Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-177 |
| Cow position: | chr16:28454177-28454354 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 135 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 1-178 |
| Cow position: | chr16:11662148-11661970 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 145 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 1-194 |
| Cow position: | chr16:16946422-16946621 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-194 |
| Cow position: | chr16:41711787-41711599 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-198 |
| Cow position: | chr16:44898640-44898834 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 153 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-199 |
| Cow position: | chr16:44580956-44581160 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 40, 20 |
| Conread position: | 1-226 |
| Cow position: | chr16:42312500-42312275 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 180 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 1-244 |
| Cow position: | chr16:12072750-12072508 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 187 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-249 |
| Cow position: | chr16:42257563-42257310 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 185 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-258 |
| Cow position: | chr16:47368873-47368616 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 199 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 43, 17 |
| Conread position: | 1-279 |
| Cow position: | chr16:20260589-20260326 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 218 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr16:21462139-21461866 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 198 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-279 |
| Cow position: | chr16:28266915-28267178 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 218 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-280 |
| Cow position: | chr16:23066770-23066498 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 212 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-284 |
| Cow position: | chr16:14974428-14974703 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 31, 18 |
| Conread position: | 1-284 |
| Cow position: | chr16:51069797-51070096 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 216 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-287 |
| Cow position: | chr16:19977079-19976794 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr16:4499544-4499260 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 228 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 1-288 |
| Cow position: | chr16:11085268-11085554 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 210 |
| Alignm E-value: | 7e-34 |
| Alignm gaps (pig, cow): | 48, 17 |
| Conread position: | 1-288 |
| Cow position: | chr16:18557148-18557440 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr16:3628910-3628640 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 217 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 45, 18 |
| Conread position: | 1-289 |
| Cow position: | chr16:18427299-18427008 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-289 |
| Cow position: | chr16:18949709-18949426 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr16:45693262-45692965 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-290 |
| Cow position: | chr16:10303635-10303924 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 227 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-290 |
| Cow position: | chr16:16546188-16545895 (view UCSC Genome Browser custom track) |
| Alignm length: | 303 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-290 |
| Cow position: | chr16:52577573-52577290 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 205 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-248 |
| Cow position: | chr16:26134253-26134504 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 186 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 34, 16 |
| Conread position: | 2-287 |
| Cow position: | chr16:54426278-54425986 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 8, 92 |
| Conread position: | 2-288 |
| Cow position: | chr16:4979920-4979638 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 224 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 17, 181 |
| Conread position: | 2-289 |
| Cow position: | chr16:15320369-15320646 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 217 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 2-289 |
| Cow position: | chr16:31973656-31973954 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 2-289 |
| Cow position: | chr16:40732317-40732042 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 218 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-290 |
| Cow position: | chr16:11008449-11008169 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 195 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 138, 17 |
| Conread position: | 3-180 |
| Cow position: | chr16:43082125-43082301 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 136 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 62, 9 |
| Conread position: | 3-265 |
| Cow position: | chr16:52222216-52222480 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-273 |
| Cow position: | chr16:22872266-22872527 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 208 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 3-275 |
| Cow position: | chr16:32837435-32837710 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-279 |
| Cow position: | chr16:38621069-38620796 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 210 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 42, 16 |
| Conread position: | 3-289 |
| Cow position: | chr16:20685346-20685614 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 39, 14 |
| Conread position: | 3-289 |
| Cow position: | chr16:31419560-31419268 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 219 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 4-238 |
| Cow position: | chr16:37719272-37719031 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 38, 9 |
| Conread position: | 4-289 |
| Cow position: | chr16:26156030-26156311 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 61, 14 |
| Conread position: | 12-284 |
| Cow position: | chr16:56445306-56445569 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 199 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 25, 80 |
| Conread position: | 15-167 |
| Cow position: | chr16:56104810-56104967 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 124 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 27, 14 |
| Conread position: | 15-276 |
| Cow position: | chr16:44722931-44723180 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 187 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 50, 23 |
| Conread position: | 15-289 |
| Cow position: | chr16:34210301-34210589 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.99756e-43 |
| Alignm gaps (pig, cow): | 27, 47 |
| Conread position: | 15-289 |
| Cow position: | chr16:37924074-37924344 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-32 |
| Alignm gaps (pig, cow): | 27, 119 |
| Conread position: | 15-290 |
| Cow position: | chr16:30639428-30639171 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 209 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 27, 52 |
| Conread position: | 16-271 |
| Cow position: | chr16:19002989-19003235 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 191 |
| Alignm E-value: | 1e-37 |
| Alignm gaps (pig, cow): | 26, 166 |
| Conread position: | 16-279 |
| Cow position: | chr16:12738418-12738167 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 199 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 27, 158 |
| Conread position: | 17-274 |
| Cow position: | chr16:53267824-53267565 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 199 |
| Alignm E-value: | 4e-38 |
| Alignm gaps (pig, cow): | 50, 22 |
| Conread position: | 18-241 |
| Cow position: | chr16:25127300-25127086 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 178 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 18-289 |
| Cow position: | chr16:11153091-11153365 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 190 |
| Conread position: | 20-272 |
| Cow position: | chr16:41608706-41608452 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 193 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 22, 52 |
| Conread position: | 20-288 |
| Cow position: | chr16:43505712-43505973 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 186 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 21, 77 |
| Conread position: | 25-290 |
| Cow position: | chr16:13611359-13611627 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 192 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 7, 137 |
| Conread position: | 26-279 |
| Cow position: | chr16:46627747-46628000 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 183 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 6, 67 |
| Conread position: | 32-275 |
| Cow position: | chr16:46253600-46253853 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 188 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 35, 124 |
| Conread position: | 34-288 |
| Cow position: | chr16:17606381-17606119 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 184 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 31, 130 |
| Conread position: | 39-228 |
| Cow position: | chr16:5789671-5789861 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 143 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 26, 109 |
| Conread position: | 39-288 |
| Cow position: | chr16:27013980-27013727 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 184 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 21, 152 |
| Conread position: | 40-249 |
| Cow position: | chr16:8704342-8704142 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 25, 72 |
| Conread position: | 41-289 |
| Cow position: | chr16:53547514-53547762 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 172 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 24, 101 |
| Conread position: | 51-288 |
| Cow position: | chr16:8236263-8236493 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 131, 13 |
| Conread position: | 58-275 |
| Cow position: | chr16:13792600-13792818 (view UCSC Genome Browser custom track) |
| Alignm length: | 226 |
| Alignm identity: | 174 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 31, 152 |
| Conread position: | 76-279 |
| Cow position: | chr16:18052135-18051928 (view UCSC Genome Browser custom track) |
| Alignm length: | 210 |
| Alignm identity: | 150 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 31, 53 |
| Conread position: | 78-289 |
| Cow position: | chr16:27005237-27005024 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 104, 54 |
| Conread position: | 82-199 |
| Cow position: | chr16:46435382-46435267 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 95 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 66, 29 |
| Conread position: | 82-215 |
| Cow position: | chr16:13027703-13027570 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 104 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 97, 59 |
| Conread position: | 82-288 |
| Cow position: | chr16:13601051-13601249 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 151 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 60, 28 |
| Conread position: | 83-290 |
| Cow position: | chr16:13791546-13791341 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 141 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 45, 67 |
| Conread position: | 88-279 |
| Cow position: | chr16:23990455-23990649 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 147 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 7, 109 |
| Conread position: | 91-280 |
| Cow position: | chr16:50113985-50113799 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 139 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 50, 102 |
| Conread position: | 97-290 |
| Cow position: | chr16:25463792-25463596 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 156 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 41, 13 |
| Conread position: | 106-276 |
| Cow position: | chr16:4875999-4875831 (view UCSC Genome Browser custom track) |
| Alignm length: | 174 |
| Alignm identity: | 141 |
| Alignm E-value: | 9e-36 |
| Alignm gaps (pig, cow): | 73, 31 |
| Conread position: | 112-249 |
| Cow position: | chr16:31490083-31489945 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 110 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 70, 19 |
| Conread position: | 115-279 |
| Cow position: | chr16:51995001-51994839 (view UCSC Genome Browser custom track) |
| Alignm length: | 168 |
| Alignm identity: | 130 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 110 |
| Conread position: | 130-276 |
| Cow position: | chr16:5243953-5243803 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 121 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 49, 73 |
| Conread position: | 131-280 |
| Cow position: | chr16:4763113-4762967 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 119 |
| Alignm E-value: | 7e-23 |
| Alignm gaps (pig, cow): | 47, 10 |
| Conread position: | 148-294 |
| Cow position: | chr16:28816129-28816275 (view UCSC Genome Browser custom track) |
| Alignm length: | 150 |
| Alignm identity: | 121 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 22, 54 |
| Conread position: | 153-290 |
| Cow position: | chr16:9845747-9845885 (view UCSC Genome Browser custom track) |
| Alignm length: | 141 |
| Alignm identity: | 111 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 29, 101 |
| Conread position: | 159-286 |
| Cow position: | chr16:32384867-32384993 (view UCSC Genome Browser custom track) |
| Alignm length: | 130 |
| Alignm identity: | 108 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 20, 43 |
Show alignments to all cow chromosomes.