Cow genome map
| Conread name: | Ss1.1-OvF2-UMC-p2mm4-014-f04.3 |
| Conread position: | 1-358 |
| Cow position: | chr7:1015058-1015415 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 233 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 1-381 |
| Cow position: | chr7:42878653-42878273 (view UCSC Genome Browser custom track) |
| Alignm length: | 382 |
| Alignm identity: | 259 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 253, 281 |
| Conread position: | 1-390 |
| Cow position: | chr7:3180068-3180457 (view UCSC Genome Browser custom track) |
| Alignm length: | 391 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 266 |
| Conread position: | 1-424 |
| Cow position: | chr7:42879157-42878735 (view UCSC Genome Browser custom track) |
| Alignm length: | 425 |
| Alignm identity: | 287 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 257, 273 |
| Conread position: | 1-436 |
| Cow position: | chr7:42878905-42878471 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 181, 175 |
| Conread position: | 1-445 |
| Cow position: | chr7:3180320-3180763 (view UCSC Genome Browser custom track) |
| Alignm length: | 446 |
| Alignm identity: | 289 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 272, 266 |
| Conread position: | 1-459 |
| Cow position: | chr7:1014308-1014759 (view UCSC Genome Browser custom track) |
| Alignm length: | 459 |
| Alignm identity: | 281 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 326, 0 |
| Conread position: | 1-463 |
| Cow position: | chr7:18390281-18390740 (view UCSC Genome Browser custom track) |
| Alignm length: | 463 |
| Alignm identity: | 303 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 392, 0 |
| Conread position: | 1-488 |
| Cow position: | chr7:42879073-42878588 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 323 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 350, 342 |
| Conread position: | 1-489 |
| Cow position: | chr7:11601152-11600666 (view UCSC Genome Browser custom track) |
| Alignm length: | 489 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 0 |
| Conread position: | 1-490 |
| Cow position: | chr7:42878821-42878334 (view UCSC Genome Browser custom track) |
| Alignm length: | 490 |
| Alignm identity: | 311 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 391, 0 |
| Conread position: | 1-506 |
| Cow position: | chr7:1014806-1015307 (view UCSC Genome Browser custom track) |
| Alignm length: | 507 |
| Alignm identity: | 321 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 441, 391 |
| Conread position: | 1-506 |
| Cow position: | chr7:3179900-3180401 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 328 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 395, 0 |
| Conread position: | 2-306 |
| Cow position: | chr7:3180573-3180876 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 259, 222 |
| Conread position: | 2-311 |
| Cow position: | chr7:1015143-1015452 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 207 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 2-358 |
| Cow position: | chr7:1014141-1014497 (view UCSC Genome Browser custom track) |
| Alignm length: | 358 |
| Alignm identity: | 215 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 271, 255 |
| Conread position: | 2-451 |
| Cow position: | chr7:3179817-3180265 (view UCSC Genome Browser custom track) |
| Alignm length: | 451 |
| Alignm identity: | 295 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 341, 346 |
| Conread position: | 2-489 |
| Cow position: | chr7:3180237-3180722 (view UCSC Genome Browser custom track) |
| Alignm length: | 491 |
| Alignm identity: | 332 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 267, 256 |
| Conread position: | 2-506 |
| Cow position: | chr7:42879324-42878824 (view UCSC Genome Browser custom track) |
| Alignm length: | 506 |
| Alignm identity: | 318 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 6 |
| Conread position: | 3-498 |
| Cow position: | chr7:18390031-18390522 (view UCSC Genome Browser custom track) |
| Alignm length: | 497 |
| Alignm identity: | 312 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 96, 103 |
| Conread position: | 16-256 |
| Cow position: | chr7:11434521-11434281 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 160 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 109, 80 |
| Conread position: | 19-255 |
| Cow position: | chr7:1438470-1438706 (view UCSC Genome Browser custom track) |
| Alignm length: | 237 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-25 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 19-372 |
| Cow position: | chr7:18390467-18390820 (view UCSC Genome Browser custom track) |
| Alignm length: | 355 |
| Alignm identity: | 235 |
| Alignm E-value: | 4.06377e-44 |
| Alignm gaps (pig, cow): | 262, 258 |
| Conread position: | 24-460 |
| Cow position: | chr7:1014997-1015430 (view UCSC Genome Browser custom track) |
| Alignm length: | 438 |
| Alignm identity: | 286 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 249, 233 |
| Conread position: | 24-490 |
| Cow position: | chr7:42879218-42878754 (view UCSC Genome Browser custom track) |
| Alignm length: | 470 |
| Alignm identity: | 309 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 71, 78 |
| Conread position: | 26-489 |
| Cow position: | chr7:11600959-11600498 (view UCSC Genome Browser custom track) |
| Alignm length: | 465 |
| Alignm identity: | 286 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 322, 317 |
| Conread position: | 28-358 |
| Cow position: | chr7:3180515-3180844 (view UCSC Genome Browser custom track) |
| Alignm length: | 332 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 320, 272 |
| Conread position: | 28-451 |
| Cow position: | chr7:18389972-18390394 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 263 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 111, 128 |
| Conread position: | 29-256 |
| Cow position: | chr7:11600704-11600477 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 156 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-330 |
| Cow position: | chr7:8243282-8243582 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 189 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 169, 99 |
| Conread position: | 29-340 |
| Cow position: | chr7:8243701-8244010 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 163, 148 |
| Conread position: | 29-341 |
| Cow position: | chr7:8243030-8243342 (view UCSC Genome Browser custom track) |
| Alignm length: | 317 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-30 |
| Alignm gaps (pig, cow): | 145, 160 |
| Conread position: | 29-341 |
| Cow position: | chr7:8324964-8325276 (view UCSC Genome Browser custom track) |
| Alignm length: | 319 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 60, 75 |
| Conread position: | 29-341 |
| Cow position: | chr7:8325804-8326116 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 206 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 243, 231 |
| Conread position: | 29-343 |
| Cow position: | chr7:8277575-8277889 (view UCSC Genome Browser custom track) |
| Alignm length: | 318 |
| Alignm identity: | 212 |
| Alignm E-value: | 6e-36 |
| Alignm gaps (pig, cow): | 79, 70 |
| Conread position: | 29-345 |
| Cow position: | chr7:8277911-8278227 (view UCSC Genome Browser custom track) |
| Alignm length: | 321 |
| Alignm identity: | 206 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 83, 64 |
| Conread position: | 29-390 |
| Cow position: | chr7:18390393-18390754 (view UCSC Genome Browser custom track) |
| Alignm length: | 362 |
| Alignm identity: | 238 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 29-424 |
| Cow position: | chr7:18390225-18390619 (view UCSC Genome Browser custom track) |
| Alignm length: | 396 |
| Alignm identity: | 264 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-433 |
| Cow position: | chr7:1439870-1440272 (view UCSC Genome Browser custom track) |
| Alignm length: | 406 |
| Alignm identity: | 258 |
| Alignm E-value: | 8.99999e-40 |
| Alignm gaps (pig, cow): | 222, 101 |
| Conread position: | 29-451 |
| Cow position: | chr7:1014750-1015171 (view UCSC Genome Browser custom track) |
| Alignm length: | 424 |
| Alignm identity: | 273 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 161, 169 |
| Conread position: | 29-459 |
| Cow position: | chr7:3179760-3180189 (view UCSC Genome Browser custom track) |
| Alignm length: | 431 |
| Alignm identity: | 293 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 363, 0 |
| Conread position: | 29-488 |
| Cow position: | chr7:1439787-1440242 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 281 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 67, 57 |
| Conread position: | 29-489 |
| Cow position: | chr7:1014918-1015376 (view UCSC Genome Browser custom track) |
| Alignm length: | 462 |
| Alignm identity: | 308 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 76 |
| Conread position: | 29-489 |
| Cow position: | chr7:3180180-3180638 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 306 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 367, 0 |
| Conread position: | 31-489 |
| Cow position: | chr7:1014668-1015124 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 297 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 59, 64 |
| Conread position: | 33-340 |
| Cow position: | chr7:8325136-8325443 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 206 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 164, 144 |
| Conread position: | 33-457 |
| Cow position: | chr7:11601204-11600781 (view UCSC Genome Browser custom track) |
| Alignm length: | 427 |
| Alignm identity: | 261 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 147, 143 |
| Conread position: | 34-339 |
| Cow position: | chr7:8325473-8325778 (view UCSC Genome Browser custom track) |
| Alignm length: | 308 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 157, 164 |
| Conread position: | 34-341 |
| Cow position: | chr7:8325221-8325528 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 57, 79 |
| Conread position: | 34-369 |
| Cow position: | chr7:1014257-1014592 (view UCSC Genome Browser custom track) |
| Alignm length: | 337 |
| Alignm identity: | 224 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 314, 307 |
| Conread position: | 35-341 |
| Cow position: | chr7:11600782-11600476 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 145, 140 |
| Conread position: | 35-373 |
| Cow position: | chr7:3180438-3180776 (view UCSC Genome Browser custom track) |
| Alignm length: | 339 |
| Alignm identity: | 239 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 0, 0 |
| Conread position: | 35-390 |
| Cow position: | chr7:8278001-8278356 (view UCSC Genome Browser custom track) |
| Alignm length: | 361 |
| Alignm identity: | 228 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 73, 52 |
| Conread position: | 35-424 |
| Cow position: | chr7:18390147-18390535 (view UCSC Genome Browser custom track) |
| Alignm length: | 390 |
| Alignm identity: | 263 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 358, 0 |
| Conread position: | 36-345 |
| Cow position: | chr7:8278170-8278477 (view UCSC Genome Browser custom track) |
| Alignm length: | 312 |
| Alignm identity: | 201 |
| Alignm E-value: | 8e-29 |
| Alignm gaps (pig, cow): | 77, 64 |
| Conread position: | 41-341 |
| Cow position: | chr7:8277839-8278139 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 163, 138 |
| Conread position: | 41-341 |
| Cow position: | chr7:8325312-8325612 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-33 |
| Alignm gaps (pig, cow): | 81, 55 |
| Conread position: | 41-344 |
| Cow position: | chr7:8325732-8326035 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 50, 72 |
| Conread position: | 41-498 |
| Cow position: | chr7:8243545-8243998 (view UCSC Genome Browser custom track) |
| Alignm length: | 461 |
| Alignm identity: | 281 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 134, 150 |
| Conread position: | 46-339 |
| Cow position: | chr7:8277256-8277549 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 187 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 66, 44 |
| Conread position: | 46-341 |
| Cow position: | chr7:8324729-8325024 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 198 |
| Alignm E-value: | 7e-28 |
| Alignm gaps (pig, cow): | 68, 51 |
| Conread position: | 55-358 |
| Cow position: | chr7:8242804-8243107 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 58, 42 |
| Conread position: | 64-489 |
| Cow position: | chr7:3179711-3180134 (view UCSC Genome Browser custom track) |
| Alignm length: | 426 |
| Alignm identity: | 268 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 329, 0 |
| Conread position: | 91-424 |
| Cow position: | chr7:1014645-1014976 (view UCSC Genome Browser custom track) |
| Alignm length: | 335 |
| Alignm identity: | 209 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 227, 11 |
| Conread position: | 97-498 |
| Cow position: | chr7:3179660-3180057 (view UCSC Genome Browser custom track) |
| Alignm length: | 403 |
| Alignm identity: | 253 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 49, 37 |
| Conread position: | 112-458 |
| Cow position: | chr7:1439448-1439793 (view UCSC Genome Browser custom track) |
| Alignm length: | 353 |
| Alignm identity: | 225 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 144, 157 |
| Conread position: | 113-507 |
| Cow position: | chr7:8277237-8277629 (view UCSC Genome Browser custom track) |
| Alignm length: | 402 |
| Alignm identity: | 249 |
| Alignm E-value: | 4e-22 |
| Alignm gaps (pig, cow): | 14, 72 |
| Conread position: | 119-345 |
| Cow position: | chr7:11434502-11434276 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 148 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 79, 69 |
Show alignments to all cow chromosomes.