UCSC Genome Browser custom track) |
| Alignm length: | 458 |
| Alignm identity: | 286 |
| Alignm E-value: | 8.40779e-45 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 2-506 |
| Cow position: | chr28:7757206-7757700 (view UCSC Genome Browser custom track) |
| Alignm length: | 509 |
| Alignm identity: | 317 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 29, 17 |
| Conread position: | 6-391 |
| Cow position: | chr28:11333929-11333544 (view UCSC Genome Browser custom track) |
| Alignm length: | 387 |
| Alignm identity: | 256 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 270, 263 |
| Conread position: | 7-358 |
| Cow position: | chr28:34679601-34679249 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 220 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 107, 60 |
| Conread position: | 7-508 |
| Cow position: | chr28:7757709-7758207 (view UCSC Genome Browser custom track) |
| Alignm length: | 502 |
| Alignm identity: | 319 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 385, 0 |
| Conread position: | 8-491 |
| Cow position: | chr28:9298692-9299170 (view UCSC Genome Browser custom track) |
| Alignm length: | 487 |
| Alignm identity: | 304 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 339, 122 |
| Conread position: | 9-508 |
| Cow position: | chr28:9252893-9253389 (view UCSC Genome Browser custom track) |
| Alignm length: | 504 |
| Alignm identity: | 309 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 48, 72 |
| Conread position: | 10-319 |
| Cow position: | chr28:7810635-7810944 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 11-332 |
| Cow position: | chr28:9290380-9290699 (view UCSC Genome Browser custom track) |
| Alignm length: | 324 |
| Alignm identity: | 220 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 169, 94 |
| Conread position: | 15-318 |
| Cow position: | chr28:11333668-11333371 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 191 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 236, 201 |
| Conread position: | 15-390 |
| Cow position: | chr28:7810556-7810931 (view UCSC Genome Browser custom track) |
| Alignm length: | 378 |
| Alignm identity: | 239 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 253, 244 |
| Conread position: | 15-424 |
| Cow position: | chr28:34696045-34696453 (view UCSC Genome Browser custom track) |
| Alignm length: | 411 |
| Alignm identity: | 257 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 279, 261 |
| Conread position: | 15-444 |
| Cow position: | chr28:7758457-7758885 (view UCSC Genome Browser custom track) |
| Alignm length: | 432 |
| Alignm identity: | 265 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 231, 252 |
| Conread position: | 19-310 |
| Cow position: | chr28:33210365-33210657 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 201, 0 |
| Conread position: | 20-397 |
| Cow position: | chr28:9290306-9290682 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 255 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 69 |
| Conread position: | 20-452 |
| Cow position: | chr28:34673493-34673924 (view UCSC Genome Browser custom track) |
| Alignm length: | 437 |
| Alignm identity: | 265 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 189, 155 |
| Conread position: | 25-430 |
| Cow position: | chr28:34695719-34696123 (view UCSC Genome Browser custom track) |
| Alignm length: | 408 |
| Alignm identity: | 255 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 256, 249 |
| Conread position: | 25-442 |
| Cow position: | chr28:34695970-34696387 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 270 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 15, 231 |
| Conread position: | 29-237 |
| Cow position: | chr28:7810738-7810946 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-384 |
| Cow position: | chr28:7758387-7758742 (view UCSC Genome Browser custom track) |
| Alignm length: | 359 |
| Alignm identity: | 243 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 243, 223 |
| Conread position: | 29-391 |
| Cow position: | chr28:7810411-7810764 (view UCSC Genome Browser custom track) |
| Alignm length: | 364 |
| Alignm identity: | 234 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 243, 114 |
| Conread position: | 29-393 |
| Cow position: | chr28:9290067-9290426 (view UCSC Genome Browser custom track) |
| Alignm length: | 365 |
| Alignm identity: | 226 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 141, 0 |
| Conread position: | 29-403 |
| Cow position: | chr28:34673418-34673793 (view UCSC Genome Browser custom track) |
| Alignm length: | 380 |
| Alignm identity: | 246 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 62, 74 |
| Conread position: | 29-424 |
| Cow position: | chr28:9253250-9253645 (view UCSC Genome Browser custom track) |
| Alignm length: | 398 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 244, 236 |
| Conread position: | 29-437 |
| Cow position: | chr28:7757563-7757970 (view UCSC Genome Browser custom track) |
| Alignm length: | 409 |
| Alignm identity: | 258 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-437 |
| Cow position: | chr28:7757983-7758391 (view UCSC Genome Browser custom track) |
| Alignm length: | 410 |
| Alignm identity: | 230 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 63, 71 |
| Conread position: | 29-442 |
| Cow position: | chr28:34696143-34696555 (view UCSC Genome Browser custom track) |
| Alignm length: | 415 |
| Alignm identity: | 260 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 254, 240 |
| Conread position: | 29-443 |
| Cow position: | chr28:9299130-9299529 (view UCSC Genome Browser custom track) |
| Alignm length: | 417 |
| Alignm identity: | 261 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 225, 56 |
| Conread position: | 29-451 |
| Cow position: | chr28:7757479-7757900 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 274 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-451 |
| Cow position: | chr28:9253166-9253587 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 281 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-459 |
| Cow position: | chr28:7810327-7810747 (view UCSC Genome Browser custom track) |
| Alignm length: | 433 |
| Alignm identity: | 276 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 67, 56 |
| Conread position: | 31-442 |
| Cow position: | chr28:9289982-9290390 (view UCSC Genome Browser custom track) |
| Alignm length: | 416 |
| Alignm identity: | 255 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 67, 233 |
| Conread position: | 31-451 |
| Cow position: | chr28:7757397-7757816 (view UCSC Genome Browser custom track) |
| Alignm length: | 422 |
| Alignm identity: | 272 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 357, 374 |
| Conread position: | 46-389 |
| Cow position: | chr28:9299217-9299560 (view UCSC Genome Browser custom track) |
| Alignm length: | 345 |
| Alignm identity: | 222 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 283, 291 |
| Conread position: | 50-506 |
| Cow position: | chr28:9253020-9253471 (view UCSC Genome Browser custom track) |
| Alignm length: | 457 |
| Alignm identity: | 294 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 11, 0 |
| Conread position: | 55-442 |
| Cow position: | chr28:33210233-33210620 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 193, 203 |
| Conread position: | 60-451 |
| Cow position: | chr28:7758334-7758724 (view UCSC Genome Browser custom track) |
| Alignm length: | 394 |
| Alignm identity: | 226 |
| Alignm E-value: | 1e-36 |
| Alignm gaps (pig, cow): | 213, 205 |
| Conread position: | 71-449 |
| Cow position: | chr28:7810285-7810653 (view UCSC Genome Browser custom track) |
| Alignm length: | 379 |
| Alignm identity: | 243 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 252, 0 |
| Conread position: | 71-451 |
| Cow position: | chr28:7810528-7810907 (view UCSC Genome Browser custom track) |
| Alignm length: | 383 |
| Alignm identity: | 241 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 18, 29 |
| Conread position: | 91-508 |
| Cow position: | chr28:34679601-34679187 (view UCSC Genome Browser custom track) |
| Alignm length: | 423 |
| Alignm identity: | 266 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 252, 52 |
| Conread position: | 130-413 |
| Cow position: | chr28:33210223-33210506 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 193 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 5, 204 |
| Conread position: | 132-452 |
| Cow position: | chr28:34673353-34673672 (view UCSC Genome Browser custom track) |
| Alignm length: | 322 |
| Alignm identity: | 199 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 116, 126 |
| Conread position: | 153-390 |
| Cow position: | chr28:7810283-7810520 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 0, 0 |
Show alignments to all cow chromosomes.