Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-150 |
| Cow position: | chr14:21369296-21369445 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-189 |
| Cow position: | chr14:23008109-23008297 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 152 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-228 |
| Cow position: | chr14:28565401-28565616 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 171 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-244 |
| Cow position: | chr14:34256992-34256745 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 187 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-271 |
| Cow position: | chr14:47973912-47974184 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-273 |
| Cow position: | chr14:31399523-31399774 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 1-273 |
| Cow position: | chr14:37679076-37678800 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 1-274 |
| Cow position: | chr14:21691348-21691070 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 59, 18 |
| Conread position: | 1-274 |
| Cow position: | chr14:26108560-26108836 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 1-275 |
| Cow position: | chr14:8766631-8766912 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 204 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-275 |
| Cow position: | chr14:23107250-23107533 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 214 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-276 |
| Cow position: | chr14:7813639-7813368 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-280 |
| Cow position: | chr14:6985027-6984755 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-288 |
| Cow position: | chr14:43031724-43032026 (view UCSC Genome Browser custom track) |
| Alignm length: | 306 |
| Alignm identity: | 219 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr14:12601814-12602095 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 206 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 42, 21 |
| Conread position: | 1-289 |
| Cow position: | chr14:21018041-21018331 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr14:37333626-37333910 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-294 |
| Cow position: | chr14:8488124-8488407 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 2-207 |
| Cow position: | chr14:29860805-29861006 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 157 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 2-241 |
| Cow position: | chr14:20865381-20865148 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 181 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 131, 16 |
| Conread position: | 2-249 |
| Cow position: | chr14:27104011-27104260 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 191 |
| Alignm E-value: | 7.00649e-45 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 2-284 |
| Cow position: | chr14:13928196-13927903 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 181 |
| Conread position: | 2-289 |
| Cow position: | chr14:26960488-26960220 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 213 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 3-191 |
| Cow position: | chr14:2189565-2189754 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 143 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 3-249 |
| Cow position: | chr14:22657178-22657419 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 3-259 |
| Cow position: | chr14:7582520-7582263 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 208 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-275 |
| Cow position: | chr14:47483637-47483896 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 3-279 |
| Cow position: | chr14:12559549-12559280 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 3-279 |
| Cow position: | chr14:46962479-46962745 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 213 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-284 |
| Cow position: | chr14:47551346-47551063 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 65, 12 |
| Conread position: | 3-288 |
| Cow position: | chr14:31784898-31785194 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 3-289 |
| Cow position: | chr14:26448688-26448967 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 179, 15 |
| Conread position: | 15-137 |
| Cow position: | chr14:19022959-19022831 (view UCSC Genome Browser custom track) |
| Alignm length: | 129 |
| Alignm identity: | 103 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 28, 0 |
| Conread position: | 15-208 |
| Cow position: | chr14:45849277-45849082 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 27, 95 |
| Conread position: | 15-222 |
| Cow position: | chr14:20045490-20045704 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 167 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 27, 186 |
| Conread position: | 15-270 |
| Cow position: | chr14:18979261-18978999 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 177 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 27, 142 |
| Conread position: | 15-279 |
| Cow position: | chr14:10906668-10906923 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 51 |
| Conread position: | 16-279 |
| Cow position: | chr14:10742456-10742711 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 13 |
| Conread position: | 23-289 |
| Cow position: | chr14:10090505-10090772 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 204 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 19, 58 |
| Conread position: | 24-284 |
| Cow position: | chr14:39821117-39821377 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 14 |
| Conread position: | 29-289 |
| Cow position: | chr14:34221014-34221273 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 13, 42 |
| Conread position: | 34-269 |
| Cow position: | chr14:8518622-8518373 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 177 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 14, 183 |
| Conread position: | 37-279 |
| Cow position: | chr14:14221737-14221980 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 190 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 7, 23 |
| Conread position: | 39-289 |
| Cow position: | chr14:18449044-18448790 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 217 |
| Conread position: | 39-289 |
| Cow position: | chr14:19888256-19888006 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 26, 83 |
| Conread position: | 39-289 |
| Cow position: | chr14:39877627-39877390 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 26, 103 |
| Conread position: | 40-231 |
| Cow position: | chr14:33553150-33553342 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 149 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 49, 157 |
| Conread position: | 41-289 |
| Cow position: | chr14:19957941-19957692 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 188 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 11, 95 |
| Conread position: | 41-289 |
| Cow position: | chr14:39302389-39302147 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 178 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 25, 108 |
| Conread position: | 58-275 |
| Cow position: | chr14:26627820-26628038 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 169 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 26, 14 |
| Conread position: | 58-279 |
| Cow position: | chr14:18238127-18238349 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 30, 54 |
| Conread position: | 64-185 |
| Cow position: | chr14:21273812-21273934 (view UCSC Genome Browser custom track) |
| Alignm length: | 123 |
| Alignm identity: | 97 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 74, 0 |
| Conread position: | 82-273 |
| Cow position: | chr14:35819600-35819410 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 159 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 60, 115 |
| Conread position: | 82-287 |
| Cow position: | chr14:43865916-43865715 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 150 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 58, 39 |
| Conread position: | 82-288 |
| Cow position: | chr14:46751685-46751895 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 154 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 43, 117 |
| Conread position: | 97-235 |
| Cow position: | chr14:20284436-20284573 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 56 |
| Conread position: | 116-270 |
| Cow position: | chr14:48516972-48517122 (view UCSC Genome Browser custom track) |
| Alignm length: | 158 |
| Alignm identity: | 121 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 63, 87 |
| Conread position: | 116-289 |
| Cow position: | chr14:35712135-35711960 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 138 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 27, 88 |
| Conread position: | 132-275 |
| Cow position: | chr14:41654339-41654195 (view UCSC Genome Browser custom track) |
| Alignm length: | 148 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 8, 72 |
| Conread position: | 137-289 |
| Cow position: | chr14:12488633-12488483 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 43, 66 |
Show alignments to all cow chromosomes.