Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-127 |
| Cow position: | chr12:5497749-5497875 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-136 |
| Cow position: | chr12:7645732-7645865 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-136 |
| Cow position: | chr12:18093966-18093831 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 64, 22 |
| Conread position: | 1-145 |
| Cow position: | chr12:17262928-17262783 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 115 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-170 |
| Cow position: | chr12:4583022-4582849 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 134 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-179 |
| Cow position: | chr12:31528779-31528955 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 138 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-186 |
| Cow position: | chr12:24204236-24204423 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 154 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 42, 15 |
| Conread position: | 1-198 |
| Cow position: | chr12:29691120-29691324 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-229 |
| Cow position: | chr12:17109819-17110045 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 165 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 17 |
| Conread position: | 1-240 |
| Cow position: | chr12:15230740-15230981 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 182 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 1-275 |
| Cow position: | chr12:48425786-48425525 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-279 |
| Cow position: | chr12:5899587-5899328 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-284 |
| Cow position: | chr12:25312297-25312581 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-286 |
| Cow position: | chr12:23983740-23983453 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 204 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 9, 153 |
| Conread position: | 1-287 |
| Cow position: | chr12:16543501-16543781 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 40, 154 |
| Conread position: | 1-288 |
| Cow position: | chr12:31198844-31198553 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr12:41642508-41642222 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-288 |
| Cow position: | chr12:44057591-44057294 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 225 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr12:5797488-5797758 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 1-289 |
| Cow position: | chr12:18768994-18769288 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr12:21304079-21304358 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 1-289 |
| Cow position: | chr12:21861731-21861998 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-230 |
| Cow position: | chr12:3134431-3134651 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 169 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 33, 17 |
| Conread position: | 2-284 |
| Cow position: | chr12:27038667-27038973 (view UCSC Genome Browser custom track) |
| Alignm length: | 313 |
| Alignm identity: | 232 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-289 |
| Cow position: | chr12:23379647-23379357 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 63, 17 |
| Conread position: | 3-168 |
| Cow position: | chr12:40715970-40716134 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 129 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-230 |
| Cow position: | chr12:14325197-14325423 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-270 |
| Cow position: | chr12:30065010-30064752 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-276 |
| Cow position: | chr12:1223270-1223546 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-284 |
| Cow position: | chr12:24559433-24559148 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-285 |
| Cow position: | chr12:21829147-21828878 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-294 |
| Cow position: | chr12:25619303-25619595 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 53, 16 |
| Conread position: | 5-284 |
| Cow position: | chr12:3756974-3757247 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 20-182 |
| Cow position: | chr12:18553069-18552913 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 22, 43 |
| Conread position: | 20-304 |
| Cow position: | chr12:8868822-8869108 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 22, 63 |
| Conread position: | 24-279 |
| Cow position: | chr12:38484338-38484603 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.96182e-44 |
| Alignm gaps (pig, cow): | 18, 55 |
| Conread position: | 25-230 |
| Cow position: | chr12:14523986-14523786 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 158 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 17, 109 |
| Conread position: | 27-279 |
| Cow position: | chr12:44743546-44743289 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 13, 91 |
| Conread position: | 39-279 |
| Cow position: | chr12:41979274-41979504 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 26, 41 |
| Conread position: | 44-288 |
| Cow position: | chr12:48406140-48405914 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 21, 47 |
| Conread position: | 46-288 |
| Cow position: | chr12:20312140-20312380 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 19, 155 |
| Conread position: | 57-289 |
| Cow position: | chr12:40910268-40910505 (view UCSC Genome Browser custom track) |
| Alignm length: | 241 |
| Alignm identity: | 165 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 8, 141 |
| Conread position: | 80-289 |
| Cow position: | chr12:37394717-37394491 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 166 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 57, 189 |
| Conread position: | 81-289 |
| Cow position: | chr12:16851014-16851223 (view UCSC Genome Browser custom track) |
| Alignm length: | 213 |
| Alignm identity: | 159 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 82-289 |
| Cow position: | chr12:1488037-1487823 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 152 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 57, 174 |
| Conread position: | 97-274 |
| Cow position: | chr12:34089820-34089641 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 54, 60 |
| Conread position: | 98-275 |
| Cow position: | chr12:32400177-32399998 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 130 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 39, 139 |
| Conread position: | 109-284 |
| Cow position: | chr12:12938955-12939135 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 142 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 18, 96 |
| Conread position: | 114-289 |
| Cow position: | chr12:6117864-6117686 (view UCSC Genome Browser custom track) |
| Alignm length: | 182 |
| Alignm identity: | 145 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 116-279 |
| Cow position: | chr12:18417530-18417363 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 5, 140 |
| Conread position: | 131-279 |
| Cow position: | chr12:35807625-35807477 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 118 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 73 |
| Conread position: | 133-286 |
| Cow position: | chr12:11696623-11696464 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 126 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 10, 71 |
| Conread position: | 137-275 |
| Cow position: | chr12:18081611-18081747 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 112 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 5, 37 |
| Conread position: | 144-294 |
| Cow position: | chr12:15622515-15622674 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 123 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 38, 113 |
Show alignments to all cow chromosomes.