Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-145
Cow position: chr15:23109309-23109161 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 118
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 41, 11

Conread position: 1-145
Cow position: chr15:50561423-50561276 (view UCSC Genome Browser custom track)
Alignm length: 152
Alignm identity: 122
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 41, 17

Conread position: 1-159
Cow position: chr15:35283493-35283331 (view UCSC Genome Browser custom track)
Alignm length: 165
Alignm identity: 121
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 42, 17

Conread position: 1-186
Cow position: chr15:47821353-47821539 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 150
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 41, 18

Conread position: 1-230
Cow position: chr15:6749871-6749641 (view UCSC Genome Browser custom track)
Alignm length: 235
Alignm identity: 178
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 41, 17

Conread position: 1-235
Cow position: chr15:8022028-8022261 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 189
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-269
Cow position: chr15:24411395-24411658 (view UCSC Genome Browser custom track)
Alignm length: 275
Alignm identity: 194
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 41, 21

Conread position: 1-275
Cow position: chr15:17213432-17213699 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 199
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 41, 17

Conread position: 1-275
Cow position: chr15:22886532-22886802 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 209
Alignm E-value: 2.00386e-43
Alignm gaps (pig, cow): 41, 13

Conread position: 1-275
Cow position: chr15:31907624-31907899 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 217
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-276
Cow position: chr15:9000929-9001212 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 208
Alignm E-value: 3e-36
Alignm gaps (pig, cow): 40, 17

Conread position: 1-276
Cow position: chr15:20482873-20482589 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr15:26673607-26673342 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 212
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 64, 17

Conread position: 1-279
Cow position: chr15:27863352-27863072 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 42, 18

Conread position: 1-279
Cow position: chr15:36839199-36838925 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-279
Cow position: chr15:37964508-37964794 (view UCSC Genome Browser custom track)
Alignm length: 290
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr15:38322809-38323081 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 209
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 39, 17

Conread position: 1-280
Cow position: chr15:3572725-3572444 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-284
Cow position: chr15:12163545-12163259 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 1.99965e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 1-284
Cow position: chr15:34255748-34255487 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 207
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 60, 18

Conread position: 1-286
Cow position: chr15:39894571-39894850 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 202
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 41, 14

Conread position: 1-287
Cow position: chr15:22854383-22854671 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 17

Conread position: 1-287
Cow position: chr15:31182406-31182688 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 218
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 1-288
Cow position: chr15:30934569-30934287 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 218
Alignm E-value: 4.00001e-40
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr15:9178228-9177948 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 232
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 16

Conread position: 1-289
Cow position: chr15:31599308-31599600 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr15:53118301-53118587 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 212
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 39, 18

Conread position: 1-294
Cow position: chr15:52981812-52982085 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 220
Alignm E-value: 4.99997e-41
Alignm gaps (pig, cow): 280, 17

Conread position: 2-219
Cow position: chr15:35967510-35967294 (view UCSC Genome Browser custom track)
Alignm length: 227
Alignm identity: 169
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 41, 17

Conread position: 2-249
Cow position: chr15:24864290-24864047 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 183
Alignm E-value: 2e-31
Alignm gaps (pig, cow): 42, 17

Conread position: 2-259
Cow position: chr15:7883356-7883114 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 184
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 178, 10

Conread position: 2-276
Cow position: chr15:27247482-27247763 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 216
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 40, 18

Conread position: 2-279
Cow position: chr15:34037216-34036940 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 40, 17

Conread position: 2-288
Cow position: chr15:15214992-15215284 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 3-111
Cow position: chr15:10189339-10189447 (view UCSC Genome Browser custom track)
Alignm length: 111
Alignm identity: 93
Alignm E-value: 6e-23
Alignm gaps (pig, cow): 39, 18

Conread position: 3-151
Cow position: chr15:46005672-46005524 (view UCSC Genome Browser custom track)
Alignm length: 151
Alignm identity: 121
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 39, 16

Conread position: 3-198
Cow position: chr15:12036788-12036987 (view UCSC Genome Browser custom track)
Alignm length: 201
Alignm identity: 149
Alignm E-value: 5e-31
Alignm gaps (pig, cow): 39, 15

Conread position: 3-215
Cow position: chr15:27749201-27748997 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 164
Alignm E-value: 7e-35
Alignm gaps (pig, cow): 62, 15

Conread position: 3-241
Cow position: chr15:42195288-42195051 (view UCSC Genome Browser custom track)
Alignm length: 246
Alignm identity: 185
Alignm E-value: 1e-38
Alignm gaps (pig, cow): 62, 19

Conread position: 3-276
Cow position: chr15:5722686-5722415 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 206
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 38, 15

Conread position: 3-276
Cow position: chr15:31545373-31545099 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 198
Alignm E-value: 4e-29
Alignm gaps (pig, cow): 40, 12

Conread position: 3-279
Cow position: chr15:31617031-31616751 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 203
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 40, 12

Conread position: 3-280
Cow position: chr15:40117472-40117201 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 198
Alignm E-value: 9e-27
Alignm gaps (pig, cow): 39, 15

Conread position: 3-284
Cow position: chr15:39316866-39316575 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 197
Alignm E-value: 5e-21
Alignm gaps (pig, cow): 39, 18

Conread position: 3-288
Cow position: chr15:24977198-24976927 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 223
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 39, 16

Conread position: 3-289
Cow position: chr15:4278083-4277799 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr15:15921981-15922258 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 203
Alignm E-value: 1e-30
Alignm gaps (pig, cow): 34, 19

Conread position: 3-289
Cow position: chr15:23957689-23957968 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 9

Conread position: 3-290
Cow position: chr15:4856774-4857055 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 218
Alignm E-value: 6.02558e-44
Alignm gaps (pig, cow): 39, 12

Conread position: 4-159
Cow position: chr15:17788087-17788243 (view UCSC Genome Browser custom track)
Alignm length: 159
Alignm identity: 121
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 38, 15

Conread position: 4-289
Cow position: chr15:23140147-23139890 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 209
Alignm E-value: 1e-28
Alignm gaps (pig, cow): 36, 14

Conread position: 12-288
Cow position: chr15:9928342-9928622 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 202
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 29, 132

Conread position: 15-199
Cow position: chr15:44879591-44879779 (view UCSC Genome Browser custom track)
Alignm length: 190
Alignm identity: 144
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 19, 131

Conread position: 15-222
Cow position: chr15:14758263-14758054 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 2e-35
Alignm gaps (pig, cow): 15, 65

Conread position: 15-269
Cow position: chr15:26933963-26933722 (view UCSC Genome Browser custom track)
Alignm length: 262
Alignm identity: 187
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 27, 139

Conread position: 15-279
Cow position: chr15:50993732-50993997 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 203
Alignm E-value: 9.99995e-41
Alignm gaps (pig, cow): 25, 66

Conread position: 15-288
Cow position: chr15:44252352-44252627 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 200
Alignm E-value: 3e-37
Alignm gaps (pig, cow): 50, 23

Conread position: 15-289
Cow position: chr15:26421611-26421331 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 27, 182

Conread position: 15-289
Cow position: chr15:43248791-43248506 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 208
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 22, 189

Conread position: 16-266
Cow position: chr15:16585499-16585756 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 199
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 122

Conread position: 17-220
Cow position: chr15:43130300-43130512 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 153
Alignm E-value: 3e-25
Alignm gaps (pig, cow): 20, 186

Conread position: 17-222
Cow position: chr15:40498305-40498098 (view UCSC Genome Browser custom track)
Alignm length: 213
Alignm identity: 161
Alignm E-value: 7e-34
Alignm gaps (pig, cow): 25, 171

Conread position: 17-279
Cow position: chr15:4373474-4373726 (view UCSC Genome Browser custom track)
Alignm length: 267
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 25, 82

Conread position: 17-290
Cow position: chr15:53045889-53045614 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 195
Alignm E-value: 8e-26
Alignm gaps (pig, cow): 15, 10

Conread position: 18-230
Cow position: chr15:29900541-29900325 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 158
Alignm E-value: 5e-32
Alignm gaps (pig, cow): 34, 188

Conread position: 22-289
Cow position: chr15:21836676-21836954 (view UCSC Genome Browser custom track)
Alignm length: 282
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 20, 103

Conread position: 23-276
Cow position: chr15:28236894-28236651 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 185
Alignm E-value: 6e-33
Alignm gaps (pig, cow): 59, 16

Conread position: 24-288
Cow position: chr15:27732410-27732662 (view UCSC Genome Browser custom track)
Alignm length: 271
Alignm identity: 208
Alignm E-value: 4.99983e-42
Alignm gaps (pig, cow): 41, 14

Conread position: 31-266
Cow position: chr15:26702071-26701836 (view UCSC Genome Browser custom track)
Alignm length: 242
Alignm identity: 171
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 11, 110

Conread position: 64-280
Cow position: chr15:33770655-33770873 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 173
Alignm E-value: 7.00649e-45
Alignm gaps (pig, cow): 79, 132

Conread position: 65-283
Cow position: chr15:2210614-2210833 (view UCSC Genome Browser custom track)
Alignm length: 226
Alignm identity: 163
Alignm E-value: 1e-27
Alignm gaps (pig, cow): 17, 60

Conread position: 66-241
Cow position: chr15:10815148-10814979 (view UCSC Genome Browser custom track)
Alignm length: 179
Alignm identity: 134
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 31, 44

Conread position: 68-280
Cow position: chr15:10615688-10615481 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 160
Alignm E-value: 2e-33
Alignm gaps (pig, cow): 14, 31

Conread position: 78-289
Cow position: chr15:36671985-36671769 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 177
Alignm E-value: 0
Alignm gaps (pig, cow): 49, 124

Conread position: 83-289
Cow position: chr15:40009593-40009385 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 147
Alignm E-value: 2e-22
Alignm gaps (pig, cow): 64, 121

Conread position: 86-274
Cow position: chr15:25111108-25110918 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 144
Alignm E-value: 3e-27
Alignm gaps (pig, cow): 56, 81

Conread position: 89-279
Cow position: chr15:5527247-5527439 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 153
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 56, 115

Conread position: 94-288
Cow position: chr15:51583297-51583488 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 147
Alignm E-value: 3e-26
Alignm gaps (pig, cow): 49, 94

Conread position: 158-289
Cow position: chr15:6282798-6282667 (view UCSC Genome Browser custom track)
Alignm length: 134
Alignm identity: 110
Alignm E-value: 3e-28
Alignm gaps (pig, cow): 22, 45

Conread position: 189-289
Cow position: chr15:22606974-22607072 (view UCSC Genome Browser custom track)
Alignm length: 102
Alignm identity: 87
Alignm E-value: 6e-22
Alignm gaps (pig, cow): 43, 63

Show alignments to all cow chromosomes.