Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-170 |
| Cow position: | chr17:38139664-38139490 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-188 |
| Cow position: | chr17:1455787-1455976 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 153 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-194 |
| Cow position: | chr17:5296702-5296899 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 149 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-198 |
| Cow position: | chr17:9748899-9748705 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 152 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-207 |
| Cow position: | chr17:13715879-13716092 (view UCSC Genome Browser custom track) |
| Alignm length: | 217 |
| Alignm identity: | 168 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-222 |
| Cow position: | chr17:5360298-5360502 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 1-230 |
| Cow position: | chr17:5985917-5986150 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-239 |
| Cow position: | chr17:27257063-27257318 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 197 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-240 |
| Cow position: | chr17:9059994-9060220 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 181 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-241 |
| Cow position: | chr17:15634730-15634965 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 183 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-259 |
| Cow position: | chr17:6569990-6570243 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 64, 32 |
| Conread position: | 1-265 |
| Cow position: | chr17:25340003-25340265 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-267 |
| Cow position: | chr17:10307878-10308142 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-271 |
| Cow position: | chr17:25741101-25740835 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 202 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-275 |
| Cow position: | chr17:20216322-20216048 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 1-275 |
| Cow position: | chr17:37414745-37415017 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr17:7614222-7614503 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 203 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-279 |
| Cow position: | chr17:25708111-25707834 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-279 |
| Cow position: | chr17:37138913-37138636 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 217 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 21 |
| Conread position: | 1-280 |
| Cow position: | chr17:21373829-21373555 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-287 |
| Cow position: | chr17:17452469-17452736 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 210 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-288 |
| Cow position: | chr17:23147574-23147294 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 212 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-289 |
| Cow position: | chr17:4140738-4141013 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 207 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 231, 17 |
| Conread position: | 1-289 |
| Cow position: | chr17:7595305-7595022 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 229 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr17:18173676-18173940 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 215 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-289 |
| Cow position: | chr17:26085177-26084899 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-290 |
| Cow position: | chr17:144025-144311 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 1-290 |
| Cow position: | chr17:10271646-10271360 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 232 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-294 |
| Cow position: | chr17:32457414-32457718 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 244 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-297 |
| Cow position: | chr17:35212511-35212223 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 219 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-304 |
| Cow position: | chr17:24880895-24880597 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 224 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 41, 21 |
| Conread position: | 2-229 |
| Cow position: | chr17:10015797-10016026 (view UCSC Genome Browser custom track) |
| Alignm length: | 234 |
| Alignm identity: | 163 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-245 |
| Cow position: | chr17:33903770-33904014 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 195 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 2-289 |
| Cow position: | chr17:34864722-34864437 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 3-127 |
| Cow position: | chr17:15922991-15922867 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-220 |
| Cow position: | chr17:4085909-4085689 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 177 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 121 |
| Conread position: | 3-267 |
| Cow position: | chr17:3042626-3042360 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 202 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 3-279 |
| Cow position: | chr17:36217032-36217306 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 206 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 71, 16 |
| Conread position: | 3-282 |
| Cow position: | chr17:32349221-32348946 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 189 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 28, 16 |
| Conread position: | 3-288 |
| Cow position: | chr17:19891778-19891481 (view UCSC Genome Browser custom track) |
| Alignm length: | 302 |
| Alignm identity: | 216 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-289 |
| Cow position: | chr17:8926065-8926355 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 3-289 |
| Cow position: | chr17:13671931-13672205 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 211 |
| Alignm E-value: | 8e-38 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-290 |
| Cow position: | chr17:10633890-10634193 (view UCSC Genome Browser custom track) |
| Alignm length: | 309 |
| Alignm identity: | 221 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-290 |
| Cow position: | chr17:25180997-25181280 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 4-173 |
| Cow position: | chr17:26614582-26614751 (view UCSC Genome Browser custom track) |
| Alignm length: | 173 |
| Alignm identity: | 137 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 4-248 |
| Cow position: | chr17:5787684-5787929 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 194 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 4-251 |
| Cow position: | chr17:41034082-41034328 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 181 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 4-290 |
| Cow position: | chr17:1094373-1094651 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 7-289 |
| Cow position: | chr17:11837552-11837287 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 36, 12 |
| Conread position: | 12-207 |
| Cow position: | chr17:8293634-8293835 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 147 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 30, 188 |
| Conread position: | 15-290 |
| Cow position: | chr17:41891918-41892199 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 197 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 15 |
| Conread position: | 16-289 |
| Cow position: | chr17:27697560-27697832 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 29, 36 |
| Conread position: | 17-271 |
| Cow position: | chr17:23803597-23803341 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 191 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 45, 28 |
| Conread position: | 18-181 |
| Cow position: | chr17:33154100-33153941 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 124 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 24, 125 |
| Conread position: | 20-290 |
| Cow position: | chr17:24077540-24077265 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 194 |
| Alignm E-value: | 5e-23 |
| Alignm gaps (pig, cow): | 12, 7 |
| Conread position: | 26-279 |
| Cow position: | chr17:21812019-21812270 (view UCSC Genome Browser custom track) |
| Alignm length: | 262 |
| Alignm identity: | 183 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 17, 97 |
| Conread position: | 31-271 |
| Cow position: | chr17:11215766-11216008 (view UCSC Genome Browser custom track) |
| Alignm length: | 248 |
| Alignm identity: | 171 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 39-279 |
| Cow position: | chr17:28359960-28359720 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-40 |
| Alignm gaps (pig, cow): | 26, 146 |
| Conread position: | 39-286 |
| Cow position: | chr17:18824905-18824658 (view UCSC Genome Browser custom track) |
| Alignm length: | 253 |
| Alignm identity: | 200 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 26, 91 |
| Conread position: | 39-288 |
| Cow position: | chr17:8279589-8279843 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 193 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 31, 78 |
| Conread position: | 40-279 |
| Cow position: | chr17:41811926-41811696 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 182 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 25, 103 |
| Conread position: | 47-279 |
| Cow position: | chr17:13989062-13989296 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 165 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 15, 160 |
| Conread position: | 50-253 |
| Cow position: | chr17:25145221-25145421 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 15, 75 |
| Conread position: | 58-230 |
| Cow position: | chr17:33930276-33930106 (view UCSC Genome Browser custom track) |
| Alignm length: | 176 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 19, 40 |
| Conread position: | 58-267 |
| Cow position: | chr17:10424174-10423970 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 81, 19 |
| Conread position: | 61-279 |
| Cow position: | chr17:18246172-18245952 (view UCSC Genome Browser custom track) |
| Alignm length: | 223 |
| Alignm identity: | 174 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 76, 135 |
| Conread position: | 64-288 |
| Cow position: | chr17:37778527-37778751 (view UCSC Genome Browser custom track) |
| Alignm length: | 233 |
| Alignm identity: | 182 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 25, 61 |
| Conread position: | 67-276 |
| Cow position: | chr17:3466913-3466710 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 153 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 73, 53 |
| Conread position: | 77-285 |
| Cow position: | chr17:42435567-42435763 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 150 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 100, 0 |
| Conread position: | 82-279 |
| Cow position: | chr17:23879751-23879947 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 32, 101 |
| Conread position: | 82-284 |
| Cow position: | chr17:37342417-37342612 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 100, 27 |
| Conread position: | 85-289 |
| Cow position: | chr17:2006761-2006568 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 53, 32 |
| Conread position: | 86-288 |
| Cow position: | chr17:33998985-33999178 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 154 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 93, 51 |
| Conread position: | 90-290 |
| Cow position: | chr17:24587686-24587487 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 144 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 91, 134 |
| Conread position: | 95-249 |
| Cow position: | chr17:18815276-18815123 (view UCSC Genome Browser custom track) |
| Alignm length: | 157 |
| Alignm identity: | 122 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 48, 62 |
| Conread position: | 109-288 |
| Cow position: | chr17:37776163-37775987 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 143 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 70, 47 |
| Conread position: | 111-289 |
| Cow position: | chr17:18494470-18494651 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 140 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 15, 94 |
| Conread position: | 113-244 |
| Cow position: | chr17:20608588-20608452 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 109 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 29, 91 |
| Conread position: | 114-289 |
| Cow position: | chr17:8861142-8861320 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 135 |
| Alignm E-value: | 9e-28 |
| Alignm gaps (pig, cow): | 117, 87 |
| Conread position: | 117-289 |
| Cow position: | chr17:7890136-7890314 (view UCSC Genome Browser custom track) |
| Alignm length: | 181 |
| Alignm identity: | 139 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 38, 25 |
| Conread position: | 127-288 |
| Cow position: | chr17:2079790-2079626 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 126 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 11, 70 |
| Conread position: | 131-290 |
| Cow position: | chr17:25755816-25755653 (view UCSC Genome Browser custom track) |
| Alignm length: | 167 |
| Alignm identity: | 133 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 48, 80 |
Show alignments to all cow chromosomes.