Cow genome map
| Conread name: | Ss1.1-Ova1-OVRM10069H08.5 |
| Conread position: | 1-104 |
| Cow position: | chr27:18219239-18219342 (view UCSC Genome Browser custom track) |
| Alignm length: | 106 |
| Alignm identity: | 89 |
| Alignm E-value: | 1e-21 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-142 |
| Cow position: | chr27:21971040-21970900 (view UCSC Genome Browser custom track) |
| Alignm length: | 144 |
| Alignm identity: | 116 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-177 |
| Cow position: | chr27:12247528-12247698 (view UCSC Genome Browser custom track) |
| Alignm length: | 178 |
| Alignm identity: | 136 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 68, 17 |
| Conread position: | 1-212 |
| Cow position: | chr27:12913986-12913770 (view UCSC Genome Browser custom track) |
| Alignm length: | 221 |
| Alignm identity: | 159 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 41, 14 |
| Conread position: | 1-221 |
| Cow position: | chr27:22108364-22108147 (view UCSC Genome Browser custom track) |
| Alignm length: | 229 |
| Alignm identity: | 164 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 36, 17 |
| Conread position: | 1-229 |
| Cow position: | chr27:19083875-19083645 (view UCSC Genome Browser custom track) |
| Alignm length: | 238 |
| Alignm identity: | 176 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-245 |
| Cow position: | chr27:11356698-11356454 (view UCSC Genome Browser custom track) |
| Alignm length: | 250 |
| Alignm identity: | 180 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 211 |
| Conread position: | 1-249 |
| Cow position: | chr27:24509660-24509910 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 177 |
| Alignm E-value: | 4e-24 |
| Alignm gaps (pig, cow): | 40, 17 |
| Conread position: | 1-279 |
| Cow position: | chr27:6454052-6454333 (view UCSC Genome Browser custom track) |
| Alignm length: | 288 |
| Alignm identity: | 208 |
| Alignm E-value: | 2e-40 |
| Alignm gaps (pig, cow): | 59, 29 |
| Conread position: | 1-279 |
| Cow position: | chr27:26299684-26299961 (view UCSC Genome Browser custom track) |
| Alignm length: | 289 |
| Alignm identity: | 207 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-279 |
| Cow position: | chr27:27053137-27053415 (view UCSC Genome Browser custom track) |
| Alignm length: | 287 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-280 |
| Cow position: | chr27:11416293-11416572 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 223 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr27:12244284-12244004 (view UCSC Genome Browser custom track) |
| Alignm length: | 296 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-31 |
| Alignm gaps (pig, cow): | 42, 18 |
| Conread position: | 1-288 |
| Cow position: | chr27:13005691-13005966 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 207 |
| Alignm E-value: | 3e-32 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr27:21138672-21138954 (view UCSC Genome Browser custom track) |
| Alignm length: | 297 |
| Alignm identity: | 220 |
| Alignm E-value: | 9.00054e-42 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 1-288 |
| Cow position: | chr27:29039100-29038813 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 214 |
| Alignm E-value: | 2e-36 |
| Alignm gaps (pig, cow): | 46, 18 |
| Conread position: | 1-290 |
| Cow position: | chr27:24341746-24342033 (view UCSC Genome Browser custom track) |
| Alignm length: | 298 |
| Alignm identity: | 205 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 41, 17 |
| Conread position: | 2-279 |
| Cow position: | chr27:23662750-23662486 (view UCSC Genome Browser custom track) |
| Alignm length: | 282 |
| Alignm identity: | 200 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 38, 20 |
| Conread position: | 2-279 |
| Cow position: | chr27:26492852-26492582 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 208 |
| Alignm E-value: | 5e-36 |
| Alignm gaps (pig, cow): | 41, 16 |
| Conread position: | 2-290 |
| Cow position: | chr27:28107339-28107060 (view UCSC Genome Browser custom track) |
| Alignm length: | 300 |
| Alignm identity: | 218 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 63, 20 |
| Conread position: | 3-120 |
| Cow position: | chr27:16525997-16525880 (view UCSC Genome Browser custom track) |
| Alignm length: | 120 |
| Alignm identity: | 97 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 40, 15 |
| Conread position: | 3-139 |
| Cow position: | chr27:13958500-13958360 (view UCSC Genome Browser custom track) |
| Alignm length: | 143 |
| Alignm identity: | 113 |
| Alignm E-value: | 1e-24 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-266 |
| Cow position: | chr27:25970251-25970501 (view UCSC Genome Browser custom track) |
| Alignm length: | 266 |
| Alignm identity: | 190 |
| Alignm E-value: | 1e-32 |
| Alignm gaps (pig, cow): | 138, 16 |
| Conread position: | 3-267 |
| Cow position: | chr27:14937586-14937314 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 222 |
| Alignm E-value: | 0 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-274 |
| Cow position: | chr27:8048888-8048623 (view UCSC Genome Browser custom track) |
| Alignm length: | 278 |
| Alignm identity: | 211 |
| Alignm E-value: | 4.2039e-45 |
| Alignm gaps (pig, cow): | 62, 13 |
| Conread position: | 3-276 |
| Cow position: | chr27:25982875-25982591 (view UCSC Genome Browser custom track) |
| Alignm length: | 295 |
| Alignm identity: | 210 |
| Alignm E-value: | 2e-29 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 3-279 |
| Cow position: | chr27:29019890-29019630 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 208 |
| Alignm E-value: | 6e-38 |
| Alignm gaps (pig, cow): | 39, 16 |
| Conread position: | 3-288 |
| Cow position: | chr27:26161348-26161627 (view UCSC Genome Browser custom track) |
| Alignm length: | 294 |
| Alignm identity: | 209 |
| Alignm E-value: | 3e-33 |
| Alignm gaps (pig, cow): | 70, 16 |
| Conread position: | 3-289 |
| Cow position: | chr27:16493429-16493704 (view UCSC Genome Browser custom track) |
| Alignm length: | 292 |
| Alignm identity: | 214 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 39, 15 |
| Conread position: | 4-279 |
| Cow position: | chr27:464816-465080 (view UCSC Genome Browser custom track) |
| Alignm length: | 281 |
| Alignm identity: | 199 |
| Alignm E-value: | 8e-31 |
| Alignm gaps (pig, cow): | 38, 18 |
| Conread position: | 5-205 |
| Cow position: | chr27:783550-783753 (view UCSC Genome Browser custom track) |
| Alignm length: | 207 |
| Alignm identity: | 160 |
| Alignm E-value: | 5e-37 |
| Alignm gaps (pig, cow): | 37, 14 |
| Conread position: | 5-289 |
| Cow position: | chr27:23659478-23659208 (view UCSC Genome Browser custom track) |
| Alignm length: | 290 |
| Alignm identity: | 201 |
| Alignm E-value: | 2e-26 |
| Alignm gaps (pig, cow): | 37, 13 |
| Conread position: | 12-288 |
| Cow position: | chr27:4664329-4664601 (view UCSC Genome Browser custom track) |
| Alignm length: | 284 |
| Alignm identity: | 202 |
| Alignm E-value: | 4e-34 |
| Alignm gaps (pig, cow): | 30, 182 |
| Conread position: | 14-249 |
| Cow position: | chr27:21681472-21681243 (view UCSC Genome Browser custom track) |
| Alignm length: | 245 |
| Alignm identity: | 171 |
| Alignm E-value: | 3e-21 |
| Alignm gaps (pig, cow): | 51, 26 |
| Conread position: | 17-273 |
| Cow position: | chr27:20766097-20765845 (view UCSC Genome Browser custom track) |
| Alignm length: | 260 |
| Alignm identity: | 192 |
| Alignm E-value: | 8.00001e-41 |
| Alignm gaps (pig, cow): | 48, 29 |
| Conread position: | 18-194 |
| Cow position: | chr27:19869686-19869868 (view UCSC Genome Browser custom track) |
| Alignm length: | 183 |
| Alignm identity: | 136 |
| Alignm E-value: | 6e-28 |
| Alignm gaps (pig, cow): | 9, 0 |
| Conread position: | 18-279 |
| Cow position: | chr27:25471005-25471258 (view UCSC Genome Browser custom track) |
| Alignm length: | 263 |
| Alignm identity: | 186 |
| Alignm E-value: | 1e-33 |
| Alignm gaps (pig, cow): | 24, 41 |
| Conread position: | 20-291 |
| Cow position: | chr27:10086810-10086552 (view UCSC Genome Browser custom track) |
| Alignm length: | 276 |
| Alignm identity: | 194 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 22, 57 |
| Conread position: | 20-293 |
| Cow position: | chr27:25886073-25885799 (view UCSC Genome Browser custom track) |
| Alignm length: | 285 |
| Alignm identity: | 195 |
| Alignm E-value: | 4e-25 |
| Alignm gaps (pig, cow): | 22, 59 |
| Conread position: | 23-289 |
| Cow position: | chr27:19577536-19577807 (view UCSC Genome Browser custom track) |
| Alignm length: | 277 |
| Alignm identity: | 185 |
| Alignm E-value: | 1e-22 |
| Alignm gaps (pig, cow): | 16, 65 |
| Conread position: | 24-288 |
| Cow position: | chr27:23600135-23600396 (view UCSC Genome Browser custom track) |
| Alignm length: | 273 |
| Alignm identity: | 203 |
| Alignm E-value: | 2e-38 |
| Alignm gaps (pig, cow): | 18, 67 |
| Conread position: | 29-288 |
| Cow position: | chr27:6159848-6160115 (view UCSC Genome Browser custom track) |
| Alignm length: | 271 |
| Alignm identity: | 187 |
| Alignm E-value: | 2e-28 |
| Alignm gaps (pig, cow): | 31, 172 |
| Conread position: | 39-289 |
| Cow position: | chr27:12425038-12424794 (view UCSC Genome Browser custom track) |
| Alignm length: | 258 |
| Alignm identity: | 199 |
| Alignm E-value: | 1.00053e-42 |
| Alignm gaps (pig, cow): | 20, 67 |
| Conread position: | 64-288 |
| Cow position: | chr27:9169736-9169513 (view UCSC Genome Browser custom track) |
| Alignm length: | 228 |
| Alignm identity: | 152 |
| Alignm E-value: | 9e-21 |
| Alignm gaps (pig, cow): | 127, 13 |
| Conread position: | 88-289 |
| Cow position: | chr27:19637569-19637775 (view UCSC Genome Browser custom track) |
| Alignm length: | 209 |
| Alignm identity: | 147 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 7, 117 |
| Conread position: | 96-265 |
| Cow position: | chr27:9692109-9691944 (view UCSC Genome Browser custom track) |
| Alignm length: | 171 |
| Alignm identity: | 132 |
| Alignm E-value: | 8e-30 |
| Alignm gaps (pig, cow): | 130, 12 |
| Conread position: | 98-288 |
| Cow position: | chr27:30518622-30518802 (view UCSC Genome Browser custom track) |
| Alignm length: | 193 |
| Alignm identity: | 142 |
| Alignm E-value: | 3e-22 |
| Alignm gaps (pig, cow): | 44, 17 |
| Conread position: | 116-279 |
| Cow position: | chr27:18948635-18948472 (view UCSC Genome Browser custom track) |
| Alignm length: | 170 |
| Alignm identity: | 134 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 7, 30 |
| Conread position: | 117-289 |
| Cow position: | chr27:16580579-16580755 (view UCSC Genome Browser custom track) |
| Alignm length: | 179 |
| Alignm identity: | 135 |
| Alignm E-value: | 2e-27 |
| Alignm gaps (pig, cow): | 32, 88 |
| Conread position: | 131-288 |
| Cow position: | chr27:12231938-12231777 (view UCSC Genome Browser custom track) |
| Alignm length: | 165 |
| Alignm identity: | 129 |
| Alignm E-value: | 5e-26 |
| Alignm gaps (pig, cow): | 15, 74 |
| Conread position: | 133-289 |
| Cow position: | chr27:6620119-6620278 (view UCSC Genome Browser custom track) |
| Alignm length: | 166 |
| Alignm identity: | 131 |
| Alignm E-value: | 1e-23 |
| Alignm gaps (pig, cow): | 8, 72 |
Show alignments to all cow chromosomes.