Cow genome map

Conread name: Ss1.1-OvF2-UMC-p2mm4-014-f04.3

Conread position: 1-256
Cow position: chr6:49341195-49341449 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 9.99967e-42
Alignm gaps (pig, cow): 245, 0

Conread position: 1-313
Cow position: chr6:49341111-49341423 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-383
Cow position: chr6:49396328-49396710 (view UCSC Genome Browser custom track)
Alignm length: 386
Alignm identity: 263
Alignm E-value: 0
Alignm gaps (pig, cow): 189, 196

Conread position: 1-390
Cow position: chr6:49340607-49340996 (view UCSC Genome Browser custom track)
Alignm length: 390
Alignm identity: 258
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 1-391
Cow position: chr6:49428263-49428653 (view UCSC Genome Browser custom track)
Alignm length: 392
Alignm identity: 237
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 329, 337

Conread position: 1-391
Cow position: chr6:49428431-49428821 (view UCSC Genome Browser custom track)
Alignm length: 393
Alignm identity: 239
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 281, 273

Conread position: 1-442
Cow position: chr6:49396412-49396852 (view UCSC Genome Browser custom track)
Alignm length: 442
Alignm identity: 277
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 388, 0

Conread position: 1-459
Cow position: chr6:49340439-49340896 (view UCSC Genome Browser custom track)
Alignm length: 460
Alignm identity: 301
Alignm E-value: 0
Alignm gaps (pig, cow): 276, 281

Conread position: 2-402
Cow position: chr6:49340524-49340925 (view UCSC Genome Browser custom track)
Alignm length: 402
Alignm identity: 269
Alignm E-value: 0
Alignm gaps (pig, cow): 384, 0

Conread position: 2-506
Cow position: chr6:49340860-49341360 (view UCSC Genome Browser custom track)
Alignm length: 507
Alignm identity: 331
Alignm E-value: 0
Alignm gaps (pig, cow): 13, 28

Conread position: 19-370
Cow position: chr6:49341045-49341396 (view UCSC Genome Browser custom track)
Alignm length: 352
Alignm identity: 244
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 20-483
Cow position: chr6:49340962-49341423 (view UCSC Genome Browser custom track)
Alignm length: 464
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 372, 0

Conread position: 27-458
Cow position: chr6:49362400-49362818 (view UCSC Genome Browser custom track)
Alignm length: 432
Alignm identity: 266
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 231, 0

Conread position: 28-380
Cow position: chr6:49396271-49396623 (view UCSC Genome Browser custom track)
Alignm length: 353
Alignm identity: 240
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 28-391
Cow position: chr6:49428710-49429073 (view UCSC Genome Browser custom track)
Alignm length: 365
Alignm identity: 226
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 84, 73

Conread position: 29-254
Cow position: chr6:49396776-49397001 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 151
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 0, 0

Conread position: 29-324
Cow position: chr6:49396692-49396987 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 196
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 252, 247

Conread position: 29-384
Cow position: chr6:49429131-49429486 (view UCSC Genome Browser custom track)
Alignm length: 357
Alignm identity: 234
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 252, 235

Conread position: 29-390
Cow position: chr6:49396524-49396885 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 0, 0

Conread position: 29-390
Cow position: chr6:49428963-49429324 (view UCSC Genome Browser custom track)
Alignm length: 362
Alignm identity: 216
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 0, 0

Conread position: 29-443
Cow position: chr6:49396194-49396601 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 275
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 222, 34

Conread position: 29-443
Cow position: chr6:49428795-49429208 (view UCSC Genome Browser custom track)
Alignm length: 417
Alignm identity: 249
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 161, 154

Conread position: 29-451
Cow position: chr6:49340719-49341140 (view UCSC Genome Browser custom track)
Alignm length: 424
Alignm identity: 277
Alignm E-value: 0
Alignm gaps (pig, cow): 357, 380

Conread position: 29-452
Cow position: chr6:49429047-49429469 (view UCSC Genome Browser custom track)
Alignm length: 425
Alignm identity: 261
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 364, 381

Conread position: 29-489
Cow position: chr6:49340803-49341261 (view UCSC Genome Browser custom track)
Alignm length: 461
Alignm identity: 305
Alignm E-value: 0
Alignm gaps (pig, cow): 364, 0

Conread position: 31-437
Cow position: chr6:49396112-49396511 (view UCSC Genome Browser custom track)
Alignm length: 409
Alignm identity: 266
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 17, 25

Conread position: 34-488
Cow position: chr6:49340388-49340840 (view UCSC Genome Browser custom track)
Alignm length: 455
Alignm identity: 285
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 359, 0

Conread position: 38-391
Cow position: chr6:49428384-49428737 (view UCSC Genome Browser custom track)
Alignm length: 358
Alignm identity: 235
Alignm E-value: 6e-37
Alignm gaps (pig, cow): 37, 33

Conread position: 71-391
Cow position: chr6:49428249-49428569 (view UCSC Genome Browser custom track)
Alignm length: 322
Alignm identity: 199
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 217, 206

Conread position: 92-508
Cow position: chr6:49340362-49340774 (view UCSC Genome Browser custom track)
Alignm length: 418
Alignm identity: 260
Alignm E-value: 5e-34
Alignm gaps (pig, cow): 226, 222

Show alignments to all cow chromosomes.