Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-116
Cow position: chr13:11463479-11463367 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 17

Conread position: 1-116
Cow position: chr13:17991529-17991644 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 42, 17

Conread position: 1-120
Cow position: chr13:22082260-22082379 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 101
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 43, 17

Conread position: 1-139
Cow position: chr13:14099241-14099103 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 117
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 39, 17

Conread position: 1-139
Cow position: chr13:54815041-54814901 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 109
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 42, 18

Conread position: 1-171
Cow position: chr13:33347006-33347169 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 133
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 41, 17

Conread position: 1-178
Cow position: chr13:15091039-15090858 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 140
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 41, 18

Conread position: 1-199
Cow position: chr13:54969935-54969729 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 165
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 42, 14

Conread position: 1-207
Cow position: chr13:33955155-33954950 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 41, 17

Conread position: 1-214
Cow position: chr13:54470887-54471098 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 170
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 64, 18

Conread position: 1-221
Cow position: chr13:18550875-18551089 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 175
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 39, 17

Conread position: 1-230
Cow position: chr13:33161123-33160892 (view UCSC Genome Browser custom track)
Alignm length: 238
Alignm identity: 174
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 40, 17

Conread position: 1-230
Cow position: chr13:43155985-43155759 (view UCSC Genome Browser custom track)
Alignm length: 236
Alignm identity: 170
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 20

Conread position: 1-241
Cow position: chr13:21628010-21627762 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 180
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 64, 13

Conread position: 1-241
Cow position: chr13:22075541-22075787 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 191
Alignm E-value: 7.00649e-44
Alignm gaps (pig, cow): 41, 17

Conread position: 1-249
Cow position: chr13:25435253-25434998 (view UCSC Genome Browser custom track)
Alignm length: 261
Alignm identity: 183
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 31, 20

Conread position: 1-249
Cow position: chr13:46284738-46284494 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 202
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-250
Cow position: chr13:14220367-14220596 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 186
Alignm E-value: 8e-34
Alignm gaps (pig, cow): 17, 0

Conread position: 1-270
Cow position: chr13:23265603-23265881 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 196
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 42, 17

Conread position: 1-273
Cow position: chr13:33975301-33975562 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 201
Alignm E-value: 6e-32
Alignm gaps (pig, cow): 41, 18

Conread position: 1-279
Cow position: chr13:6759920-6759642 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 14

Conread position: 1-279
Cow position: chr13:7010343-7010616 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 209
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 42, 17

Conread position: 1-279
Cow position: chr13:9125541-9125821 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 1-279
Cow position: chr13:34995459-34995179 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 211
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 40, 17

Conread position: 1-279
Cow position: chr13:50739039-50739317 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 17

Conread position: 1-280
Cow position: chr13:661766-661485 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 220
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 1-280
Cow position: chr13:12521908-12521626 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 223
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 41, 18

Conread position: 1-284
Cow position: chr13:8245461-8245180 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 213
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 40, 18

Conread position: 1-288
Cow position: chr13:8839124-8838834 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 202
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 17, 31

Conread position: 1-288
Cow position: chr13:11768174-11767882 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 214
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position: chr13:12233583-12233297 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 47, 17

Conread position: 1-289
Cow position: chr13:9802938-9803228 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr13:30509934-30510220 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position: chr13:38898369-38898092 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 225
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 17

Conread position: 1-289
Cow position: chr13:54080944-54080643 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 224
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position: chr13:55843356-55843644 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 216
Alignm E-value: 7.00649e-43
Alignm gaps (pig, cow): 41, 18

Conread position: 1-289
Cow position: chr13:56674101-56673802 (view UCSC Genome Browser custom track)
Alignm length: 304
Alignm identity: 218
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 41, 21

Conread position: 2-136
Cow position: chr13:26508355-26508489 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 109
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 40, 17

Conread position: 2-285
Cow position: chr13:35719266-35718981 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 224
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 10

Conread position: 2-289
Cow position: chr13:17346681-17346968 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 238
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 2-289
Cow position: chr13:32717992-32717714 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 210
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 40, 17

Conread position: 2-290
Cow position: chr13:23585974-23586285 (view UCSC Genome Browser custom track)
Alignm length: 313
Alignm identity: 224
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 16, 221

Conread position: 3-122
Cow position: chr13:20156359-20156477 (view UCSC Genome Browser custom track)
Alignm length: 122
Alignm identity: 102
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 39, 15

Conread position: 3-180
Cow position: chr13:30271195-30271376 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 147
Alignm E-value: 9e-36
Alignm gaps (pig, cow): 40, 15

Conread position: 3-207
Cow position: chr13:35564184-35564377 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 156
Alignm E-value: 1e-26
Alignm gaps (pig, cow): 36, 16

Conread position: 3-254
Cow position: chr13:16327542-16327785 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 194
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 39, 16

Conread position: 3-275
Cow position: chr13:6621719-6621453 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 199
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 40, 15

Conread position: 3-275
Cow position: chr13:20180288-20180564 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 16

Conread position: 3-279
Cow position: chr13:14717467-14717186 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 211
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 39, 16

Conread position: 3-279
Cow position: chr13:24280128-24280393 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 205
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 7, 16

Conread position: 3-289
Cow position: chr13:3796015-3796306 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 4e-38
Alignm gaps (pig, cow): 38, 13

Conread position: 3-289
Cow position: chr13:32167438-32167144 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr13:35654218-35653931 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr13:46501194-46501465 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 214
Alignm E-value: 1.99993e-41
Alignm gaps (pig, cow): 62, 15

Conread position: 4-118
Cow position: chr13:55592164-55592049 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 94
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 36, 11

Conread position: 4-118
Cow position: chr13:55618245-55618130 (view UCSC Genome Browser custom track)
Alignm length: 117
Alignm identity: 95
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 38, 11

Conread position: 4-178
Cow position: chr13:52966751-52966923 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 141
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 61, 14

Conread position: 4-271
Cow position: chr13:34761557-34761817 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 208
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 61, 14

Conread position: 4-290
Cow position: chr13:4208941-4208652 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 29

Conread position: 5-176
Cow position: chr13:18761854-18761684 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 130
Alignm E-value: 4e-27
Alignm gaps (pig, cow): 35, 14

Conread position: 5-279
Cow position: chr13:49847797-49848072 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 2.8026e-45
Alignm gaps (pig, cow): 37, 14

Conread position: 12-243
Cow position: chr13:62169668-62169431 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 167
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 15, 79

Conread position: 12-275
Cow position: chr13:10932430-10932695 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 195
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 30, 183

Conread position: 15-184
Cow position: chr13:52748912-52748738 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 128
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 27, 0

Conread position: 15-249
Cow position: chr13:15945363-15945600 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 179
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 27, 188

Conread position: 15-275
Cow position: chr13:13578152-13577885 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 196
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 27, 161

Conread position: 15-279
Cow position: chr13:18350718-18350988 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 212
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 197

Conread position: 15-289
Cow position: chr13:46430422-46430140 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 186

Conread position: 15-290
Cow position: chr13:16343576-16343845 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 9e-25
Alignm gaps (pig, cow): 17, 12

Conread position: 16-194
Cow position: chr13:6893921-6894104 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 143
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 26, 102

Conread position: 16-271
Cow position: chr13:57326214-57325958 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 190
Alignm E-value: 1e-37
Alignm gaps (pig, cow): 50, 22

Conread position: 17-262
Cow position: chr13:12745557-12745805 (view UCSC Genome Browser custom track)
Alignm length: 254
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 184

Conread position: 17-288
Cow position: chr13:27314019-27314296 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 188
Alignm E-value: 2e-21
Alignm gaps (pig, cow): 24, 128

Conread position: 17-290
Cow position: chr13:41359646-41359911 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 195
Alignm E-value: 6e-31
Alignm gaps (pig, cow): 48, 63

Conread position: 20-284
Cow position: chr13:36771533-36771264 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 183
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 45, 92

Conread position: 20-294
Cow position: chr13:6945264-6945537 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 214
Alignm E-value: 8.40779e-45
Alignm gaps (pig, cow): 22, 61

Conread position: 25-224
Cow position: chr13:54696018-54695819 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 161
Alignm E-value: 5e-40
Alignm gaps (pig, cow): 40, 13

Conread position: 25-289
Cow position: chr13:23270314-23270052 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 190
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 7, 120

Conread position: 31-288
Cow position: chr13:29630755-29631018 (view UCSC Genome Browser custom track)
Alignm length: 270
Alignm identity: 202
Alignm E-value: 2e-40
Alignm gaps (pig, cow): 11, 169

Conread position: 39-275
Cow position: chr13:9664966-9665212 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 181
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 15, 109

Conread position: 59-289
Cow position: chr13:60487531-60487295 (view UCSC Genome Browser custom track)
Alignm length: 243
Alignm identity: 179
Alignm E-value: 2e-32
Alignm gaps (pig, cow): 30, 68

Conread position: 64-289
Cow position: chr13:21039665-21039437 (view UCSC Genome Browser custom track)
Alignm length: 233
Alignm identity: 160
Alignm E-value: 7e-23
Alignm gaps (pig, cow): 117, 90

Conread position: 72-288
Cow position: chr13:33631071-33631280 (view UCSC Genome Browser custom track)
Alignm length: 219
Alignm identity: 152
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 13, 70

Conread position: 78-289
Cow position: chr13:8201530-8201325 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 148
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 64, 0

Conread position: 79-249
Cow position: chr13:34191489-34191320 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 137
Alignm E-value: 5e-30
Alignm gaps (pig, cow): 64, 117

Conread position: 85-249
Cow position: chr13:21563699-21563864 (view UCSC Genome Browser custom track)
Alignm length: 168
Alignm identity: 124
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 89, 41

Conread position: 85-288
Cow position: chr13:29814497-29814705 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 166
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 57, 173

Conread position: 105-279
Cow position: chr13:39699783-39699955 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 141
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 16, 45

Conread position: 107-325
Cow position: chr13:548484-548700 (view UCSC Genome Browser custom track)
Alignm length: 223
Alignm identity: 156
Alignm E-value: 3e-24
Alignm gaps (pig, cow): 11, 77

Conread position: 115-289
Cow position: chr13:1766757-1766929 (view UCSC Genome Browser custom track)
Alignm length: 178
Alignm identity: 140
Alignm E-value: 7e-33
Alignm gaps (pig, cow): 64, 88

Conread position: 115-289
Cow position: chr13:24822778-24822606 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 20, 90

Conread position: 132-276
Cow position: chr13:58823722-58823866 (view UCSC Genome Browser custom track)
Alignm length: 148
Alignm identity: 114
Alignm E-value: 8e-24
Alignm gaps (pig, cow): 25, 69

Conread position: 134-289
Cow position: chr13:2302836-2302676 (view UCSC Genome Browser custom track)
Alignm length: 163
Alignm identity: 129
Alignm E-value: 4e-28
Alignm gaps (pig, cow): 12, 70

Conread position: 140-289
Cow position: chr13:6894104-6894255 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 123
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 35, 115

Conread position: 156-290
Cow position: chr13:24767413-24767546 (view UCSC Genome Browser custom track)
Alignm length: 138
Alignm identity: 109
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 26, 39

Conread position: 174-289
Cow position: chr13:11290774-11290660 (view UCSC Genome Browser custom track)
Alignm length: 118
Alignm identity: 96
Alignm E-value: 6e-21
Alignm gaps (pig, cow): 9, 28

Show alignments to all cow chromosomes.