Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-184 |
| Cow position: | chr23:26217677-26217492 (view UCSC Genome Browser custom track) |
| Alignm length: | 189 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 26, 38 |
| Conread position: | 1-194 |
| Cow position: | chr23:29393549-29393355 (view UCSC Genome Browser custom track) |
| Alignm length: | 199 |
| Alignm identity: | 151 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 25, 17 |
| Conread position: | 1-194 |
| Cow position: | chr23:35155491-35155292 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 146 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-198 |
| Cow position: | chr23:35497911-35498106 (view UCSC Genome Browser custom track) |
| Alignm length: | 201 |
| Alignm identity: | 152 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-209 |
| Cow position: | chr23:17000822-17000611 (view UCSC Genome Browser custom track) |
| Alignm length: | 220 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-222 |
| Cow position: | chr23:21275900-21276129 (view UCSC Genome Browser custom track) |
| Alignm length: | 235 |
| Alignm identity: | 178 |
| Alignm E-value: | 6e-35 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-279 |
| Cow position: | chr23:14126681-14126408 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 15 |
| Conread position: | 1-279 |
| Cow position: | chr23:30308025-30307746 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 201 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr23:30773582-30773839 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 213 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 178, 18 |
| Conread position: | 1-280 |
| Cow position: | chr23:11434143-11434425 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-280 |
| Cow position: | chr23:22660472-22660744 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 216 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 64, 18 |
| Conread position: | 1-288 |
| Cow position: | chr23:16793699-16793424 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 219 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-288 |
| Cow position: | chr23:35362661-35362946 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 200 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-289 |
| Cow position: | chr23:8930020-8930286 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 207 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 41, 20 |
| Conread position: | 1-289 |
| Cow position: | chr23:28894838-28895142 (view UCSC Genome Browser custom track) |
| Alignm length: | 310 |
| Alignm identity: | 228 |
| Alignm E-value: | 9.99967e-42 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr23:30210231-30210519 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 221 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-289 |
| Cow position: | chr23:37223956-37224240 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 18 |
| Conread position: | 1-290 |
| Cow position: | chr23:40862464-40862164 (view UCSC Genome Browser custom track) |
| Alignm length: | 304 |
| Alignm identity: | 220 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 1-291 |
| Cow position: | chr23:20585584-20585893 (view UCSC Genome Browser custom track) |
| Alignm length: | 314 |
| Alignm identity: | 231 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 40, 22 |
| Conread position: | 1-294 |
| Cow position: | chr23:16237139-16237437 (view UCSC Genome Browser custom track) |
| Alignm length: | 305 |
| Alignm identity: | 236 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 11 |
| Conread position: | 2-191 |
| Cow position: | chr23:1677511-1677319 (view UCSC Genome Browser custom track) |
| Alignm length: | 196 |
| Alignm identity: | 141 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 40, 13 |
| Conread position: | 2-288 |
| Cow position: | chr23:40651356-40651635 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 43, 16 |
| Conread position: | 2-290 |
| Cow position: | chr23:9711479-9711758 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 216 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 40, 16 |
| Conread position: | 3-179 |
| Cow position: | chr23:7611377-7611205 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 135 |
| Alignm E-value: | 3e-29 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 3-284 |
| Cow position: | chr23:1203612-1203887 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 198 |
| Alignm E-value: | 2e-24 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-289 |
| Cow position: | chr23:22588164-22588444 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 222 |
| Alignm E-value: | 3.99931e-42 |
| Alignm gaps (pig, cow): | 38, 16 |
| Conread position: | 4-202 |
| Cow position: | chr23:23192041-23192239 (view UCSC Genome Browser custom track) |
| Alignm length: | 203 |
| Alignm identity: | 159 |
| Alignm E-value: | 9e-39 |
| Alignm gaps (pig, cow): | 38, 15 |
| Conread position: | 5-279 |
| Cow position: | chr23:19636147-19636424 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 37, 10 |
| Conread position: | 7-290 |
| Cow position: | chr23:20753118-20752842 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 214 |
| Alignm E-value: | 9.94922e-44 |
| Alignm gaps (pig, cow): | 35, 11 |
| Conread position: | 15-152 |
| Cow position: | chr23:18495901-18495763 (view UCSC Genome Browser custom track) |
| Alignm length: | 140 |
| Alignm identity: | 105 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 27, 16 |
| Conread position: | 15-275 |
| Cow position: | chr23:21660051-21659783 (view UCSC Genome Browser custom track) |
| Alignm length: | 272 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-39 |
| Alignm gaps (pig, cow): | 26, 101 |
| Conread position: | 15-276 |
| Cow position: | chr23:29272220-29271961 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-27 |
| Alignm gaps (pig, cow): | 27, 138 |
| Conread position: | 15-279 |
| Cow position: | chr23:40525878-40526133 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 194 |
| Alignm E-value: | 4e-32 |
| Alignm gaps (pig, cow): | 27, 151 |
| Conread position: | 15-284 |
| Cow position: | chr23:791929-792197 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 189 |
| Alignm E-value: | 7e-26 |
| Alignm gaps (pig, cow): | 46, 24 |
| Conread position: | 18-289 |
| Cow position: | chr23:41589820-41590085 (view UCSC Genome Browser custom track) |
| Alignm length: | 279 |
| Alignm identity: | 214 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 22, 61 |
| Conread position: | 20-289 |
| Cow position: | chr23:31607054-31607333 (view UCSC Genome Browser custom track) |
| Alignm length: | 283 |
| Alignm identity: | 220 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 20, 87 |
| Conread position: | 20-290 |
| Cow position: | chr23:38455077-38455356 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 193 |
| Alignm E-value: | 6e-25 |
| Alignm gaps (pig, cow): | 12, 129 |
| Conread position: | 21-289 |
| Cow position: | chr23:10414924-10415200 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 195 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 16, 86 |
| Conread position: | 24-263 |
| Cow position: | chr23:32063282-32063511 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 175 |
| Alignm E-value: | 5e-24 |
| Alignm gaps (pig, cow): | 19, 56 |
| Conread position: | 25-186 |
| Cow position: | chr23:22419078-22418924 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 126 |
| Alignm E-value: | 4e-21 |
| Alignm gaps (pig, cow): | 17, 76 |
| Conread position: | 25-191 |
| Cow position: | chr23:14543129-14543300 (view UCSC Genome Browser custom track) |
| Alignm length: | 172 |
| Alignm identity: | 129 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 17, 0 |
| Conread position: | 39-275 |
| Cow position: | chr23:18492247-18492011 (view UCSC Genome Browser custom track) |
| Alignm length: | 244 |
| Alignm identity: | 173 |
| Alignm E-value: | 3e-28 |
| Alignm gaps (pig, cow): | 26, 98 |
| Conread position: | 39-289 |
| Cow position: | chr23:16058671-16058425 (view UCSC Genome Browser custom track) |
| Alignm length: | 257 |
| Alignm identity: | 189 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 25, 75 |
| Conread position: | 40-300 |
| Cow position: | chr23:7550575-7550825 (view UCSC Genome Browser custom track) |
| Alignm length: | 267 |
| Alignm identity: | 195 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 27, 7 |
| Conread position: | 64-199 |
| Cow position: | chr23:24515835-24515970 (view UCSC Genome Browser custom track) |
| Alignm length: | 137 |
| Alignm identity: | 107 |
| Alignm E-value: | 2e-25 |
| Alignm gaps (pig, cow): | 78, 127 |
| Conread position: | 82-286 |
| Cow position: | chr23:645360-645157 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 147 |
| Alignm E-value: | 8e-28 |
| Alignm gaps (pig, cow): | 98, 124 |
| Conread position: | 82-291 |
| Cow position: | chr23:32662612-32662404 (view UCSC Genome Browser custom track) |
| Alignm length: | 214 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-33 |
| Alignm gaps (pig, cow): | 61, 122 |
| Conread position: | 85-274 |
| Cow position: | chr23:7220984-7221169 (view UCSC Genome Browser custom track) |
| Alignm length: | 192 |
| Alignm identity: | 143 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 142, 22 |
| Conread position: | 86-279 |
| Cow position: | chr23:20781850-20781664 (view UCSC Genome Browser custom track) |
| Alignm length: | 197 |
| Alignm identity: | 150 |
| Alignm E-value: | 9e-29 |
| Alignm gaps (pig, cow): | 57, 107 |
| Conread position: | 98-289 |
| Cow position: | chr23:2371390-2371201 (view UCSC Genome Browser custom track) |
| Alignm length: | 195 |
| Alignm identity: | 140 |
| Alignm E-value: | 2e-23 |
| Alignm gaps (pig, cow): | 46, 33 |
| Conread position: | 132-289 |
| Cow position: | chr23:23470919-23470768 (view UCSC Genome Browser custom track) |
| Alignm length: | 159 |
| Alignm identity: | 128 |
| Alignm E-value: | 1e-30 |
| Alignm gaps (pig, cow): | 95, 49 |
Show alignments to all cow chromosomes.