Cow genome map

Conread name: Ss1.1-Ova1-OVRM10069H08.5

Conread position: 1-107
Cow position: chr20:35683248-35683354 (view UCSC Genome Browser custom track)
Alignm length: 109
Alignm identity: 90
Alignm E-value: 4e-21
Alignm gaps (pig, cow): 41, 17

Conread position: 1-127
Cow position: chr20:2456186-2456060 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 103
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 42, 17

Conread position: 1-148
Cow position: chr20:13608911-13609058 (view UCSC Genome Browser custom track)
Alignm length: 150
Alignm identity: 113
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 41, 18

Conread position: 1-176
Cow position: chr20:32668128-32667955 (view UCSC Genome Browser custom track)
Alignm length: 180
Alignm identity: 137
Alignm E-value: 7e-27
Alignm gaps (pig, cow): 41, 16

Conread position: 1-180
Cow position: chr20:5763136-5763320 (view UCSC Genome Browser custom track)
Alignm length: 187
Alignm identity: 139
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 41, 18

Conread position: 1-194
Cow position: chr20:19865405-19865214 (view UCSC Genome Browser custom track)
Alignm length: 198
Alignm identity: 157
Alignm E-value: 2e-37
Alignm gaps (pig, cow): 38, 13

Conread position: 1-195
Cow position: chr20:26750056-26750247 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 151
Alignm E-value: 1e-31
Alignm gaps (pig, cow): 41, 14

Conread position: 1-199
Cow position: chr20:7526882-7527075 (view UCSC Genome Browser custom track)
Alignm length: 202
Alignm identity: 145
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 64, 18

Conread position: 1-240
Cow position: chr20:1205779-1206018 (view UCSC Genome Browser custom track)
Alignm length: 248
Alignm identity: 172
Alignm E-value: 5e-24
Alignm gaps (pig, cow): 41, 17

Conread position: 1-265
Cow position: chr20:19339723-19339982 (view UCSC Genome Browser custom track)
Alignm length: 269
Alignm identity: 203
Alignm E-value: 1.4013e-45
Alignm gaps (pig, cow): 41, 18

Conread position: 1-284
Cow position: chr20:10838054-10838345 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 211
Alignm E-value: 8e-38
Alignm gaps (pig, cow): 41, 17

Conread position: 1-288
Cow position: chr20:4204443-4204160 (view UCSC Genome Browser custom track)
Alignm length: 295
Alignm identity: 210
Alignm E-value: 6e-36
Alignm gaps (pig, cow): 64, 23

Conread position: 1-288
Cow position: chr20:20359624-20359909 (view UCSC Genome Browser custom track)
Alignm length: 297
Alignm identity: 211
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 42, 17

Conread position: 1-288
Cow position: chr20:38858275-38858540 (view UCSC Genome Browser custom track)
Alignm length: 289
Alignm identity: 214
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 226, 17

Conread position: 1-289
Cow position: chr20:220766-220483 (view UCSC Genome Browser custom track)
Alignm length: 298
Alignm identity: 223
Alignm E-value: 5.04467e-44
Alignm gaps (pig, cow): 41, 16

Conread position: 1-289
Cow position: chr20:7182529-7182809 (view UCSC Genome Browser custom track)
Alignm length: 294
Alignm identity: 216
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 41, 17

Conread position: 2-288
Cow position: chr20:26077239-26076952 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 214
Alignm E-value: 1e-39
Alignm gaps (pig, cow): 40, 20

Conread position: 2-288
Cow position: chr20:40511601-40511890 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 204
Alignm E-value: 2e-25
Alignm gaps (pig, cow): 31, 9

Conread position: 2-289
Cow position: chr20:34178321-34178610 (view UCSC Genome Browser custom track)
Alignm length: 299
Alignm identity: 228
Alignm E-value: 0
Alignm gaps (pig, cow): 40, 16

Conread position: 3-212
Cow position: chr20:25274137-25274346 (view UCSC Genome Browser custom track)
Alignm length: 218
Alignm identity: 168
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 39, 15

Conread position: 3-274
Cow position: chr20:23235186-23234917 (view UCSC Genome Browser custom track)
Alignm length: 277
Alignm identity: 209
Alignm E-value: 0
Alignm gaps (pig, cow): 37, 15

Conread position: 3-279
Cow position: chr20:8262072-8261788 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 218
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 37, 16

Conread position: 3-279
Cow position: chr20:17670339-17670063 (view UCSC Genome Browser custom track)
Alignm length: 284
Alignm identity: 208
Alignm E-value: 1.00053e-42
Alignm gaps (pig, cow): 39, 16

Conread position: 3-279
Cow position: chr20:25823433-25823159 (view UCSC Genome Browser custom track)
Alignm length: 285
Alignm identity: 210
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 39, 12

Conread position: 3-279
Cow position: chr20:33178362-33178643 (view UCSC Genome Browser custom track)
Alignm length: 287
Alignm identity: 206
Alignm E-value: 3e-38
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr20:14679773-14679485 (view UCSC Genome Browser custom track)
Alignm length: 296
Alignm identity: 230
Alignm E-value: 0
Alignm gaps (pig, cow): 39, 15

Conread position: 3-289
Cow position: chr20:27001542-27001264 (view UCSC Genome Browser custom track)
Alignm length: 292
Alignm identity: 219
Alignm E-value: 0
Alignm gaps (pig, cow): 38, 15

Conread position: 4-185
Cow position: chr20:14362992-14363166 (view UCSC Genome Browser custom track)
Alignm length: 185
Alignm identity: 138
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 38, 11

Conread position: 4-220
Cow position: chr20:42255016-42254794 (view UCSC Genome Browser custom track)
Alignm length: 224
Alignm identity: 154
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 38, 11

Conread position: 4-232
Cow position: chr20:30855604-30855831 (view UCSC Genome Browser custom track)
Alignm length: 234
Alignm identity: 171
Alignm E-value: 1e-32
Alignm gaps (pig, cow): 35, 11

Conread position: 5-289
Cow position: chr20:26880745-26881047 (view UCSC Genome Browser custom track)
Alignm length: 307
Alignm identity: 227
Alignm E-value: 9.94922e-44
Alignm gaps (pig, cow): 37, 14

Conread position: 12-279
Cow position: chr20:19266302-19266038 (view UCSC Genome Browser custom track)
Alignm length: 273
Alignm identity: 193
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 30, 180

Conread position: 15-195
Cow position: chr20:4933924-4934101 (view UCSC Genome Browser custom track)
Alignm length: 188
Alignm identity: 140
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 27, 107

Conread position: 15-269
Cow position: chr20:12676575-12676331 (view UCSC Genome Browser custom track)
Alignm length: 260
Alignm identity: 191
Alignm E-value: 2e-34
Alignm gaps (pig, cow): 25, 14

Conread position: 15-279
Cow position: chr20:25686202-25686471 (view UCSC Genome Browser custom track)
Alignm length: 274
Alignm identity: 192
Alignm E-value: 4e-32
Alignm gaps (pig, cow): 27, 102

Conread position: 23-288
Cow position: chr20:20471921-20471655 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 205
Alignm E-value: 7e-37
Alignm gaps (pig, cow): 19, 178

Conread position: 26-288
Cow position: chr20:5576910-5576634 (view UCSC Genome Browser custom track)
Alignm length: 278
Alignm identity: 192
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 16, 238

Conread position: 39-284
Cow position: chr20:38124008-38123762 (view UCSC Genome Browser custom track)
Alignm length: 253
Alignm identity: 191
Alignm E-value: 3.99931e-42
Alignm gaps (pig, cow): 26, 102

Conread position: 39-289
Cow position: chr20:24234275-24234027 (view UCSC Genome Browser custom track)
Alignm length: 256
Alignm identity: 197
Alignm E-value: 0
Alignm gaps (pig, cow): 26, 132

Conread position: 56-254
Cow position: chr20:2801991-2802190 (view UCSC Genome Browser custom track)
Alignm length: 204
Alignm identity: 151
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 9, 147

Conread position: 78-249
Cow position: chr20:26315519-26315684 (view UCSC Genome Browser custom track)
Alignm length: 174
Alignm identity: 135
Alignm E-value: 3e-29
Alignm gaps (pig, cow): 56, 98

Conread position: 82-279
Cow position: chr20:24868959-24869147 (view UCSC Genome Browser custom track)
Alignm length: 199
Alignm identity: 142
Alignm E-value: 5e-23
Alignm gaps (pig, cow): 57, 101

Conread position: 82-289
Cow position: chr20:32577845-32578053 (view UCSC Genome Browser custom track)
Alignm length: 215
Alignm identity: 157
Alignm E-value: 2e-27
Alignm gaps (pig, cow): 53, 127

Conread position: 86-288
Cow position: chr20:6571404-6571200 (view UCSC Genome Browser custom track)
Alignm length: 211
Alignm identity: 150
Alignm E-value: 4e-22
Alignm gaps (pig, cow): 52, 115

Conread position: 101-289
Cow position: chr20:14831559-14831745 (view UCSC Genome Browser custom track)
Alignm length: 189
Alignm identity: 143
Alignm E-value: 6e-35
Alignm gaps (pig, cow): 91, 0

Conread position: 101-294
Cow position: chr20:14865120-14865314 (view UCSC Genome Browser custom track)
Alignm length: 197
Alignm identity: 136
Alignm E-value: 1e-21
Alignm gaps (pig, cow): 46, 102

Conread position: 101-308
Cow position: chr20:11355273-11355069 (view UCSC Genome Browser custom track)
Alignm length: 212
Alignm identity: 158
Alignm E-value: 3e-30
Alignm gaps (pig, cow): 78, 102

Conread position: 102-288
Cow position: chr20:13956099-13955907 (view UCSC Genome Browser custom track)
Alignm length: 195
Alignm identity: 140
Alignm E-value: 2e-24
Alignm gaps (pig, cow): 80, 98

Conread position: 112-280
Cow position: chr20:37609275-37609107 (view UCSC Genome Browser custom track)
Alignm length: 172
Alignm identity: 130
Alignm E-value: 8e-28
Alignm gaps (pig, cow): 69, 99

Conread position: 123-276
Cow position: chr20:6045397-6045541 (view UCSC Genome Browser custom track)
Alignm length: 155
Alignm identity: 121
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 19, 71

Conread position: 126-252
Cow position: chr20:15918013-15917885 (view UCSC Genome Browser custom track)
Alignm length: 131
Alignm identity: 105
Alignm E-value: 2e-23
Alignm gaps (pig, cow): 53, 77

Conread position: 135-288
Cow position: chr20:15576865-15577022 (view UCSC Genome Browser custom track)
Alignm length: 160
Alignm identity: 128
Alignm E-value: 1e-29
Alignm gaps (pig, cow): 8, 61

Conread position: 138-276
Cow position: chr20:14471526-14471666 (view UCSC Genome Browser custom track)
Alignm length: 143
Alignm identity: 113
Alignm E-value: 6e-25
Alignm gaps (pig, cow): 34, 67

Conread position: 162-289
Cow position: chr20:12362871-12362996 (view UCSC Genome Browser custom track)
Alignm length: 129
Alignm identity: 105
Alignm E-value: 7e-26
Alignm gaps (pig, cow): 71, 28

Show alignments to all cow chromosomes.