Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-136 |
| Cow position: | chr21:13418056-13418191 (view UCSC Genome Browser custom track) |
| Alignm length: | 138 |
| Alignm identity: | 106 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-185 |
| Cow position: | chr21:1885612-1885802 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 143 |
| Alignm E-value: | 7e-25 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-239 |
| Cow position: | chr21:23397668-23397908 (view UCSC Genome Browser custom track) |
| Alignm length: | 247 |
| Alignm identity: | 191 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-240 |
| Cow position: | chr21:37848402-37848175 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 179 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 39, 128 |
| Conread position: | 1-249 |
| Cow position: | chr21:31662182-31661932 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 195 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-274 |
| Cow position: | chr21:21181355-21181079 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-284 |
| Cow position: | chr21:4276425-4276695 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 59, 17 |
| Conread position: | 1-284 |
| Cow position: | chr21:34565036-34565316 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-287 |
| Cow position: | chr21:25286692-25286399 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 217 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 64, 16 |
| Conread position: | 1-288 |
| Cow position: | chr21:23786210-23785918 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 213 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 1-289 |
| Cow position: | chr21:24698659-24698378 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 17 |
| Conread position: | 1-289 |
| Cow position: | chr21:34740023-34739734 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 211 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-289 |
| Cow position: | chr21:35997350-35997061 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-279 |
| Cow position: | chr21:44754612-44754875 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 196 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 19, 0 |
| Conread position: | 2-289 |
| Cow position: | chr21:11675876-11676155 (view UCSC Genome Browser custom track) |
| Alignm length: | 291 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-290 |
| Cow position: | chr21:6058470-6058753 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 208 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 63, 16 |
| Conread position: | 2-290 |
| Cow position: | chr21:21223459-21223181 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-28 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 2-294 |
| Cow position: | chr21:23478554-23478835 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 225 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 3-203 |
| Cow position: | chr21:37718273-37718471 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 171 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 3-224 |
| Cow position: | chr21:36371660-36371435 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 177 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-271 |
| Cow position: | chr21:48290881-48291132 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 205 |
| Alignm E-value: | 3e-37 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-275 |
| Cow position: | chr21:18941657-18941928 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 203 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 57, 12 |
| Conread position: | 3-275 |
| Cow position: | chr21:31576668-31576412 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 206 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-275 |
| Cow position: | chr21:41514970-41514706 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 3-279 |
| Cow position: | chr21:13089297-13089571 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 185 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 37, 18 |
| Conread position: | 3-287 |
| Cow position: | chr21:44093939-44093669 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 205 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 63, 15 |
| Conread position: | 3-289 |
| Cow position: | chr21:31004499-31004797 (view UCSC Genome Browser custom track) |
| Alignm length: | 311 |
| Alignm identity: | 225 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 39, 18 |
| Conread position: | 4-249 |
| Cow position: | chr21:2056866-2057114 (view UCSC Genome Browser custom track) |
| Alignm length: | 256 |
| Alignm identity: | 176 |
| Alignm E-value: | 2e-21 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 4-279 |
| Cow position: | chr21:36819052-36819315 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 38, 19 |
| Conread position: | 4-279 |
| Cow position: | chr21:45923479-45923746 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 207 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 4-310 |
| Cow position: | chr21:31200336-31200038 (view UCSC Genome Browser custom track) |
| Alignm length: | 316 |
| Alignm identity: | 233 |
| Alignm E-value: | 4.99983e-42 |
| Alignm gaps (pig, cow): | 38, 13 |
| Conread position: | 6-241 |
| Cow position: | chr21:15239452-15239212 (view UCSC Genome Browser custom track) |
| Alignm length: | 246 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 14-206 |
| Cow position: | chr21:39509221-39509419 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 29, 51 |
| Conread position: | 15-194 |
| Cow position: | chr21:13737220-13737035 (view UCSC Genome Browser custom track) |
| Alignm length: | 188 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 45, 166 |
| Conread position: | 15-240 |
| Cow position: | chr21:47715379-47715608 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 179 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 50, 24 |
| Conread position: | 15-276 |
| Cow position: | chr21:49649795-49649535 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 27, 191 |
| Conread position: | 15-288 |
| Cow position: | chr21:15741918-15742207 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-29 |
| Alignm gaps (pig, cow): | 27, 117 |
| Conread position: | 17-279 |
| Cow position: | chr21:6316378-6316107 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 206 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 25, 244 |
| Conread position: | 18-208 |
| Cow position: | chr21:37845599-37845793 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 153 |
| Alignm E-value: | 5e-32 |
| Alignm gaps (pig, cow): | 24, 93 |
| Conread position: | 21-290 |
| Cow position: | chr21:37886564-37886302 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 186 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 18, 50 |
| Conread position: | 27-275 |
| Cow position: | chr21:35062237-35061994 (view UCSC Genome Browser custom track) |
| Alignm length: | 252 |
| Alignm identity: | 186 |
| Alignm E-value: | 3e-38 |
| Alignm gaps (pig, cow): | 15, 148 |
| Conread position: | 31-273 |
| Cow position: | chr21:1591705-1591454 (view UCSC Genome Browser custom track) |
| Alignm length: | 255 |
| Alignm identity: | 175 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 10, 119 |
| Conread position: | 32-201 |
| Cow position: | chr21:11019530-11019359 (view UCSC Genome Browser custom track) |
| Alignm length: | 175 |
| Alignm identity: | 137 |
| Alignm E-value: | 4e-30 |
| Alignm gaps (pig, cow): | 16, 42 |
| Conread position: | 52-280 |
| Cow position: | chr21:33997099-33997329 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 161 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 9, 146 |
| Conread position: | 59-289 |
| Cow position: | chr21:6621203-6621436 (view UCSC Genome Browser custom track) |
| Alignm length: | 239 |
| Alignm identity: | 177 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 113, 82 |
| Conread position: | 64-230 |
| Cow position: | chr21:44764324-44764489 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 129 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 136, 65 |
| Conread position: | 64-279 |
| Cow position: | chr21:28997787-28998004 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 172 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 61, 74 |
| Conread position: | 82-288 |
| Cow position: | chr21:30150170-30150377 (view UCSC Genome Browser custom track) |
| Alignm length: | 212 |
| Alignm identity: | 162 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 38, 78 |
| Conread position: | 83-256 |
| Cow position: | chr21:46552011-46552186 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 126 |
| Alignm E-value: | 5e-21 |
| Alignm gaps (pig, cow): | 99, 139 |
| Conread position: | 88-289 |
| Cow position: | chr21:27229704-27229907 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 149 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 62, 53 |
| Conread position: | 94-288 |
| Cow position: | chr21:49662040-49662229 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 154 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 49, 102 |
| Conread position: | 96-288 |
| Cow position: | chr21:32574800-32574607 (view UCSC Genome Browser custom track) |
| Alignm length: | 198 |
| Alignm identity: | 150 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 45, 52 |
| Conread position: | 97-289 |
| Cow position: | chr21:32665697-32665882 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 145 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 45, 73 |
| Conread position: | 98-288 |
| Cow position: | chr21:2412840-2412649 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 142 |
| Alignm E-value: | 4e-29 |
| Alignm gaps (pig, cow): | 84, 28 |
| Conread position: | 100-289 |
| Cow position: | chr21:20426605-20426420 (view UCSC Genome Browser custom track) |
| Alignm length: | 191 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-24 |
| Alignm gaps (pig, cow): | 39, 113 |
| Conread position: | 131-289 |
| Cow position: | chr21:28944319-28944476 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 132 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 10, 29 |
| Conread position: | 138-289 |
| Cow position: | chr21:5426012-5425867 (view UCSC Genome Browser custom track) |
| Alignm length: | 153 |
| Alignm identity: | 117 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 94, 40 |
| Conread position: | 160-289 |
| Cow position: | chr21:24714674-24714540 (view UCSC Genome Browser custom track) |
| Alignm length: | 136 |
| Alignm identity: | 108 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 20, 97 |
Show alignments to all cow chromosomes.