Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-127
Cow position: chr2:61442711-61442585 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 41, 17

Conread position: 1-127
Cow position: chr2:72584036-72583910 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 102
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 41, 16

Conread position: 1-140
Cow position: chr2:21955249-21955110 (view UCSC Genome Browser custom track)
Alignm length: 142
Alignm identity: 107
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 41, 18

Conread position: 1-151
Cow position: chr2:77982032-77982182 (view UCSC Genome Browser custom track)
Alignm length: 154
Alignm identity: 124
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 41, 18

Conread position: 1-153
Cow position: chr2:25084803-25084646 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 123
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 41, 18

Conread position: 1-170
Cow position: chr2:13466148-13465978 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 131
Alignm E-value: 2e-28
Alignm gaps (pig, cow): 41, 17

Conread position: 1-170
Cow position: chr2:36294940-36294769 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 20, 39

Conread position: 1-180
Cow position: chr2:41765602-41765423 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 140
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 64, 11

Conread position: 1-206
Cow position: chr2:2937675-2937479 (view UCSC Genome Browser custom track)
Alignm length: 208
Alignm identity: 161
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 41, 13

Conread position: 1-207
Cow position: chr2:31113954-31113753 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 159
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 41, 17

Conread position: 1-249
Cow position: chr2:82054730-82054979 (view UCSC Genome Browser custom track)
Alignm length: 257
Alignm identity: 200
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 18

Conread position: 1-269
Cow position: chr2:62309317-62309582 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 18

Conread position: 1-274
Cow position: chr2:7498690-7498422 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 223
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-275
Cow position: chr2:469751-469494 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 211
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 41, 18

Conread position: 1-276
Cow position: chr2:7720798-7721068 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 1-279
Cow position: chr2:6444142-6443862 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr2:14099764-14099482 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 222
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-279
Cow position: chr2:34256188-34256461 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 8.00001e-42
Alignm gaps (pig, cow): 64, 18

Conread position: 1-279
Cow position: chr2:43773470-43773742 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 213
Alignm E-value: 0
Alignm gaps (pig, cow): 64, 34

Conread position: 1-279
Cow position: chr2:49480479-49480755 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 215
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 1-279
Cow position: chr2:68842825-68843107 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 17

Conread position: 1-279
Cow position: chr2:70579588-70579874 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 215
Alignm E-value: 2.99878e-43
Alignm gaps (pig, cow): 41, 23

Conread position: 1-285
Cow position: chr2:69047134-69046866 (view UCSC Genome Browser custom track)
Alignm length: 288
Alignm identity: 201
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 39, 17

Conread position: 1-288
Cow position: chr2:793761-793475 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 216
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 41, 18

Conread position: 1-288
Cow position: chr2:31155823-31155542 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 215
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 41, 15

Conread position: 1-288
Cow position: chr2:41314009-41313714 (view UCSC Genome Browser custom track)
Alignm length: 301
Alignm identity: 217
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr2:27612916-27613197 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 227
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 17

Conread position: 1-289
Cow position: chr2:33659586-33659879 (view UCSC Genome Browser custom track)
Alignm length: 300
Alignm identity: 212
Alignm E-value: 4e-36
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr2:42309440-42309733 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr2:50400530-50400246 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 231
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 1-289
Cow position: chr2:50606653-50606374 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 213
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 41, 17

Conread position: 1-320
Cow position: chr2:58685497-58685179 (view UCSC Genome Browser custom track)
Alignm length: 329
Alignm identity: 243
Alignm E-value: 0
Alignm gaps (pig, cow): 41, 17

Conread position: 2-273
Cow position: chr2:45726296-45726029 (view UCSC Genome Browser custom track)
Alignm length: 276
Alignm identity: 205
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 43, 16

Conread position: 2-274
Cow position: chr2:11697240-11696973 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 40, 18

Conread position: 2-276
Cow position: chr2:6056084-6055809 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 198
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 40, 13

Conread position: 2-279
Cow position: chr2:32453417-32453677 (view UCSC Genome Browser custom track)
Alignm length: 286
Alignm identity: 217
Alignm E-value: 6e-39
Alignm gaps (pig, cow): 63, 16

Conread position: 2-284
Cow position: chr2:29382564-29382844 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 34, 16

Conread position: 2-286
Cow position: chr2:26042126-26042413 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 219
Alignm E-value: 9.80909e-45
Alignm gaps (pig, cow): 40, 16

Conread position: 2-289
Cow position: chr2:40427683-40427978 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 229
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 2-290
Cow position: chr2:38377016-38376719 (view UCSC Genome Browser custom track)
Alignm length: 302
Alignm identity: 219
Alignm E-value: 3.00018e-42
Alignm gaps (pig, cow): 40, 16

Conread position: 3-180
Cow position: chr2:15162858-15162676 (view UCSC Genome Browser custom track)
Alignm length: 184
Alignm identity: 139
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 62, 12

Conread position: 3-232
Cow position: chr2:73999838-73999605 (view UCSC Genome Browser custom track)
Alignm length: 241
Alignm identity: 174
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 38, 15

Conread position: 3-248
Cow position: chr2:40791281-40791045 (view UCSC Genome Browser custom track)
Alignm length: 249
Alignm identity: 174
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 37, 15

Conread position: 3-248
Cow position: chr2:59380382-59380619 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 192
Alignm E-value: 0
Alignm gaps (pig, cow): 176, 15

Conread position: 3-275
Cow position: chr2:70752909-70752635 (view UCSC Genome Browser custom track)
Alignm length: 279
Alignm identity: 221
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-277
Cow position: chr2:18637002-18636735 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 39, 16

Conread position: 3-279
Cow position: chr2:1651513-1651242 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 209
Alignm E-value: 2e-39
Alignm gaps (pig, cow): 62, 14

Conread position: 3-288
Cow position: chr2:425928-425644 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 216
Alignm E-value: 1e-36
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr2:10356564-10356852 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 233
Alignm E-value: 0
Alignm gaps (pig, cow): 62, 16

Conread position: 3-289
Cow position: chr2:40492471-40492194 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 214
Alignm E-value: 7e-40
Alignm gaps (pig, cow): 39, 16

Conread position: 3-289
Cow position: chr2:76822145-76822425 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 217
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 39, 15

Conread position: 3-292
Cow position: chr2:21183259-21182986 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 215
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 42, 14

Conread position: 4-139
Cow position: chr2:39912489-39912620 (view UCSC Genome Browser custom track)
Alignm length: 137
Alignm identity: 106
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 38, 11

Conread position: 4-252
Cow position: chr2:39832502-39832265 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 188
Alignm E-value: 1e-35
Alignm gaps (pig, cow): 38, 11

Conread position: 4-289
Cow position: chr2:66779751-66780031 (view UCSC Genome Browser custom track)
Alignm length: 293
Alignm identity: 213
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 38, 13

Conread position: 6-241
Cow position: chr2:1918192-1918427 (view UCSC Genome Browser custom track)
Alignm length: 240
Alignm identity: 122
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 93, 132

Conread position: 10-289
Cow position: chr2:45666141-45665856 (view UCSC Genome Browser custom track)
Alignm length: 291
Alignm identity: 195
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 30, 21

Conread position: 12-286
Cow position: chr2:20868172-20868431 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 200
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 31, 75

Conread position: 13-212
Cow position: chr2:53496808-53497010 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 147
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 29, 11

Conread position: 13-279
Cow position: chr2:31457599-31457325 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 195
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 28, 193

Conread position: 13-288
Cow position: chr2:15769401-15769663 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 2e-38
Alignm gaps (pig, cow): 29, 113

Conread position: 14-279
Cow position: chr2:46741593-46741315 (view UCSC Genome Browser custom track)
Alignm length: 283
Alignm identity: 193
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 14, 192

Conread position: 15-170
Cow position: chr2:73794165-73794320 (view UCSC Genome Browser custom track)
Alignm length: 157
Alignm identity: 121
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 51, 153

Conread position: 15-279
Cow position: chr2:30640299-30640027 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 193
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 27, 191

Conread position: 15-288
Cow position: chr2:39855888-39855615 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 216
Alignm E-value: 0
Alignm gaps (pig, cow): 51, 20

Conread position: 16-166
Cow position: chr2:13750312-13750159 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 116
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 26, 35

Conread position: 16-178
Cow position: chr2:39802208-39802376 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 128
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 26, 110

Conread position: 16-208
Cow position: chr2:39672645-39672848 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 145
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 25, 0

Conread position: 17-188
Cow position: chr2:31558467-31558294 (view UCSC Genome Browser custom track)
Alignm length: 175
Alignm identity: 132
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 25, 113

Conread position: 17-194
Cow position: chr2:7947041-7947226 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 137
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 25, 0

Conread position: 17-288
Cow position: chr2:14555650-14555925 (view UCSC Genome Browser custom track)
Alignm length: 281
Alignm identity: 198
Alignm E-value: 3e-32
Alignm gaps (pig, cow): 15, 10

Conread position: 17-289
Cow position: chr2:74209236-74209501 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 206
Alignm E-value: 5e-38
Alignm gaps (pig, cow): 48, 21

Conread position: 18-185
Cow position: chr2:68655408-68655239 (view UCSC Genome Browser custom track)
Alignm length: 170
Alignm identity: 125
Alignm E-value: 2e-26
Alignm gaps (pig, cow): 24, 0

Conread position: 21-289
Cow position: chr2:32393511-32393238 (view UCSC Genome Browser custom track)
Alignm length: 280
Alignm identity: 189
Alignm E-value: 1e-23
Alignm gaps (pig, cow): 18, 102

Conread position: 24-190
Cow position: chr2:12198814-12198984 (view UCSC Genome Browser custom track)
Alignm length: 173
Alignm identity: 130
Alignm E-value: 4e-25
Alignm gaps (pig, cow): 18, 134

Conread position: 24-198
Cow position: chr2:4796846-4796665 (view UCSC Genome Browser custom track)
Alignm length: 182
Alignm identity: 130
Alignm E-value: 3e-21
Alignm gaps (pig, cow): 18, 0

Conread position: 24-271
Cow position: chr2:70945500-70945248 (view UCSC Genome Browser custom track)
Alignm length: 259
Alignm identity: 178
Alignm E-value: 1e-22
Alignm gaps (pig, cow): 8, 177

Conread position: 24-279
Cow position: chr2:2740555-2740300 (view UCSC Genome Browser custom track)
Alignm length: 264
Alignm identity: 201
Alignm E-value: 8.99634e-43
Alignm gaps (pig, cow): 18, 27

Conread position: 24-279
Cow position: chr2:40836079-40836324 (view UCSC Genome Browser custom track)
Alignm length: 258
Alignm identity: 184
Alignm E-value: 9e-32
Alignm gaps (pig, cow): 17, 57

Conread position: 26-162
Cow position: chr2:33259393-33259253 (view UCSC Genome Browser custom track)
Alignm length: 141
Alignm identity: 114
Alignm E-value: 6e-28
Alignm gaps (pig, cow): 16, 0

Conread position: 26-270
Cow position: chr2:61950605-61950367 (view UCSC Genome Browser custom track)
Alignm length: 250
Alignm identity: 182
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 16, 55

Conread position: 28-289
Cow position: chr2:43718993-43718740 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 187
Alignm E-value: 1e-25
Alignm gaps (pig, cow): 37, 156

Conread position: 31-288
Cow position: chr2:39787109-39786848 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 184
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 11, 125

Conread position: 34-186
Cow position: chr2:73386762-73386922 (view UCSC Genome Browser custom track)
Alignm length: 161
Alignm identity: 122
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 31, 0

Conread position: 39-279
Cow position: chr2:62818627-62818878 (view UCSC Genome Browser custom track)
Alignm length: 255
Alignm identity: 187
Alignm E-value: 3e-34
Alignm gaps (pig, cow): 12, 163

Conread position: 39-284
Cow position: chr2:2382479-2382729 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 196
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 161

Conread position: 64-279
Cow position: chr2:46175208-46175420 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 156
Alignm E-value: 4e-24
Alignm gaps (pig, cow): 21, 81

Conread position: 64-289
Cow position: chr2:80595262-80595488 (view UCSC Genome Browser custom track)
Alignm length: 229
Alignm identity: 186
Alignm E-value: 0
Alignm gaps (pig, cow): 77, 131

Conread position: 72-280
Cow position: chr2:80800749-80800536 (view UCSC Genome Browser custom track)
Alignm length: 221
Alignm identity: 169
Alignm E-value: 3e-31
Alignm gaps (pig, cow): 43, 112

Conread position: 73-273
Cow position: chr2:60182269-60182468 (view UCSC Genome Browser custom track)
Alignm length: 206
Alignm identity: 153
Alignm E-value: 2e-29
Alignm gaps (pig, cow): 59, 8

Conread position: 76-287
Cow position: chr2:29612588-29612391 (view UCSC Genome Browser custom track)
Alignm length: 214
Alignm identity: 160
Alignm E-value: 5e-26
Alignm gaps (pig, cow): 23, 9

Conread position: 78-279
Cow position: chr2:63865291-63865493 (view UCSC Genome Browser custom track)
Alignm length: 205
Alignm identity: 160
Alignm E-value: 7.00005e-41
Alignm gaps (pig, cow): 103, 125

Conread position: 85-279
Cow position: chr2:46033362-46033167 (view UCSC Genome Browser custom track)
Alignm length: 200
Alignm identity: 140
Alignm E-value: 8e-21
Alignm gaps (pig, cow): 57, 138

Conread position: 85-280
Cow position: chr2:23847798-23847991 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 137
Alignm E-value: 3e-23
Alignm gaps (pig, cow): 142, 107

Conread position: 94-276
Cow position: chr2:72687977-72688158 (view UCSC Genome Browser custom track)
Alignm length: 186
Alignm identity: 141
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 12, 38

Conread position: 97-248
Cow position: chr2:945017-944869 (view UCSC Genome Browser custom track)
Alignm length: 153
Alignm identity: 114
Alignm E-value: 9e-22
Alignm gaps (pig, cow): 135, 16

Conread position: 98-289
Cow position: chr2:36007572-36007760 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 142
Alignm E-value: 1e-24
Alignm gaps (pig, cow): 82, 52

Conread position: 106-275
Cow position: chr2:73069733-73069561 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 136
Alignm E-value: 9e-33
Alignm gaps (pig, cow): 70, 149

Conread position: 115-289
Cow position: chr2:17341574-17341398 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 138
Alignm E-value: 7e-30
Alignm gaps (pig, cow): 67, 28

Conread position: 115-289
Cow position: chr2:66796887-66797067 (view UCSC Genome Browser custom track)
Alignm length: 183
Alignm identity: 137
Alignm E-value: 5e-27
Alignm gaps (pig, cow): 64, 90

Conread position: 119-276
Cow position: chr2:18889388-18889547 (view UCSC Genome Browser custom track)
Alignm length: 162
Alignm identity: 127
Alignm E-value: 6e-29
Alignm gaps (pig, cow): 19, 77

Conread position: 131-249
Cow position: chr2:63658070-63657951 (view UCSC Genome Browser custom track)
Alignm length: 124
Alignm identity: 103
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 12, 20

Conread position: 132-244
Cow position: chr2:56762073-56761963 (view UCSC Genome Browser custom track)
Alignm length: 114
Alignm identity: 94
Alignm E-value: 3e-22
Alignm gaps (pig, cow): 48, 27

Show alignments to all cow chromosomes.