Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-105
Cow position: chr10:45299902-45299798 (view UCSC Genome Browser custom track)
Alignm length: 107
Alignm identity: 89
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 17

Conread position: 1-144
Cow position: chr10:53762030-53762171 (view UCSC Genome Browser custom track)
Alignm length: 146
Alignm identity: 121
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 64, 17

Conread position: 1-152
Cow position: chr10:6921809-6921660 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 119
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 41, 18

Conread position: 1-152
Cow position: chr10:31250648-31250796 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 119
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 38, 17

Conread position: 1-185
Cow position: chr10:9529899-9530081 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 145
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 17

Conread position: 1-199
Cow position: chr10:62325701-62325503 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 154
Alignm E-value: 7e-32
Alignm gaps (pig, cow): 41, 17

Conread position: 1-212
Cow position: chr10:30741470-30741255 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 161
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 64, 17

Conread position: 1-215
Cow position: chr10:35306890-35307095 (view UCSC Genome Browser custom track)
Alignm length: 216
Alignm identity: 162
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 17

Conread position: 1-230
Cow position: chr10:15873984-15874216 (view UCSC Genome Browser custom track)
Alignm length: 239
Alignm identity: 183
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 41, 16

Conread position: 1-235
Cow position: chr10:3986298-3986067 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 166
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 41, 18

Conread position: 1-249
Cow position: chr10:49624858-49624600 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 191
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 16

Conread position: 1-260
Cow position: chr10:19126822-19127079 (view UCSC Genome Browser custom track)
Alignm length: 265
Alignm identity: 198
Alignm E-value: 7.9874e-44
Alignm gaps (pig, cow): 64, 17

Conread position: 1-265
Cow position: chr10:23096685-23096954 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 40, 18

Conread position: 1-267
Cow position: chr10:50044552-50044827 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 1-267
Cow position: chr10:51220984-51221245 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 204
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 64, 18

Conread position: 1-274
Cow position: chr10:21424588-21424867 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-276
Cow position: chr10:8649096-8648831 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 206
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr10:19590672-19590951 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 200
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 42, 16

Conread position: 1-279
Cow position: chr10:26620470-26620737 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 205
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 36, 17

Conread position: 1-288
Cow position: chr10:6038248-6038534 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position: chr10:41984796-41985086 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 39, 17

Conread position: 1-288
Cow position: chr10:48255133-48255422 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 6.99949e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position: chr10:52589590-52589891 (view UCSC Genome Browser custom track)
Alignm length: 306
Alignm identity: 214
Alignm E-value: 3e-33
Alignm gaps (pig, cow): 40, 17

Conread position: 1-289
Cow position: chr10:24786199-24785903 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 18

Conread position: 1-289
Cow position: chr10:30449972-30450259 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 226
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr10:51925530-51925221 (view UCSC Genome Browser custom track)
Alignm length: 314
Alignm identity: 221
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 78, 18

Conread position: 1-289
Cow position: chr10:59153569-59153844 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 11

Conread position: 1-290
Cow position: chr10:57458801-57458523 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 207
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 41, 18

Conread position: 2-149
Cow position: chr10:68251902-68251757 (view UCSC Genome Browser custom track)
Alignm length: 149
Alignm identity: 110
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 40, 16

Conread position: 2-199
Cow position: chr10:31368642-31368843 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 155
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 16

Conread position: 2-244
Cow position: chr10:3115574-3115323 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 193
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 16

Conread position: 2-249
Cow position: chr10:19704423-19704666 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 40, 19

Conread position: 2-275
Cow position: chr10:32584002-32583726 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 192
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 30, 16

Conread position: 2-275
Cow position: chr10:39314789-39314527 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 200
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 40, 20

Conread position: 2-287
Cow position: chr10:23948829-23949117 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 219
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 40, 17

Conread position: 2-287
Cow position: chr10:55012222-55011943 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 212
Alignm E-value: 5.99994e-41
Alignm gaps (pig, cow): 64, 10

Conread position: 2-289
Cow position: chr10:20109861-20110138 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 63, 16

Conread position: 2-289
Cow position: chr10:38739619-38739353 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 209
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 51, 17

Conread position: 2-290
Cow position: chr10:62516972-62516675 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 3-199
Cow position: chr10:15391579-15391381 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 59, 20

Conread position: 3-207
Cow position: chr10:23404290-23404082 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 156
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 39, 12

Conread position: 3-244
Cow position: chr10:27576544-27576309 (view UCSC Genome Browser custom track)
Alignm length: 247
Alignm identity: 188
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 40, 9

Conread position: 3-247
Cow position: chr10:8760074-8760296 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 184
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 62, 15

Conread position: 3-248
Cow position: chr10:56705497-56705749 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 182
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 16

Conread position: 3-275
Cow position: chr10:9341646-9341918 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-276
Cow position: chr10:29339307-29339571 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 38, 16

Conread position: 3-279
Cow position: chr10:8077072-8077337 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 39, 16

Conread position: 3-279
Cow position: chr10:38429460-38429734 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 16

Conread position: 3-283
Cow position: chr10:16649839-16650118 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 190
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 39, 121

Conread position: 3-287
Cow position: chr10:17863675-17863386 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 206
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 38, 16

Conread position: 3-288
Cow position: chr10:11032411-11032697 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 242
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 16

Conread position: 3-289
Cow position: chr10:31911010-31910741 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 211
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 39, 16

Conread position: 3-289
Cow position: chr10:58608191-58607906 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 203
Alignm E-value: 5e-28
Alignm gaps (pig, cow): 39, 15

Conread position: 3-298
Cow position: chr10:22479637-22479934 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 4-284
Cow position: chr10:25479188-25478907 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 27

Conread position: 5-139
Cow position: chr10:8330700-8330566 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 8e-23
Alignm gaps (pig, cow): 36, 14

Conread position: 12-279
Cow position: chr10:46468616-46468877 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 211
Alignm E-value: 0
Alignm gaps (pig, cow): 30, 11

Conread position: 15-180
Cow position: chr10:11404058-11404227 (view UCSC Genome Browser custom track)
Alignm length: 171
Alignm identity: 126
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 27, 112

Conread position: 15-273
Cow position: chr10:28038854-28039120 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 188
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 26, 187

Conread position: 15-288
Cow position: chr10:9568543-9568825 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 213
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 27, 189

Conread position: 15-288
Cow position: chr10:69544263-69544530 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 205
Alignm E-value: 3e-35
Alignm gaps (pig, cow): 20, 112

Conread position: 15-289
Cow position: chr10:8412972-8413252 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 118

Conread position: 16-290
Cow position: chr10:65072038-65072309 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 207
Alignm E-value: 5e-39
Alignm gaps (pig, cow): 26, 160

Conread position: 17-288
Cow position: chr10:31855412-31855129 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 48, 183

Conread position: 18-141
Cow position: chr10:42139680-42139804 (view UCSC Genome Browser custom track)
Alignm length: 126
Alignm identity: 98
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 24, 113

Conread position: 18-284
Cow position: chr10:23135387-23135134 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 207
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 24, 99

Conread position: 20-289
Cow position: chr10:35792000-35791733 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 191
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 20, 40

Conread position: 23-149
Cow position: chr10:20312948-20313076 (view UCSC Genome Browser custom track)
Alignm length: 130
Alignm identity: 101
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 19, 49

Conread position: 23-276
Cow position: chr10:22977609-22977854 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 202
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 16, 33

Conread position: 27-279
Cow position: chr10:20478966-20478701 (view UCSC Genome Browser custom track)
Alignm length: 266
Alignm identity: 204
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 0

Conread position: 29-289
Cow position: chr10:38015942-38015691 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 205
Alignm E-value: 9e-35
Alignm gaps (pig, cow): 13, 31

Conread position: 43-310
Cow position: chr10:17698974-17699235 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 203
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 22, 74

Conread position: 50-276
Cow position: chr10:57563925-57563701 (view UCSC Genome Browser custom track)
Alignm length: 231
Alignm identity: 183
Alignm E-value: 0
Alignm gaps (pig, cow): 15, 107

Conread position: 60-199
Cow position: chr10:613869-613727 (view UCSC Genome Browser custom track)
Alignm length: 144
Alignm identity: 114
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 82, 29

Conread position: 77-289
Cow position: chr10:64596440-64596229 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 161
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 200, 67

Conread position: 81-289
Cow position: chr10:58399274-58399481 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 166
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 58, 123

Conread position: 82-279
Cow position: chr10:22652705-22652510 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 157
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 100, 8

Conread position: 82-288
Cow position: chr10:47493204-47493404 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 57, 80

Conread position: 82-289
Cow position: chr10:36231981-36231784 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 151
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 186, 95

Conread position: 82-289
Cow position: chr10:40645929-40645734 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 146
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 41, 0

Conread position: 85-288
Cow position: chr10:67020625-67020427 (view UCSC Genome Browser custom track)
Alignm length: 207
Alignm identity: 148
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 94, 53

Conread position: 104-288
Cow position: chr10:11060184-11060002 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 140
Alignm E-value: 5e-29
Alignm gaps (pig, cow): 39, 90

Conread position: 115-289
Cow position: chr10:3180648-3180818 (view UCSC Genome Browser custom track)
Alignm length: 176
Alignm identity: 141
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 112, 57

Conread position: 132-284
Cow position: chr10:24292240-24292393 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 127
Alignm E-value: 2e-30
Alignm gaps (pig, cow): 9, 25

Conread position: 135-289
Cow position: chr10:2394512-2394663 (view UCSC Genome Browser custom track)
Alignm length: 158
Alignm identity: 127
Alignm E-value: 6e-30
Alignm gaps (pig, cow): 40, 64

Conread position: 162-282
Cow position: chr10:25971050-25970929 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 102
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 18, 92

Show alignments to all cow chromosomes.