Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-123 |
| Cow position: | chr19:2280541-2280662 (view UCSC Genome Browser custom track) |
| Alignm length: | 125 |
| Alignm identity: | 104 |
| Alignm E-value: | 9e-26 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-124 |
| Cow position: | chr19:14254627-14254751 (view UCSC Genome Browser custom track) |
| Alignm length: | 127 |
| Alignm identity: | 101 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-124 |
| Cow position: | chr19:36318409-36318286 (view UCSC Genome Browser custom track) |
| Alignm length: | 126 |
| Alignm identity: | 100 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-183 |
| Cow position: | chr19:30935670-30935865 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-206 |
| Cow position: | chr19:28842256-28842477 (view UCSC Genome Browser custom track) |
| Alignm length: | 224 |
| Alignm identity: | 160 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 1-216 |
| Cow position: | chr19:6735122-6735346 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 168 |
| Alignm E-value: | 6e-33 |
| Alignm gaps (pig, cow): | 42, 17 |
| Conread position: | 1-228 |
| Cow position: | chr19:11636838-11637051 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 177 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-273 |
| Cow position: | chr19:35064087-35064362 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-276 |
| Cow position: | chr19:19662148-19661872 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 28 |
| Conread position: | 1-279 |
| Cow position: | chr19:2770913-2771190 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 213 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-279 |
| Cow position: | chr19:6880772-6881051 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 216 |
| Alignm E-value: | 4e-39 |
| Alignm gaps (pig, cow): | 56, 16 |
| Conread position: | 1-279 |
| Cow position: | chr19:7838944-7839217 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-279 |
| Cow position: | chr19:22863565-22863835 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-279 |
| Cow position: | chr19:31380903-31381170 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr19:32214901-32214624 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 196 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-279 |
| Cow position: | chr19:35782038-35782306 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-280 |
| Cow position: | chr19:19673507-19673235 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-280 |
| Cow position: | chr19:27346557-27346821 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 204 |
| Alignm E-value: | 8e-36 |
| Alignm gaps (pig, cow): | 40, 18 |
| Conread position: | 1-284 |
| Cow position: | chr19:2342582-2342299 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-284 |
| Cow position: | chr19:9100251-9099977 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 212 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-287 |
| Cow position: | chr19:38907256-38907540 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 203 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 62, 18 |
| Conread position: | 1-288 |
| Cow position: | chr19:35345032-35344751 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 208 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-289 |
| Cow position: | chr19:25711223-25711517 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 224 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 41, 9 |
| Conread position: | 1-290 |
| Cow position: | chr19:905068-904804 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 211 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 141, 17 |
| Conread position: | 1-294 |
| Cow position: | chr19:21284977-21285275 (view UCSC Genome Browser custom track) |
| Alignm length: | 307 |
| Alignm identity: | 240 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-139 |
| Cow position: | chr19:21091197-21091060 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 113 |
| Alignm E-value: | 4e-28 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-279 |
| Cow position: | chr19:25271316-25271593 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-289 |
| Cow position: | chr19:36461425-36461714 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 237 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 2-289 |
| Cow position: | chr19:48479080-48478787 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 234 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 35, 16 |
| Conread position: | 3-190 |
| Cow position: | chr19:952791-952603 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 148 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-273 |
| Cow position: | chr19:24689383-24689114 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 200 |
| Alignm E-value: | 3e-36 |
| Alignm gaps (pig, cow): | 62, 30 |
| Conread position: | 3-273 |
| Cow position: | chr19:31827192-31826930 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 3-276 |
| Cow position: | chr19:15936935-15936668 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 210 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 12 |
| Conread position: | 3-289 |
| Cow position: | chr19:36976810-36977103 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 224 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-289 |
| Cow position: | chr19:53738436-53738148 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 231 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 15 |
| Conread position: | 3-289 |
| Cow position: | chr19:54225207-54225485 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 212 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 3-290 |
| Cow position: | chr19:2821684-2821395 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 62, 15 |
| Conread position: | 14-291 |
| Cow position: | chr19:48960487-48960206 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 192 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 15-284 |
| Cow position: | chr19:31614197-31613933 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 212 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 27, 8 |
| Conread position: | 18-290 |
| Cow position: | chr19:19924516-19924787 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 47, 20 |
| Conread position: | 21-199 |
| Cow position: | chr19:24721768-24721578 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 139 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 20, 0 |
| Conread position: | 24-234 |
| Cow position: | chr19:42504703-42504906 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 158 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 18, 105 |
| Conread position: | 28-267 |
| Cow position: | chr19:43733812-43733586 (view UCSC Genome Browser custom track) |
| Alignm length: | 243 |
| Alignm identity: | 179 |
| Alignm E-value: | 5e-31 |
| Alignm gaps (pig, cow): | 14, 31 |
| Conread position: | 29-276 |
| Cow position: | chr19:51536637-51536393 (view UCSC Genome Browser custom track) |
| Alignm length: | 254 |
| Alignm identity: | 185 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 13, 52 |
| Conread position: | 29-289 |
| Cow position: | chr19:3084128-3084395 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 184 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 10, 172 |
| Conread position: | 31-290 |
| Cow position: | chr19:47479552-47479805 (view UCSC Genome Browser custom track) |
| Alignm length: | 265 |
| Alignm identity: | 197 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 34, 108 |
| Conread position: | 41-247 |
| Cow position: | chr19:42273785-42273993 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 12, 112 |
| Conread position: | 42-279 |
| Cow position: | chr19:44490157-44489918 (view UCSC Genome Browser custom track) |
| Alignm length: | 242 |
| Alignm identity: | 186 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 24, 153 |
| Conread position: | 58-289 |
| Cow position: | chr19:18788062-18788291 (view UCSC Genome Browser custom track) |
| Alignm length: | 236 |
| Alignm identity: | 187 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 7, 12 |
| Conread position: | 64-288 |
| Cow position: | chr19:35380512-35380735 (view UCSC Genome Browser custom track) |
| Alignm length: | 231 |
| Alignm identity: | 163 |
| Alignm E-value: | 3e-26 |
| Alignm gaps (pig, cow): | 25, 81 |
| Conread position: | 65-289 |
| Cow position: | chr19:44367062-44366840 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 170 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 21, 96 |
| Conread position: | 74-289 |
| Cow position: | chr19:28921853-28921636 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 167 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 71, 130 |
| Conread position: | 82-263 |
| Cow position: | chr19:33674316-33674489 (view UCSC Genome Browser custom track) |
| Alignm length: | 185 |
| Alignm identity: | 140 |
| Alignm E-value: | 3e-25 |
| Alignm gaps (pig, cow): | 57, 29 |
| Conread position: | 82-279 |
| Cow position: | chr19:2260111-2260298 (view UCSC Genome Browser custom track) |
| Alignm length: | 202 |
| Alignm identity: | 151 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 49, 60 |
| Conread position: | 82-289 |
| Cow position: | chr19:30746426-30746214 (view UCSC Genome Browser custom track) |
| Alignm length: | 215 |
| Alignm identity: | 147 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 62, 114 |
| Conread position: | 85-249 |
| Cow position: | chr19:23327771-23327929 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 128 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 147, 64 |
| Conread position: | 85-279 |
| Cow position: | chr19:33306326-33306131 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 8e-35 |
| Alignm gaps (pig, cow): | 97, 118 |
| Conread position: | 85-289 |
| Cow position: | chr19:33882156-33882347 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 148 |
| Alignm E-value: | 7e-24 |
| Alignm gaps (pig, cow): | 37, 0 |
| Conread position: | 88-289 |
| Cow position: | chr19:1968293-1968491 (view UCSC Genome Browser custom track) |
| Alignm length: | 206 |
| Alignm identity: | 146 |
| Alignm E-value: | 6e-22 |
| Alignm gaps (pig, cow): | 93, 65 |
| Conread position: | 96-288 |
| Cow position: | chr19:18242419-18242607 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 140 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 37, 101 |
| Conread position: | 97-279 |
| Cow position: | chr19:30276938-30276766 (view UCSC Genome Browser custom track) |
| Alignm length: | 184 |
| Alignm identity: | 134 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 78, 53 |
| Conread position: | 114-276 |
| Cow position: | chr19:56018536-56018697 (view UCSC Genome Browser custom track) |
| Alignm length: | 164 |
| Alignm identity: | 123 |
| Alignm E-value: | 1e-26 |
| Alignm gaps (pig, cow): | 113, 78 |
| Conread position: | 150-279 |
| Cow position: | chr19:25637544-25637673 (view UCSC Genome Browser custom track) |
| Alignm length: | 133 |
| Alignm identity: | 106 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 31, 46 |
Show alignments to all cow chromosomes.