Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-173 |
| Cow position: | chr18:1190640-1190813 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 133 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 36, 18 |
| Conread position: | 1-174 |
| Cow position: | chr18:46873783-46873957 (view UCSC Genome Browser custom track) |
| Alignm length: | 180 |
| Alignm identity: | 133 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 53, 15 |
| Conread position: | 1-186 |
| Cow position: | chr18:37331447-37331634 (view UCSC Genome Browser custom track) |
| Alignm length: | 190 |
| Alignm identity: | 147 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-221 |
| Cow position: | chr18:43113866-43114086 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-229 |
| Cow position: | chr18:13789196-13789425 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 1-266 |
| Cow position: | chr18:32517271-32517546 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 208 |
| Alignm E-value: | 4.99997e-41 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr18:55696942-55697212 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-284 |
| Cow position: | chr18:23425000-23424722 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 209 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-288 |
| Cow position: | chr18:21575068-21574785 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 202 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-288 |
| Cow position: | chr18:25002808-25003083 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-288 |
| Cow position: | chr18:26334724-26335023 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 226 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 36, 15 |
| Conread position: | 1-288 |
| Cow position: | chr18:29796346-29796631 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 209 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 31, 11 |
| Conread position: | 1-289 |
| Cow position: | chr18:16134230-16134512 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 205 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 14 |
| Conread position: | 2-190 |
| Cow position: | chr18:11362330-11362140 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 141 |
| Alignm E-value: | 1e-27 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-207 |
| Cow position: | chr18:20422899-20423102 (view UCSC Genome Browser custom track) |
| Alignm length: | 211 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-35 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-241 |
| Cow position: | chr18:9154969-9154723 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 174 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 2-279 |
| Cow position: | chr18:305988-306258 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 186 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 51, 11 |
| Conread position: | 2-279 |
| Cow position: | chr18:10101568-10101294 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 215 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 10 |
| Conread position: | 2-288 |
| Cow position: | chr18:24855763-24856052 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 203 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 37, 16 |
| Conread position: | 2-288 |
| Cow position: | chr18:42061156-42060872 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 14 |
| Conread position: | 2-289 |
| Cow position: | chr18:6157994-6157714 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.99993e-41 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 2-290 |
| Cow position: | chr18:34324874-34325169 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 235 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 3-199 |
| Cow position: | chr18:32909128-32908928 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 155 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 62, 12 |
| Conread position: | 3-286 |
| Cow position: | chr18:35797699-35797419 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-288 |
| Cow position: | chr18:15831517-15831785 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 211 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 39, 8 |
| Conread position: | 3-289 |
| Cow position: | chr18:16726729-16726438 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 216 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 3-289 |
| Cow position: | chr18:19364013-19363723 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 229 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 3-308 |
| Cow position: | chr18:3780512-3780216 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 227 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 6-266 |
| Cow position: | chr18:46320905-46321171 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 36, 13 |
| Conread position: | 12-249 |
| Cow position: | chr18:23488094-23487856 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 187 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 31, 111 |
| Conread position: | 12-279 |
| Cow position: | chr18:23714810-23715083 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 30, 199 |
| Conread position: | 15-273 |
| Cow position: | chr18:38344876-38344613 (view UCSC Genome Browser custom track) |
| Alignm length: | 268 |
| Alignm identity: | 181 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 17, 12 |
| Conread position: | 15-276 |
| Cow position: | chr18:21681903-21682166 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 198 |
| Alignm E-value: | 6e-32 |
| Alignm gaps (pig, cow): | 27, 172 |
| Conread position: | 15-279 |
| Cow position: | chr18:35767239-35766994 (view UCSC Genome Browser custom track) |
| Alignm length: | 269 |
| Alignm identity: | 196 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 27, 68 |
| Conread position: | 15-280 |
| Cow position: | chr18:45961201-45961464 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 201 |
| Alignm E-value: | 9e-37 |
| Alignm gaps (pig, cow): | 24, 144 |
| Conread position: | 15-288 |
| Cow position: | chr18:51587474-51587752 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 27, 110 |
| Conread position: | 16-289 |
| Cow position: | chr18:4040238-4039970 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 26, 37 |
| Conread position: | 17-288 |
| Cow position: | chr18:32773946-32773671 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 210 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 36, 144 |
| Conread position: | 20-274 |
| Cow position: | chr18:21176252-21175993 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 196 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 22, 112 |
| Conread position: | 23-188 |
| Cow position: | chr18:34007012-34006841 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 127 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 42, 0 |
| Conread position: | 40-275 |
| Cow position: | chr18:28657867-28658104 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 171 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 13, 107 |
| Conread position: | 40-279 |
| Cow position: | chr18:36123578-36123339 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 183 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 25, 63 |
| Conread position: | 47-208 |
| Cow position: | chr18:14824740-14824899 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 122 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 18, 136 |
| Conread position: | 50-284 |
| Cow position: | chr18:21930314-21930541 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 15, 30 |
| Conread position: | 59-289 |
| Cow position: | chr18:219359-219124 (view UCSC Genome Browser custom track) |
| Alignm length: | 240 |
| Alignm identity: | 163 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 67, 101 |
| Conread position: | 64-288 |
| Cow position: | chr18:50993251-50993477 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 173 |
| Alignm E-value: | 5e-30 |
| Alignm gaps (pig, cow): | 25, 56 |
| Conread position: | 76-288 |
| Cow position: | chr18:21203267-21203466 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 149, 53 |
| Conread position: | 81-285 |
| Cow position: | chr18:23652623-23652819 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 98, 114 |
| Conread position: | 82-279 |
| Cow position: | chr18:36478199-36478001 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 60, 114 |
| Conread position: | 107-276 |
| Cow position: | chr18:35749007-35749172 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 2e-30 |
| Alignm gaps (pig, cow): | 120, 70 |
| Conread position: | 112-276 |
| Cow position: | chr18:50566842-50566678 (view UCSC Genome Browser custom track) |
| Alignm length: | 169 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-31 |
| Alignm gaps (pig, cow): | 30, 91 |
| Conread position: | 115-273 |
| Cow position: | chr18:51412334-51412181 (view UCSC Genome Browser custom track) |
| Alignm length: | 161 |
| Alignm identity: | 122 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 64, 26 |
| Conread position: | 128-275 |
| Cow position: | chr18:43463455-43463604 (view UCSC Genome Browser custom track) |
| Alignm length: | 152 |
| Alignm identity: | 120 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 49, 76 |
| Conread position: | 128-288 |
| Cow position: | chr18:23807919-23808080 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 127 |
| Alignm E-value: | 8e-25 |
| Alignm gaps (pig, cow): | 14, 93 |
Show alignments to all cow chromosomes.