Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-143 |
| Cow position: | chr22:29868498-29868640 (view UCSC Genome Browser custom track) |
| Alignm length: | 145 |
| Alignm identity: | 111 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-197 |
| Cow position: | chr22:34675631-34675435 (view UCSC Genome Browser custom track) |
| Alignm length: | 200 |
| Alignm identity: | 155 |
| Alignm E-value: | 9e-38 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-214 |
| Cow position: | chr22:39601512-39601305 (view UCSC Genome Browser custom track) |
| Alignm length: | 218 |
| Alignm identity: | 159 |
| Alignm E-value: | 8e-27 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-223 |
| Cow position: | chr22:17780619-17780835 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 175 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-230 |
| Cow position: | chr22:43262565-43262337 (view UCSC Genome Browser custom track) |
| Alignm length: | 232 |
| Alignm identity: | 168 |
| Alignm E-value: | 7e-36 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-267 |
| Cow position: | chr22:22997588-22997322 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 208 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-273 |
| Cow position: | chr22:32221749-32221480 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-276 |
| Cow position: | chr22:7518531-7518254 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 201 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-279 |
| Cow position: | chr22:14119088-14118809 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-279 |
| Cow position: | chr22:44835768-44835477 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 217 |
| Alignm E-value: | 3e-39 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-286 |
| Cow position: | chr22:26057491-26057214 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 213 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr22:27224239-27223955 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 208 |
| Alignm E-value: | 4e-31 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 1-289 |
| Cow position: | chr22:2476101-2476390 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 218 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr22:4161509-4161792 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 216 |
| Alignm E-value: | 4.00001e-40 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr22:10683567-10683844 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 221 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 64, 17 |
| Conread position: | 1-289 |
| Cow position: | chr22:13187994-13187701 (view UCSC Genome Browser custom track) |
| Alignm length: | 299 |
| Alignm identity: | 226 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr22:19040255-19040548 (view UCSC Genome Browser custom track) |
| Alignm length: | 301 |
| Alignm identity: | 233 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-289 |
| Cow position: | chr22:23861044-23861326 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 6.02558e-44 |
| Alignm gaps (pig, cow): | 40, 11 |
| Conread position: | 2-184 |
| Cow position: | chr22:12535671-12535854 (view UCSC Genome Browser custom track) |
| Alignm length: | 187 |
| Alignm identity: | 141 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 40, 21 |
| Conread position: | 2-273 |
| Cow position: | chr22:15358356-15358080 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-280 |
| Cow position: | chr22:13057597-13057868 (view UCSC Genome Browser custom track) |
| Alignm length: | 286 |
| Alignm identity: | 210 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-288 |
| Cow position: | chr22:23009834-23010117 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 2-288 |
| Cow position: | chr22:23580735-23581014 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 217 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-288 |
| Cow position: | chr22:26941900-26941621 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 214 |
| Alignm E-value: | 1.4013e-45 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 2-289 |
| Cow position: | chr22:15398468-15398757 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-119 |
| Cow position: | chr22:23037641-23037757 (view UCSC Genome Browser custom track) |
| Alignm length: | 119 |
| Alignm identity: | 96 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-143 |
| Cow position: | chr22:31192468-31192607 (view UCSC Genome Browser custom track) |
| Alignm length: | 142 |
| Alignm identity: | 110 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-215 |
| Cow position: | chr22:10649671-10649883 (view UCSC Genome Browser custom track) |
| Alignm length: | 216 |
| Alignm identity: | 169 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 39, 9 |
| Conread position: | 3-236 |
| Cow position: | chr22:45355487-45355242 (view UCSC Genome Browser custom track) |
| Alignm length: | 249 |
| Alignm identity: | 184 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 3-267 |
| Cow position: | chr22:9466720-9466452 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 38, 12 |
| Conread position: | 3-270 |
| Cow position: | chr22:13235630-13235378 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 204 |
| Alignm E-value: | 1e-38 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-273 |
| Cow position: | chr22:41389217-41388943 (view UCSC Genome Browser custom track) |
| Alignm length: | 280 |
| Alignm identity: | 192 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-275 |
| Cow position: | chr22:18486819-18487075 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 39, 13 |
| Conread position: | 3-284 |
| Cow position: | chr22:7301729-7302013 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 220 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 62, 16 |
| Conread position: | 3-288 |
| Cow position: | chr22:25715115-25714832 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 213 |
| Alignm E-value: | 9.99995e-41 |
| Alignm gaps (pig, cow): | 37, 12 |
| Conread position: | 3-288 |
| Cow position: | chr22:26184051-26184340 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 206 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 3-289 |
| Cow position: | chr22:4651288-4651002 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 215 |
| Alignm E-value: | 4.00001e-41 |
| Alignm gaps (pig, cow): | 40, 12 |
| Conread position: | 3-290 |
| Cow position: | chr22:33386400-33386683 (view UCSC Genome Browser custom track) |
| Alignm length: | 293 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 4-146 |
| Cow position: | chr22:21650276-21650133 (view UCSC Genome Browser custom track) |
| Alignm length: | 146 |
| Alignm identity: | 110 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 4-289 |
| Cow position: | chr22:4028907-4028627 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 212 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 38, 11 |
| Conread position: | 12-271 |
| Cow position: | chr22:139198-139465 (view UCSC Genome Browser custom track) |
| Alignm length: | 270 |
| Alignm identity: | 200 |
| Alignm E-value: | 5.00264e-43 |
| Alignm gaps (pig, cow): | 30, 197 |
| Conread position: | 12-288 |
| Cow position: | chr22:41684187-41684463 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 208 |
| Alignm E-value: | 5.60519e-45 |
| Alignm gaps (pig, cow): | 53, 27 |
| Conread position: | 15-214 |
| Cow position: | chr22:26764131-26763927 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 145 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 28, 110 |
| Conread position: | 15-288 |
| Cow position: | chr22:5622617-5622897 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 207 |
| Alignm E-value: | 2.00386e-43 |
| Alignm gaps (pig, cow): | 26, 185 |
| Conread position: | 17-276 |
| Cow position: | chr22:11778512-11778777 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 195 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 25, 96 |
| Conread position: | 20-267 |
| Cow position: | chr22:45846237-45845989 (view UCSC Genome Browser custom track) |
| Alignm length: | 259 |
| Alignm identity: | 181 |
| Alignm E-value: | 2e-22 |
| Alignm gaps (pig, cow): | 14, 7 |
| Conread position: | 21-289 |
| Cow position: | chr22:26376359-26376089 (view UCSC Genome Browser custom track) |
| Alignm length: | 275 |
| Alignm identity: | 211 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 21, 38 |
| Conread position: | 24-253 |
| Cow position: | chr22:15928557-15928788 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 179 |
| Alignm E-value: | 8e-37 |
| Alignm gaps (pig, cow): | 13, 182 |
| Conread position: | 26-195 |
| Cow position: | chr22:36280331-36280154 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 127 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 16, 0 |
| Conread position: | 30-230 |
| Cow position: | chr22:24071808-24072011 (view UCSC Genome Browser custom track) |
| Alignm length: | 205 |
| Alignm identity: | 155 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 12, 175 |
| Conread position: | 31-288 |
| Cow position: | chr22:42605721-42605450 (view UCSC Genome Browser custom track) |
| Alignm length: | 274 |
| Alignm identity: | 197 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 11, 175 |
| Conread position: | 39-288 |
| Cow position: | chr22:34953889-34953627 (view UCSC Genome Browser custom track) |
| Alignm length: | 264 |
| Alignm identity: | 188 |
| Alignm E-value: | 1e-31 |
| Alignm gaps (pig, cow): | 26, 226 |
| Conread position: | 40-208 |
| Cow position: | chr22:5927885-5928060 (view UCSC Genome Browser custom track) |
| Alignm length: | 177 |
| Alignm identity: | 131 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 25, 161 |
| Conread position: | 40-288 |
| Cow position: | chr22:11257674-11257913 (view UCSC Genome Browser custom track) |
| Alignm length: | 251 |
| Alignm identity: | 179 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 13, 141 |
| Conread position: | 42-240 |
| Cow position: | chr22:26264157-26264362 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 157 |
| Alignm E-value: | 2e-34 |
| Alignm gaps (pig, cow): | 47, 157 |
| Conread position: | 47-286 |
| Cow position: | chr22:19652916-19653161 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 182 |
| Alignm E-value: | 6e-34 |
| Alignm gaps (pig, cow): | 13, 81 |
| Conread position: | 51-267 |
| Cow position: | chr22:15666270-15666053 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 173 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 128, 144 |
| Conread position: | 64-279 |
| Cow position: | chr22:19738525-19738743 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 171 |
| Alignm E-value: | 1.99965e-42 |
| Alignm gaps (pig, cow): | 75, 140 |
| Conread position: | 68-290 |
| Cow position: | chr22:26141319-26141097 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 154 |
| Alignm E-value: | 5e-22 |
| Alignm gaps (pig, cow): | 25, 82 |
| Conread position: | 72-288 |
| Cow position: | chr22:26011912-26011690 (view UCSC Genome Browser custom track) |
| Alignm length: | 227 |
| Alignm identity: | 169 |
| Alignm E-value: | 2e-33 |
| Alignm gaps (pig, cow): | 66, 102 |
| Conread position: | 72-290 |
| Cow position: | chr22:30573119-30573336 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 151 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 21, 154 |
| Conread position: | 73-290 |
| Cow position: | chr22:37554584-37554801 (view UCSC Genome Browser custom track) |
| Alignm length: | 222 |
| Alignm identity: | 165 |
| Alignm E-value: | 7e-35 |
| Alignm gaps (pig, cow): | 75, 123 |
| Conread position: | 82-279 |
| Cow position: | chr22:11745877-11746072 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 149 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 61, 114 |
| Conread position: | 86-290 |
| Cow position: | chr22:35520233-35520436 (view UCSC Genome Browser custom track) |
| Alignm length: | 208 |
| Alignm identity: | 162 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 89, 55 |
| Conread position: | 89-289 |
| Cow position: | chr22:15090761-15090561 (view UCSC Genome Browser custom track) |
| Alignm length: | 204 |
| Alignm identity: | 146 |
| Alignm E-value: | 3e-27 |
| Alignm gaps (pig, cow): | 39, 58 |
| Conread position: | 108-289 |
| Cow position: | chr22:39452601-39452409 (view UCSC Genome Browser custom track) |
| Alignm length: | 194 |
| Alignm identity: | 145 |
| Alignm E-value: | 8e-26 |
| Alignm gaps (pig, cow): | 31, 151 |
| Conread position: | 132-289 |
| Cow position: | chr22:33917919-33918078 (view UCSC Genome Browser custom track) |
| Alignm length: | 163 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-35 |
| Alignm gaps (pig, cow): | 45, 115 |
| Conread position: | 134-284 |
| Cow position: | chr22:27514642-27514493 (view UCSC Genome Browser custom track) |
| Alignm length: | 155 |
| Alignm identity: | 118 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 46, 16 |
| Conread position: | 158-289 |
| Cow position: | chr22:15428495-15428624 (view UCSC Genome Browser custom track) |
| Alignm length: | 132 |
| Alignm identity: | 102 |
| Alignm E-value: | 6e-23 |
| Alignm gaps (pig, cow): | 43, 0 |
Show alignments to all cow chromosomes.